BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004239
         (397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_564040.1| GDP-L-fucose synthase [Arabidopsis thaliana] gi...   204   6e-51
ref|NP_973853.1| GDP-L-fucose synthase [Arabidopsis thaliana] gi...   204   6e-51
ref|NP_177468.2| GDP-L-fucose synthase [Arabidopsis thaliana] gi...   204   8e-51
gb|AAG52124.1|AC010556_6 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer...   203   1e-50
ref|XP_002888917.1| GDP-4-keto-6-deoxymannose-3,5-epimerase-4-re...   202   2e-50

>ref|NP_564040.1| GDP-L-fucose synthase [Arabidopsis thaliana]
           gi|75174832|sp|Q9LMU0.1|FCL2_ARATH RecName:
           Full=Putative GDP-L-fucose synthase 2; AltName:
           Full=GDP-4-keto-6-deoxy-D-mannose-3,
           5-epimerase-4-reductase 2; Short=AtGER2
           gi|9665067|gb|AAF97269.1|AC034106_12 Strong similarity
           to GER1 from Arabidopsis thaliana gb|AF045286. ESTs
           gb|AI996642, gb|AV533951 come from this gene
           [Arabidopsis thaliana] gi|17380848|gb|AAL36236.1|
           putative GDP-L-fucose synthetase [Arabidopsis thaliana]
           gi|20465283|gb|AAM20005.1| putative GDP-L-fucose
           synthetase [Arabidopsis thaliana]
           gi|332191529|gb|AEE29650.1| GDP-L-fucose synthase
           [Arabidopsis thaliana]
          Length = 328

 Score =  204 bits (519), Expect = 6e-51
 Identities = 98/127 (77%), Positives = 113/127 (88%)
 Frame = +2

Query: 17  SFFSDKSSKILIAGHKGLVGSAIVKKLSESGYTNLLLRTHSELDLTRQAQVEKFFSTHKP 196
           SF  +KS+KI +AGH+GLVGSAIV+KL + G+TNL+LRTHSELDLT Q+ VE FF+T KP
Sbjct: 13  SFMLEKSAKIFVAGHRGLVGSAIVRKLQDQGFTNLVLRTHSELDLTSQSDVESFFATEKP 72

Query: 197 NYVILAAAKVGGIHANNTYPAEFISINLQIQTNVIHSAYTNEVKKILFLGSSCIYPKYAP 376
            YVILAAAKVGGIHANNTYPA+FI +NLQIQTNVIHSAYT+ VKK+LFLGSSCIYPK+AP
Sbjct: 73  VYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGVKKLLFLGSSCIYPKFAP 132

Query: 377 QPIKEDA 397
           QPI E A
Sbjct: 133 QPIPESA 139


>ref|NP_973853.1| GDP-L-fucose synthase [Arabidopsis thaliana]
           gi|42571527|ref|NP_973854.1| GDP-L-fucose synthase
           [Arabidopsis thaliana] gi|222424189|dbj|BAH20053.1|
           AT1G17890 [Arabidopsis thaliana]
           gi|332191527|gb|AEE29648.1| GDP-L-fucose synthase
           [Arabidopsis thaliana] gi|332191528|gb|AEE29649.1|
           GDP-L-fucose synthase [Arabidopsis thaliana]
          Length = 320

 Score =  204 bits (519), Expect = 6e-51
 Identities = 98/127 (77%), Positives = 113/127 (88%)
 Frame = +2

Query: 17  SFFSDKSSKILIAGHKGLVGSAIVKKLSESGYTNLLLRTHSELDLTRQAQVEKFFSTHKP 196
           SF  +KS+KI +AGH+GLVGSAIV+KL + G+TNL+LRTHSELDLT Q+ VE FF+T KP
Sbjct: 5   SFMLEKSAKIFVAGHRGLVGSAIVRKLQDQGFTNLVLRTHSELDLTSQSDVESFFATEKP 64

Query: 197 NYVILAAAKVGGIHANNTYPAEFISINLQIQTNVIHSAYTNEVKKILFLGSSCIYPKYAP 376
            YVILAAAKVGGIHANNTYPA+FI +NLQIQTNVIHSAYT+ VKK+LFLGSSCIYPK+AP
Sbjct: 65  VYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGVKKLLFLGSSCIYPKFAP 124

Query: 377 QPIKEDA 397
           QPI E A
Sbjct: 125 QPIPESA 131


>ref|NP_177468.2| GDP-L-fucose synthase [Arabidopsis thaliana]
           gi|334302905|sp|O49213.3|FCL1_ARATH RecName:
           Full=GDP-L-fucose synthase 1; AltName:
           Full=GDP-4-keto-6-deoxy-D-mannose-3,
           5-epimerase-4-reductase 1; Short=AtFX; Short=AtGER1
           gi|110737581|dbj|BAF00732.1|
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           [Arabidopsis thaliana] gi|119360017|gb|ABL66737.1|
           At1g73250 [Arabidopsis thaliana]
           gi|332197313|gb|AEE35434.1| GDP-L-fucose synthase
           [Arabidopsis thaliana]
          Length = 323

 Score =  204 bits (518), Expect = 8e-51
 Identities = 99/127 (77%), Positives = 112/127 (88%)
 Frame = +2

Query: 17  SFFSDKSSKILIAGHKGLVGSAIVKKLSESGYTNLLLRTHSELDLTRQAQVEKFFSTHKP 196
           S  SDKS+KI +AGH+GLVGSAIV+KL E G+TNL+L+TH+ELDLTRQA VE FFS  KP
Sbjct: 10  SSMSDKSAKIFVAGHRGLVGSAIVRKLQEQGFTNLVLKTHAELDLTRQADVESFFSQEKP 69

Query: 197 NYVILAAAKVGGIHANNTYPAEFISINLQIQTNVIHSAYTNEVKKILFLGSSCIYPKYAP 376
            YVILAAAKVGGIHANNTYPA+FI +NLQIQTNVIHSAY + VKK+LFLGSSCIYPK+AP
Sbjct: 70  VYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSCIYPKFAP 129

Query: 377 QPIKEDA 397
           QPI E A
Sbjct: 130 QPIPESA 136


>gb|AAG52124.1|AC010556_6 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER1);
           21556-22494 [Arabidopsis thaliana]
           gi|6016479|gb|AAC02703.2|
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
           [Arabidopsis thaliana] gi|7804474|dbj|BAA95670.1|
           GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           [Arabidopsis thaliana]
          Length = 312

 Score =  203 bits (516), Expect = 1e-50
 Identities = 98/124 (79%), Positives = 111/124 (89%)
 Frame = +2

Query: 26  SDKSSKILIAGHKGLVGSAIVKKLSESGYTNLLLRTHSELDLTRQAQVEKFFSTHKPNYV 205
           SDKS+KI +AGH+GLVGSAIV+KL E G+TNL+L+TH+ELDLTRQA VE FFS  KP YV
Sbjct: 2   SDKSAKIFVAGHRGLVGSAIVRKLQEQGFTNLVLKTHAELDLTRQADVESFFSQEKPVYV 61

Query: 206 ILAAAKVGGIHANNTYPAEFISINLQIQTNVIHSAYTNEVKKILFLGSSCIYPKYAPQPI 385
           ILAAAKVGGIHANNTYPA+FI +NLQIQTNVIHSAY + VKK+LFLGSSCIYPK+APQPI
Sbjct: 62  ILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSCIYPKFAPQPI 121

Query: 386 KEDA 397
            E A
Sbjct: 122 PESA 125


>ref|XP_002888917.1| GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 [Arabidopsis
           lyrata subsp. lyrata] gi|297334758|gb|EFH65176.1|
           GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1
           [Arabidopsis lyrata subsp. lyrata]
          Length = 323

 Score =  202 bits (514), Expect = 2e-50
 Identities = 98/127 (77%), Positives = 111/127 (87%)
 Frame = +2

Query: 17  SFFSDKSSKILIAGHKGLVGSAIVKKLSESGYTNLLLRTHSELDLTRQAQVEKFFSTHKP 196
           S  SDKS+KI +AGH+GLVGSAI +KL E G+TNL+LRTH+ELDLTRQA VE FF+  KP
Sbjct: 10  SSMSDKSAKIFVAGHRGLVGSAIARKLQEQGFTNLVLRTHAELDLTRQADVESFFAQEKP 69

Query: 197 NYVILAAAKVGGIHANNTYPAEFISINLQIQTNVIHSAYTNEVKKILFLGSSCIYPKYAP 376
            YVILAAAKVGGIHANNTYPA+FI +NLQIQTNVIHSAY + VKK+LFLGSSCIYPK+AP
Sbjct: 70  VYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSCIYPKFAP 129

Query: 377 QPIKEDA 397
           QPI E A
Sbjct: 130 QPIPESA 136