BLASTX nr result
ID: Coptis23_contig00004207
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00004207
(1295 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28616.3| unnamed protein product [Vitis vinifera] 135 1e-42
ref|XP_003534377.1| PREDICTED: zinc finger CCCH domain-containin... 140 8e-40
ref|XP_003533499.1| PREDICTED: zinc finger CCCH domain-containin... 140 2e-39
ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containin... 135 1e-38
ref|XP_003539900.1| PREDICTED: zinc finger CCCH domain-containin... 134 3e-37
>emb|CBI28616.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 135 bits (340), Expect(2) = 1e-42
Identities = 85/160 (53%), Positives = 109/160 (68%), Gaps = 5/160 (3%)
Frame = +3
Query: 456 ARVLVKPYKEKGKVPDRKQQQPM--MELGDFSP-SGITGHDHRDPFDLQLSMQMESSPRM 626
ARVLVKPYKEKGKVPD+KQQQ +E G+FS S TG D RDP+DLQL +M
Sbjct: 348 ARVLVKPYKEKGKVPDKKQQQQQQQVERGEFSACSTPTGLDSRDPYDLQLGARM-----F 402
Query: 627 YNTNELLMRRKLE-QAELQQAMELHSRKLMGLHLFDGNK-HHRRNLSTGTGSVPSPIHSH 800
YNT ++L RRKLE QA+LQQA+EL R+LMGL L D K H R LSTG +PSP HS
Sbjct: 403 YNTQDMLWRRKLEEQADLQQAIELQGRRLMGLQLLDVKKQQHHRALSTG-APIPSPTHSP 461
Query: 801 AYVNQNFMIPTSSPGQSSPMAQLDNCAVSCATSLSLSTIA 920
++ NQ ++P+ +SSP A +NC+ S AT++ ++ +A
Sbjct: 462 SFFNQPLILPSD---RSSPEAPEENCS-SPATAIPVNAVA 497
Score = 65.9 bits (159), Expect(2) = 1e-42
Identities = 37/89 (41%), Positives = 52/89 (58%)
Frame = +1
Query: 1027 EENSKHGNNNTHVSVEHNLPDNPFASPTKSNADPSGMSFTSAAEVGQSIXXXXXXXXXXX 1206
+E+S + +++ S+EHNLPD+PFASPTK + +++EV ++
Sbjct: 525 KESSHNEDSDLPESLEHNLPDSPFASPTKGAGEYLSTFSNASSEVEKNTTVSGSPAVNGN 584
Query: 1207 XXXXXXXLVLPATSTLDMASFKSCYLQMP 1293
+LPATSTLDMASFKSCY QMP
Sbjct: 585 LITSS---LLPATSTLDMASFKSCYFQMP 610
Score = 133 bits (334), Expect = 1e-28
Identities = 67/97 (69%), Positives = 80/97 (82%)
Frame = +1
Query: 49 RLTNASQLLASGSFPYTGSKCSNFLLQQQQNDTLRAAAGLMLDGDDLHHYGRSRIERSDF 228
RL ASQ++AS SFPY+ +KC NFLLQQQQ D+ RAAA LM+ GDD+H +GRSR+ER +F
Sbjct: 212 RLAAASQIMASASFPYS-AKCMNFLLQQQQTDSQRAAAALMM-GDDMHKFGRSRLERGEF 269
Query: 229 LSIPGGMANSASRQIYLTFPADSTFREEDVSNYFSIY 339
++ GM N SRQIYLTFPADSTFREEDVSNYFSI+
Sbjct: 270 MNGGAGMVNPGSRQIYLTFPADSTFREEDVSNYFSIF 306
>ref|XP_003534377.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Glycine max]
Length = 700
Score = 140 bits (352), Expect(2) = 8e-40
Identities = 86/161 (53%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Frame = +3
Query: 456 ARVLVKPYKEKGKVPDRKQQQPMMELGDFSPSGI-TGHDHRDPFDLQLSMQMESSPRMYN 632
ARVLVKPYKEKGKVPD+KQQQ ++ GDFSP G TG D RD FDLQL +M +YN
Sbjct: 425 ARVLVKPYKEKGKVPDKKQQQ-QVDRGDFSPCGTPTGLDARDQFDLQLGGRM-----LYN 478
Query: 633 TNELLMRRKLE-QAELQQAMELHSRKLMGLHLFDGNKHHRRNLSTGTGSVPSPIHSHAYV 809
T ++L RRKLE QA+LQQA+EL SR+LMGL L D KHH+R LSTG+ +PSP HS
Sbjct: 479 TQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGS-PIPSPTHSPNMF 537
Query: 810 NQNFMIPTSSPGQSSPMAQLDNCAVSCATSLSLSTIADNVS 932
NQN ++P+ SP A + S+S N+S
Sbjct: 538 NQN-IVPSFHINSESPKESGSTSAPASTASVSAGQQPVNIS 577
Score = 51.6 bits (122), Expect(2) = 8e-40
Identities = 31/89 (34%), Positives = 43/89 (48%)
Frame = +1
Query: 1027 EENSKHGNNNTHVSVEHNLPDNPFASPTKSNADPSGMSFTSAAEVGQSIXXXXXXXXXXX 1206
+++S H + + +EHNLPD+PFASPTK + D F A G +
Sbjct: 596 KQSSSHDDCDLQECLEHNLPDSPFASPTKGDGD-----FLVAFSNGPNEANDADASAASA 650
Query: 1207 XXXXXXXLVLPATSTLDMASFKSCYLQMP 1293
+LPA S LDM +FKS Q+P
Sbjct: 651 NSKFGTSTLLPAASALDMGTFKSFNCQIP 679
Score = 128 bits (321), Expect = 4e-27
Identities = 67/97 (69%), Positives = 76/97 (78%)
Frame = +1
Query: 49 RLTNASQLLASGSFPYTGSKCSNFLLQQQQNDTLRAAAGLMLDGDDLHHYGRSRIERSDF 228
RL ASQL+AS +FPY+ K NFLLQQQQNDT RAAA ++ +DLH +GRSR+ER+DF
Sbjct: 288 RLAAASQLMASSTFPYS-PKSMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDF 346
Query: 229 LSIPGGMANSASRQIYLTFPADSTFREEDVSNYFSIY 339
M N ASRQIYLTFPADSTFREEDVSNYFSIY
Sbjct: 347 SLNSPVMVNPASRQIYLTFPADSTFREEDVSNYFSIY 383
>ref|XP_003533499.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Glycine max]
Length = 696
Score = 140 bits (352), Expect(2) = 2e-39
Identities = 86/161 (53%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Frame = +3
Query: 456 ARVLVKPYKEKGKVPDRKQQQPMMELGDFSPSGI-TGHDHRDPFDLQLSMQMESSPRMYN 632
ARVLVKPYKEKGKVPD+KQQQ ++ GDFSP G TG D RD FDLQL +M +YN
Sbjct: 419 ARVLVKPYKEKGKVPDKKQQQ-QVDRGDFSPCGTPTGLDARDQFDLQLGGRM-----LYN 472
Query: 633 TNELLMRRKLE-QAELQQAMELHSRKLMGLHLFDGNKHHRRNLSTGTGSVPSPIHSHAYV 809
T ++L RRKLE QA+LQQA+EL SR+LMGL L D KHH+R LSTG+ +PSP HS
Sbjct: 473 TQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGS-PIPSPTHSPNMF 531
Query: 810 NQNFMIPTSSPGQSSPMAQLDNCAVSCATSLSLSTIADNVS 932
NQN ++P+ SP A + S+S N+S
Sbjct: 532 NQN-IVPSFHINSESPKESGSTSAPASTASVSAGQQPVNIS 571
Score = 50.1 bits (118), Expect(2) = 2e-39
Identities = 31/89 (34%), Positives = 45/89 (50%)
Frame = +1
Query: 1027 EENSKHGNNNTHVSVEHNLPDNPFASPTKSNADPSGMSFTSAAEVGQSIXXXXXXXXXXX 1206
+++S H + + +EHNLPD+PFASPTK+ A P F + G ++
Sbjct: 590 KQSSSHDDCDLQECLEHNLPDSPFASPTKA-AVPG--DFMAPFSNGPNVAIDTDASAASV 646
Query: 1207 XXXXXXXLVLPATSTLDMASFKSCYLQMP 1293
+LPA S LDM +FKS Q+P
Sbjct: 647 NFKFGTSTLLPAASPLDMGTFKSYNCQIP 675
Score = 127 bits (318), Expect = 8e-27
Identities = 67/97 (69%), Positives = 75/97 (77%)
Frame = +1
Query: 49 RLTNASQLLASGSFPYTGSKCSNFLLQQQQNDTLRAAAGLMLDGDDLHHYGRSRIERSDF 228
RL ASQL+AS FPY+ K NFLLQQQQNDT RAAA ++ +DLH +GRSR+ER+DF
Sbjct: 282 RLAAASQLMASSIFPYS-PKSMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDF 340
Query: 229 LSIPGGMANSASRQIYLTFPADSTFREEDVSNYFSIY 339
M N ASRQIYLTFPADSTFREEDVSNYFSIY
Sbjct: 341 SLNSPVMVNPASRQIYLTFPADSTFREEDVSNYFSIY 377
>ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Glycine max]
Length = 704
Score = 134 bits (337), Expect(2) = 1e-38
Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 4/163 (2%)
Frame = +3
Query: 456 ARVLVKPYKEKGKVPD--RKQQQPMMELGDFSPSGI-TGHDHRDPFDLQLSMQMESSPRM 626
ARVLVKPYKEKGKVPD RK QQ ++ GDFSP G TG D RD FDLQL +M
Sbjct: 426 ARVLVKPYKEKGKVPDKYRKLQQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRM-----F 480
Query: 627 YNTNELLMRRKLE-QAELQQAMELHSRKLMGLHLFDGNKHHRRNLSTGTGSVPSPIHSHA 803
YNT ++L RRKLE QA+LQQA+EL SR+LMGL L D KHH+R LS G+ +PSP HS
Sbjct: 481 YNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSAGS-PIPSPTHSPN 539
Query: 804 YVNQNFMIPTSSPGQSSPMAQLDNCAVSCATSLSLSTIADNVS 932
NQN ++P+ +P + A + S+S+ N+S
Sbjct: 540 MFNQN-LVPSFHITSEAPKESGSSSAPASIASVSVGQQQVNIS 581
Score = 53.1 bits (126), Expect(2) = 1e-38
Identities = 31/89 (34%), Positives = 44/89 (49%)
Frame = +1
Query: 1027 EENSKHGNNNTHVSVEHNLPDNPFASPTKSNADPSGMSFTSAAEVGQSIXXXXXXXXXXX 1206
+++S H + + +EHNLPD+PFASPTK++ D F A G +
Sbjct: 600 KQSSSHEDRDLQECLEHNLPDSPFASPTKADGD-----FMVAFSNGSNEAIDADGLAASA 654
Query: 1207 XXXXXXXLVLPATSTLDMASFKSCYLQMP 1293
+LPA S LDM +FKS Q+P
Sbjct: 655 NSKFGTSTLLPAASALDMGTFKSFNCQIP 683
Score = 135 bits (340), Expect = 2e-29
Identities = 69/97 (71%), Positives = 78/97 (80%)
Frame = +1
Query: 49 RLTNASQLLASGSFPYTGSKCSNFLLQQQQNDTLRAAAGLMLDGDDLHHYGRSRIERSDF 228
RL ASQL+AS +FPY+ KC NFLLQQQQNDT RAAA ++ +DLH +GRSR+ER+DF
Sbjct: 289 RLAAASQLMASSTFPYS-PKCMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDF 347
Query: 229 LSIPGGMANSASRQIYLTFPADSTFREEDVSNYFSIY 339
GM N ASRQIYLTFPADSTFREEDVSNYFSIY
Sbjct: 348 SLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIY 384
>ref|XP_003539900.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Glycine max]
Length = 698
Score = 133 bits (335), Expect(2) = 3e-37
Identities = 83/162 (51%), Positives = 103/162 (63%), Gaps = 3/162 (1%)
Frame = +3
Query: 456 ARVLVKPYKEKGKVPDRKQQQPMMELGDFSPSGI-TGHDHRD-PFDLQLSMQMESSPRMY 629
ARVLVKPYKEKGKVPD+K QQ ++ GDFSP G TG D RD FDLQL +M Y
Sbjct: 419 ARVLVKPYKEKGKVPDKKLQQQQVDRGDFSPCGTPTGLDARDHQFDLQLGSRM-----FY 473
Query: 630 NTNELLMRRKLE-QAELQQAMELHSRKLMGLHLFDGNKHHRRNLSTGTGSVPSPIHSHAY 806
NT ++L RRKLE QA+LQQA+EL SR+LMGL L D KHH+R L TG+ +PSP HS
Sbjct: 474 NTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALCTGS-PIPSPTHSPNM 532
Query: 807 VNQNFMIPTSSPGQSSPMAQLDNCAVSCATSLSLSTIADNVS 932
NQN ++P+ +P A + S+S + N+S
Sbjct: 533 FNQN-LVPSFHITSEAPKESGSTSAPAGTASVSTGQQSVNIS 573
Score = 49.7 bits (117), Expect(2) = 3e-37
Identities = 31/88 (35%), Positives = 43/88 (48%)
Frame = +1
Query: 1030 ENSKHGNNNTHVSVEHNLPDNPFASPTKSNADPSGMSFTSAAEVGQSIXXXXXXXXXXXX 1209
++S H + + +EHNLPD+PFASPTK+ P G F + G +
Sbjct: 593 QSSSHDDCDLQECLEHNLPDSPFASPTKATG-PGG--FMAPFSNGPNEAIDADASAASAN 649
Query: 1210 XXXXXXLVLPATSTLDMASFKSCYLQMP 1293
+LPA S LDM +FKS Q+P
Sbjct: 650 SKFGTGTLLPAASALDMGTFKSFNCQIP 677
Score = 134 bits (337), Expect = 5e-29
Identities = 68/97 (70%), Positives = 78/97 (80%)
Frame = +1
Query: 49 RLTNASQLLASGSFPYTGSKCSNFLLQQQQNDTLRAAAGLMLDGDDLHHYGRSRIERSDF 228
RL ASQL++S +FPY+ KC NFLLQQQQNDT RAAA ++ +DLH +GRSR+ER+DF
Sbjct: 282 RLAAASQLMSSSTFPYS-PKCMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDF 340
Query: 229 LSIPGGMANSASRQIYLTFPADSTFREEDVSNYFSIY 339
GM N ASRQIYLTFPADSTFREEDVSNYFSIY
Sbjct: 341 SLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIY 377