BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004197
         (1998 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168404.1| PREDICTED: mediator of RNA polymerase II tra...   113   2e-22
ref|XP_004149640.1| PREDICTED: mediator of RNA polymerase II tra...   113   2e-22
ref|XP_002519303.1| conserved hypothetical protein [Ricinus comm...   112   3e-22
ref|NP_001235648.1| uncharacterized protein LOC100306480 [Glycin...   108   7e-21
gb|AFK42947.1| unknown [Lotus japonicus]                              105   3e-20

>ref|XP_004168404.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            21-like [Cucumis sativus]
          Length = 138

 Score =  113 bits (282), Expect = 2e-22
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
 Frame = -2

Query: 1928 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPLANS-SESAIDIAEQPKLM 1752
            MDIISQLQEQVNTIA+LAFNTFGTLQRDAPPVRLSPNYPEP +   +E    IAEQPKLM
Sbjct: 1    MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 1751 SAVLVKAAKQFHGL 1710
            SA LVKAAKQF  L
Sbjct: 61   SAALVKAAKQFDAL 74


>ref|XP_004149640.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            21-like [Cucumis sativus]
          Length = 138

 Score =  113 bits (282), Expect = 2e-22
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
 Frame = -2

Query: 1928 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPLANS-SESAIDIAEQPKLM 1752
            MDIISQLQEQVNTIA+LAFNTFGTLQRDAPPVRLSPNYPEP +   +E    IAEQPKLM
Sbjct: 1    MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 1751 SAVLVKAAKQFHGL 1710
            SA LVKAAKQF  L
Sbjct: 61   SAALVKAAKQFDAL 74


>ref|XP_002519303.1| conserved hypothetical protein [Ricinus communis]
            gi|223541618|gb|EEF43167.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 135

 Score =  112 bits (281), Expect = 3e-22
 Identities = 61/73 (83%), Positives = 63/73 (86%)
 Frame = -2

Query: 1928 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPLANSSESAIDIAEQPKLMS 1749
            MDIISQLQEQV+TIASLAFNT GTLQRDAPPVRLSPNYPEP A  S  A DIA+QPKLMS
Sbjct: 1    MDIISQLQEQVDTIASLAFNTIGTLQRDAPPVRLSPNYPEPPA--SNPAEDIADQPKLMS 58

Query: 1748 AVLVKAAKQFHGL 1710
            A LVKAAKQF  L
Sbjct: 59   AALVKAAKQFDAL 71


>ref|NP_001235648.1| uncharacterized protein LOC100306480 [Glycine max]
            gi|255628677|gb|ACU14683.1| unknown [Glycine max]
          Length = 139

 Score =  108 bits (269), Expect = 7e-21
 Identities = 55/73 (75%), Positives = 60/73 (82%)
 Frame = -2

Query: 1928 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPLANSSESAIDIAEQPKLMS 1749
            MDIISQLQEQVN IA LAFNT GTLQRDAPP RLSPNYPEP A+++E   + +EQPKLMS
Sbjct: 1    MDIISQLQEQVNLIAHLAFNTVGTLQRDAPPNRLSPNYPEPPAHATEDGSNFSEQPKLMS 60

Query: 1748 AVLVKAAKQFHGL 1710
              LVKAAKQF  L
Sbjct: 61   TTLVKAAKQFDAL 73


>gb|AFK42947.1| unknown [Lotus japonicus]
          Length = 139

 Score =  105 bits (263), Expect = 3e-20
 Identities = 54/73 (73%), Positives = 58/73 (79%)
 Frame = -2

Query: 1928 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPLANSSESAIDIAEQPKLMS 1749
            MDIISQLQEQVN IA+LAFNT GTLQRDAPP R+SPNYPEP A  +E     +EQPKLMS
Sbjct: 1    MDIISQLQEQVNLIANLAFNTIGTLQRDAPPNRISPNYPEPPAQPTEDGATFSEQPKLMS 60

Query: 1748 AVLVKAAKQFHGL 1710
              LVKAAKQF  L
Sbjct: 61   TGLVKAAKQFDAL 73