BLASTX nr result
ID: Coptis23_contig00004225
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00004225
(1772 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004136610.1| PREDICTED: probable ADP-ribosylation factor ... 307 5e-81
gb|ADN33979.1| GTPase activating protein [Cucumis melo subsp. melo] 301 3e-79
ref|XP_003632552.1| PREDICTED: probable ADP-ribosylation factor ... 270 7e-70
emb|CBI31191.3| unnamed protein product [Vitis vinifera] 270 7e-70
ref|XP_002530953.1| HIV-1 rev binding protein, hrbl, putative [R... 227 7e-57
>ref|XP_004136610.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein
AGD14-like [Cucumis sativus]
gi|449522163|ref|XP_004168097.1| PREDICTED: probable
ADP-ribosylation factor GTPase-activating protein
AGD14-like [Cucumis sativus]
Length = 673
Score = 307 bits (787), Expect = 5e-81
Identities = 220/597 (36%), Positives = 285/597 (47%), Gaps = 95/597 (15%)
Frame = -1
Query: 1772 ARELFLKDWDLQRQRLPDSSNVDRVREFIKNTYVDRKYAGGKTSDKPPRDLQSIRSLDDE 1593
ARE++LKDWD QRQRLP +SNV+++REFIKN YVDRKYAGG+TS+KPPRD+QSIR +DE
Sbjct: 84 AREIYLKDWDFQRQRLPVNSNVEKIREFIKNVYVDRKYAGGRTSEKPPRDMQSIRIHEDE 143
Query: 1592 TRRAXXXXXXXXXXXXXXXXEDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL--- 1425
TRRA EDRKYGKQ L+RKPGSDRG YEGK+S V+SPGRL
Sbjct: 144 TRRASSYHSYSQSPPYDYQYEDRKYGKQAASLTRKPGSDRGRYEGKVSGSVFSPGRLSDQ 203
Query: 1424 -HEERFANEGXXXXXXXXXXXXXXDPFRSDNQSPNFQ--SKLSSPSQYPVKDILVEDKRP 1254
+++RF NEG DPFRS SPNFQ S SSP + +D+L ED R
Sbjct: 204 TYDDRFVNEGYASRVSDFSVSSGGDPFRSGAHSPNFQKDSGFSSPPFHCARDMLNEDTRH 263
Query: 1253 QTMGAYSDLN-------IAKGDPRHTQRTVXXXXXXXXXXXSVTSGSLVDVVSEPAQSAG 1095
Q ++ N I++ + + S S L D V EP A
Sbjct: 264 QISSMSAEANGHRDAYGISRPQRTMSSGSFGSIDSNSTSLKSYNSAGLTDGVLEPEPIAH 323
Query: 1094 TQLGRMXXXXXXXXXXXXXXXVEIDLFSVEFLQK---SGASSIDLFEKPTTSSAPSQDHY 924
L +M + + F F K S SS+DLF+ + AP D +
Sbjct: 324 NNLDKM---PSSQQSSVPGVSISLSFFEEPFAPKPVSSATSSVDLFQSQASLPAPPVDLF 380
Query: 923 --------------TENSTMVPSIDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDL 786
+ S S+ FF + Q+ A+L++ P +P N+GWATFD
Sbjct: 381 QLSSASPSFCENQPQQRSPPPQSLQFFPETNPQH--PATLDKMPLESAVPKNEGWATFDS 438
Query: 785 PQQETSTIATKYVPHTHIPS------------------AXXXXXXXXXMQW-PSVNYTSP 663
PQ +S ++ V PS +QW P+ NY +
Sbjct: 439 PQTTSSVHSSVNVNAVKNPSNVGAFGKLVPPNEGALGKFDPLVSSSAVVQWPPTPNYIAH 498
Query: 662 GPFPSVDNQWHGSLHEVQVLSGPTSTTGG-----------------------------LP 570
P +QWH +L QV + TST LP
Sbjct: 499 DPSLLASSQWHNNLPNAQVPAEVTSTDASWNAFEDAITDLSLQRGKQNTERQVPVQEFLP 558
Query: 569 SI----------------ATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPESQLPPS 438
S T KSTNPFDLPYD D+E ++ L+M+SLQ+ALP +QLP S
Sbjct: 559 SSDGHLFFGVTEGERGTQMTSGKSTNPFDLPYDPDMEQTNMFLDMSSLQSALPNAQLPSS 618
Query: 437 YIEDFNQPWFPSNTIPPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 267
+ +QPWF N P++ A QGGL+ M G+AP Q NI+ SVAS+GGNPFA
Sbjct: 619 LVGG-SQPWFSQNP-APFIPTAGQGGLSLMAGQAPGSQISNITPPESVASIGGNPFA 673
>gb|ADN33979.1| GTPase activating protein [Cucumis melo subsp. melo]
Length = 674
Score = 301 bits (772), Expect = 3e-79
Identities = 219/598 (36%), Positives = 290/598 (48%), Gaps = 96/598 (16%)
Frame = -1
Query: 1772 ARELFLKDWDLQRQRLPDSSNVDRVREFIKNTYVDRKYAGGKTSDKPPRDLQSIRSLDDE 1593
ARE++LKDWD QRQRLP +SNV+++REFIKN YVDRKYAGG+TS+KPPRD+QS+R +DE
Sbjct: 84 AREIYLKDWDFQRQRLPVNSNVEKIREFIKNVYVDRKYAGGRTSEKPPRDMQSLRIHEDE 143
Query: 1592 TRRAXXXXXXXXXXXXXXXXEDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL--- 1425
TRRA EDRKYGKQ L+RKPGSDRG YEGK+S V+SPGRL
Sbjct: 144 TRRASSYHSYSQSPPYDYQYEDRKYGKQAASLTRKPGSDRGRYEGKVSGSVFSPGRLSDQ 203
Query: 1424 -HEERFANEGXXXXXXXXXXXXXXDPFRSDNQSPNFQ--SKLSSPSQYPVKDILVEDKRP 1254
+++RFANEG DPFRS SPNFQ S SSP +D+L +D R
Sbjct: 204 TYDDRFANEGYASRVSDFSVSSGGDPFRSGAHSPNFQKDSGFSSPPFPCARDMLNDDTRH 263
Query: 1253 QTMGAYSDLN-------IAKGDPRHTQRTVXXXXXXXXXXXSVTSGSLVDVVSEPAQSAG 1095
Q ++ N I++ + + S S + D V EP A
Sbjct: 264 QISSMSAEANGHRDAYGISRPQRTMSSGSFGSIDSNSTSLKSYNSAGVTDGVLEPEPIAH 323
Query: 1094 TQLGRMXXXXXXXXXXXXXXXVEIDLFSVEFLQK---SGASSIDLFEKPTTSSAPSQDHY 924
L +M + + F F K + SS+DLF+ + AP D +
Sbjct: 324 NNLDKM---PASQQSSVPGVSISLSFFEEPFAPKPVSAVTSSVDLFQSQASLPAPPVDLF 380
Query: 923 --------------TENSTMVPSIDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDL 786
+ S S+ FF + Q+ A+L++ P +P N+GWATFD
Sbjct: 381 QLSSASPSFCENQPQQRSPPPQSLQFFPETNPQH--PATLDKMPLESAVPKNEGWATFDS 438
Query: 785 PQQETSTIAT----------------KYVPHTH---IPSAXXXXXXXXXMQWPSV-NYTS 666
PQ +S ++ K VP ++ + +QWPS NY++
Sbjct: 439 PQTTSSVHSSVNVNAVKNPSNESAFGKLVPPSNEGALGKFDPFVSSSAVVQWPSTPNYSA 498
Query: 665 PGPFPSVDNQWHGSLHEVQVLSGPTST----------------TGG-------------L 573
P +QWH +L QV + ST GG L
Sbjct: 499 YDPSLLASSQWHTNLPNAQVPAEVMSTDASWNAFEDAITDLSLQGGKQNTELQVPVQEFL 558
Query: 572 PSI----------------ATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPESQLPP 441
PS T KSTNPFDLPYD D+E ++ L+M+SLQ+ALP +QLP
Sbjct: 559 PSSDGHLFFGVTEGERGTQMTSGKSTNPFDLPYDPDMEQTNMFLDMSSLQSALPNAQLPS 618
Query: 440 SYIEDFNQPWFPSNTIPPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 267
S + +QPWF N P++ A QGGL+ M G+AP Q NI+ SVAS+GGNPFA
Sbjct: 619 SLVGG-SQPWFSQNP-APFIPTAAQGGLSLMAGQAPGSQISNITPPESVASIGGNPFA 674
>ref|XP_003632552.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein
AGD14-like [Vitis vinifera]
Length = 677
Score = 270 bits (691), Expect = 7e-70
Identities = 189/437 (43%), Positives = 234/437 (53%), Gaps = 41/437 (9%)
Frame = -1
Query: 1772 ARELFLKDWDLQRQRLPDSSNVDRVREFIKNTYVDRKYAGGKTSDKPPRDLQSIRSLDDE 1593
AREL+LKDWD QRQRLPD SNVD+VR+FIK+ YVDR+YA GKTSDKPPRD Q++R D+E
Sbjct: 84 ARELYLKDWDTQRQRLPDISNVDKVRDFIKSVYVDRRYAVGKTSDKPPRDTQNLRDRDEE 143
Query: 1592 TRRAXXXXXXXXXXXXXXXXEDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL--- 1425
TRRA EDR+YGKQ VL+RKPGSDRG Y+GKISSFVYSPGRL
Sbjct: 144 TRRASSYHSYSQSPPYDYQYEDRRYGKQAAVLTRKPGSDRGLYDGKISSFVYSPGRLSDQ 203
Query: 1424 -HEERFANEGXXXXXXXXXXXXXXDPFRSDNQSPNFQSKL--SSPSQYPVKDILVEDKRP 1254
+E+RFAN+G DPFRS+ QSPNFQ + SSP +P +DIL+ D +
Sbjct: 204 MYEDRFANDG------------SGDPFRSNIQSPNFQKGIGFSSPPIHPSRDILIGDAQQ 251
Query: 1253 QTMGAYSDLNIAKGDPRHTQRTVXXXXXXXXXXXSVT-----SGSLVDVVSEPAQS-AGT 1092
QT+ + N + + QRT S++ S +L+DVVSEP QS G
Sbjct: 252 QTINTVVEENSRRDGFQRPQRTTSSGSFGSFDSNSMSIKSANSSNLMDVVSEPEQSTGGA 311
Query: 1091 QLGRMXXXXXXXXXXXXXXXVEIDLFSVEFLQK---SGASSIDLFEKPTTSSAPSQDHYT 921
++ V +DLF F + S ASSIDLF+ P TSS PS D +
Sbjct: 312 HQDKISELHALPRSSVSGYPVSLDLFDAPFAPETVTSSASSIDLFQLPVTSSVPSVDLFQ 371
Query: 920 ENS--------------TMVPS-IDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDL 786
++S T PS DFFA+I Q AA+L QK +P N+GWATFD
Sbjct: 372 QSSVSSVSSMNPHQASQTSPPSAFDFFAEINQQQ-SAATLHQKLPELSVPKNEGWATFDT 430
Query: 785 PQQETSTI-ATKYVPHTHIPSA--------XXXXXXXXXMQWPSV-NYTSPGPFPSVDNQ 636
P TS T+ IPS MQWP + + GP S+ N
Sbjct: 431 PTPMTSIAGTTENCTPAKIPSTDGGPPGKLDSVLSIDASMQWPLFQDSNAHGPSSSMSNP 490
Query: 635 WHGSLHEVQVLSGPTST 585
W LH VQ + TST
Sbjct: 491 WDQGLHNVQASANVTST 507
Score = 140 bits (352), Expect = 1e-30
Identities = 66/112 (58%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = -1
Query: 599 GPTSTTGGLPSIATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPES-QLPPSYIEDF 423
GP+ +GG S TD+KS+NPFDLPYDSDLE +S+ L+M+SLQAALP + QLP ++
Sbjct: 566 GPSLPSGGTQSQGTDKKSSNPFDLPYDSDLEQSSMFLDMSSLQAALPSNPQLPSVFLGGV 625
Query: 422 NQPWFPSNTIPPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 267
QPWFP + PY+ AAPQGGLAY+ G P+ Q PN +QG VAS+GGNPFA
Sbjct: 626 TQPWFPQKPVTPYIPAAPQGGLAYVAGSTPSSQLPNGQTQGPVASIGGNPFA 677
>emb|CBI31191.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 270 bits (691), Expect = 7e-70
Identities = 189/437 (43%), Positives = 234/437 (53%), Gaps = 41/437 (9%)
Frame = -1
Query: 1772 ARELFLKDWDLQRQRLPDSSNVDRVREFIKNTYVDRKYAGGKTSDKPPRDLQSIRSLDDE 1593
AREL+LKDWD QRQRLPD SNVD+VR+FIK+ YVDR+YA GKTSDKPPRD Q++R D+E
Sbjct: 84 ARELYLKDWDTQRQRLPDISNVDKVRDFIKSVYVDRRYAVGKTSDKPPRDTQNLRDRDEE 143
Query: 1592 TRRAXXXXXXXXXXXXXXXXEDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL--- 1425
TRRA EDR+YGKQ VL+RKPGSDRG Y+GKISSFVYSPGRL
Sbjct: 144 TRRASSYHSYSQSPPYDYQYEDRRYGKQAAVLTRKPGSDRGLYDGKISSFVYSPGRLSDQ 203
Query: 1424 -HEERFANEGXXXXXXXXXXXXXXDPFRSDNQSPNFQSKL--SSPSQYPVKDILVEDKRP 1254
+E+RFAN+G DPFRS+ QSPNFQ + SSP +P +DIL+ D +
Sbjct: 204 MYEDRFANDG------------SGDPFRSNIQSPNFQKGIGFSSPPIHPSRDILIGDAQQ 251
Query: 1253 QTMGAYSDLNIAKGDPRHTQRTVXXXXXXXXXXXSVT-----SGSLVDVVSEPAQS-AGT 1092
QT+ + N + + QRT S++ S +L+DVVSEP QS G
Sbjct: 252 QTINTVVEENSRRDGFQRPQRTTSSGSFGSFDSNSMSIKSANSSNLMDVVSEPEQSTGGA 311
Query: 1091 QLGRMXXXXXXXXXXXXXXXVEIDLFSVEFLQK---SGASSIDLFEKPTTSSAPSQDHYT 921
++ V +DLF F + S ASSIDLF+ P TSS PS D +
Sbjct: 312 HQDKISELHALPRSSVSGYPVSLDLFDAPFAPETVTSSASSIDLFQLPVTSSVPSVDLFQ 371
Query: 920 ENS--------------TMVPS-IDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDL 786
++S T PS DFFA+I Q AA+L QK +P N+GWATFD
Sbjct: 372 QSSVSSVSSMNPHQASQTSPPSAFDFFAEINQQQ-SAATLHQKLPELSVPKNEGWATFDT 430
Query: 785 PQQETSTI-ATKYVPHTHIPSA--------XXXXXXXXXMQWPSV-NYTSPGPFPSVDNQ 636
P TS T+ IPS MQWP + + GP S+ N
Sbjct: 431 PTPMTSIAGTTENCTPAKIPSTDGGPPGKLDSVLSIDASMQWPLFQDSNAHGPSSSMSNP 490
Query: 635 WHGSLHEVQVLSGPTST 585
W LH VQ + TST
Sbjct: 491 WDQGLHNVQASANVTST 507
Score = 135 bits (340), Expect = 3e-29
Identities = 64/106 (60%), Positives = 79/106 (74%), Gaps = 1/106 (0%)
Frame = -1
Query: 581 GGLPSIATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPES-QLPPSYIEDFNQPWFP 405
GG S TD+KS+NPFDLPYDSDLE +S+ L+M+SLQAALP + QLP ++ QPWFP
Sbjct: 590 GGTQSQGTDKKSSNPFDLPYDSDLEQSSMFLDMSSLQAALPSNPQLPSVFLGGVTQPWFP 649
Query: 404 SNTIPPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 267
+ PY+ AAPQGGLAY+ G P+ Q PN +QG VAS+GGNPFA
Sbjct: 650 QKPVTPYIPAAPQGGLAYVAGSTPSSQLPNGQTQGPVASIGGNPFA 695
>ref|XP_002530953.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
gi|223529468|gb|EEF31425.1| HIV-1 rev binding protein,
hrbl, putative [Ricinus communis]
Length = 692
Score = 227 bits (579), Expect = 7e-57
Identities = 165/434 (38%), Positives = 221/434 (50%), Gaps = 37/434 (8%)
Frame = -1
Query: 1772 ARELFLKDWDLQRQRLPDSSNVDRVREFIKNTYVDRKYAGGKTSDKPPRDLQSIRSLDDE 1593
ARE++LKDWD QRQRLPD+SNVD++REFIK+ YVD+KYAGGKT DKPPRDLQ +RS +DE
Sbjct: 84 AREIYLKDWDQQRQRLPDNSNVDKIREFIKSIYVDKKYAGGKTHDKPPRDLQRMRSHEDE 143
Query: 1592 TRRAXXXXXXXXXXXXXXXXEDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL--- 1425
TRRA EDR+YGKQ G+L+RKPGSDRG Y GK+SSF+ SP RL
Sbjct: 144 TRRASSYHSYSQSPPYDYQYEDRRYGKQAGILTRKPGSDRGLYVGKMSSFICSPTRLSDR 203
Query: 1424 -HEERFANEGXXXXXXXXXXXXXXDPFRSDNQSPNFQSKLSSPSQYPVKDILVEDKRPQT 1248
E+RFANEG + + +SPN+ SSP K+IL ED + +
Sbjct: 204 MFEDRFANEGSVSGVSDYSVSSGGELVTT--ESPNY----SSPPIQTPKNILGEDVQQRR 257
Query: 1247 MGAYSDLNIAKGDP--RHTQRTVXXXXXXXXXXXSVT-----SGSLVDVVSEPAQSAGTQ 1089
+ +S+ N +G H+QR+ SV+ S SL D+VSEP Q+ GT
Sbjct: 258 IDLFSEANFKRGAEGIPHSQRSASLGSIGSFDSNSVSVKSFNSSSLADIVSEPEQATGTH 317
Query: 1088 LGRMXXXXXXXXXXXXXXXVEIDLFSVEFLQKSGA---SSIDLFEKPTTSSAPSQD---- 930
+M +D F + K+ A S IDLF+ TS AP +
Sbjct: 318 QDKM---PTFQRMAGSGSYDSLDHFKAPVVPKADASVGSPIDLFQLSATSPAPPVNLFEI 374
Query: 929 -----------HYTENSTMVPSIDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDLP 783
+ T +++ SID F IT Q + + + P+ +P N+GWATFD+
Sbjct: 375 SPLDPAPAMNAYQTPQTSLPSSIDLFGGITQQQSINSVDQNSPELS-IPKNEGWATFDI- 432
Query: 782 QQETSTIA----TKYVPHTHIPSA---XXXXXXXXXMQWPSVNYTSPGPFPSVDNQWHGS 624
Q TST T +V T + S+ MQWP +S S W+
Sbjct: 433 QPTTSTQGNGNLTPFVISTSMYSSAQFDQVSSSDKGMQWPPFQNSSVEESASGSAPWNNG 492
Query: 623 LHEVQVLSGPTSTT 582
LH V+V ++ T
Sbjct: 493 LHNVEVPDNTSAQT 506
Score = 119 bits (297), Expect = 3e-24
Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Frame = -1
Query: 569 SIATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPESQLPPSYI-EDFNQPWFPSNTI 393
S A + KS NPFDLPYDS+LEP ++ L+M+SLQAALP++ L +++ +PWFP + +
Sbjct: 594 SHANNHKSNNPFDLPYDSELEPGNMFLDMSSLQAALPDAHLQSAFLGSGMTEPWFPQDPV 653
Query: 392 PPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 267
YV AAPQGGLAYM G+AP PN+ +QG VA +GGNPFA
Sbjct: 654 TTYVPAAPQGGLAYMGGQAPN---PNVQTQGPVAFVGGNPFA 692