BLASTX nr result

ID: Coptis23_contig00004166 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004166
         (769 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK59275.1|AF378571_1 thaumatin-like protein [Sambucus nigra]      360   e-100
gb|AAK59277.1|AF378573_1 thaumatin-like protein [Sambucus nigra]      350   4e-98
gb|ACZ67185.1| pathogenesis-related thaumatin, partial [Populus ...   344   1e-96
ref|XP_002299521.1| predicted protein [Populus trichocarpa] gi|2...   344   2e-96
gb|AAQ14497.1|AF304007_1 osmotin-like protein [Gossypium hirsutum]    338   3e-96

>gb|AAK59275.1|AF378571_1 thaumatin-like protein [Sambucus nigra]
          Length = 226

 Score =  360 bits (924), Expect(2) = e-100
 Identities = 158/185 (85%), Positives = 170/185 (91%)
 Frame = -2

Query: 558 CPYTVWAAAVPGGGRQLNPGQSWTLNVNAGTVQARIWGRTNCNFDGSGRGRCETGDCNGI 379
           CP+TVWAAAVPGGGRQLN GQ W+L+V AGT  ARIW RTNCNFDG+GRGRC+TGDCNG+
Sbjct: 33  CPFTVWAAAVPGGGRQLNRGQVWSLDVPAGTRGARIWARTNCNFDGAGRGRCQTGDCNGL 92

Query: 378 LSCQGFGQPPNTLAEYALNQFNNLDFFDISLVDGFNIPMDFSPLSGGCRGILCTADINGQ 199
           LSCQ +G PPNTLAEYALNQFNNLDFFDISLVDGFN+ MDFSP  G  RGI CTADINGQ
Sbjct: 93  LSCQAYGAPPNTLAEYALNQFNNLDFFDISLVDGFNVAMDFSPTGGCARGIQCTADINGQ 152

Query: 198 CPNELRAPGGCNNPCTVFRTNEFCCTNGQGSCGPTNLSRFFKDRCRDAYSYPQDDPTSTF 19
           CPNELRAPGGCNNPCTV+RTNE+CCTNGQG+CGPTN SRFFK+RCRDAYSYPQDDPTSTF
Sbjct: 153 CPNELRAPGGCNNPCTVYRTNEYCCTNGQGTCGPTNFSRFFKERCRDAYSYPQDDPTSTF 212

Query: 18  TCPGG 4
           TCPGG
Sbjct: 213 TCPGG 217



 Score = 32.0 bits (71), Expect(2) = e-100
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -3

Query: 716 SICFSLFFVVLI--TYAHAALFEIRNQCPYT 630
           S+  S+FFV+ +  + A+AA F IRN CP+T
Sbjct: 6   SLPISIFFVIALISSSAYAANFNIRNNCPFT 36


>gb|AAK59277.1|AF378573_1 thaumatin-like protein [Sambucus nigra]
          Length = 226

 Score =  350 bits (897), Expect(2) = 4e-98
 Identities = 155/185 (83%), Positives = 166/185 (89%)
 Frame = -2

Query: 558 CPYTVWAAAVPGGGRQLNPGQSWTLNVNAGTVQARIWGRTNCNFDGSGRGRCETGDCNGI 379
           CP+TVWAAAVPGGGRQLN GQ W+L+V A T  ARIW RTNCNFDG+GRGRC+TGDCNG+
Sbjct: 33  CPFTVWAAAVPGGGRQLNRGQVWSLDVPARTAGARIWARTNCNFDGAGRGRCQTGDCNGL 92

Query: 378 LSCQGFGQPPNTLAEYALNQFNNLDFFDISLVDGFNIPMDFSPLSGGCRGILCTADINGQ 199
           L+CQ +G PPNTLAEYALNQFNNLDFFDISLVDGFN+ MDFSP  G  RGI CTADINGQ
Sbjct: 93  LACQAYGTPPNTLAEYALNQFNNLDFFDISLVDGFNVAMDFSPTGGCARGIQCTADINGQ 152

Query: 198 CPNELRAPGGCNNPCTVFRTNEFCCTNGQGSCGPTNLSRFFKDRCRDAYSYPQDDPTSTF 19
           CPN LRAPGGCNNPCTVFRTNE+CCTNGQGSC  TNLSRFFK+RCRDAYSYPQDD TSTF
Sbjct: 153 CPNVLRAPGGCNNPCTVFRTNEYCCTNGQGSCSATNLSRFFKERCRDAYSYPQDDATSTF 212

Query: 18  TCPGG 4
           TCPGG
Sbjct: 213 TCPGG 217



 Score = 35.0 bits (79), Expect(2) = 4e-98
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -3

Query: 716 SICFSLFFVVLITY--AHAALFEIRNQCPYT 630
           S+  S+FFV+ + +  AHAA F IRN CP+T
Sbjct: 6   SLPISIFFVISLIFSSAHAANFNIRNNCPFT 36


>gb|ACZ67185.1| pathogenesis-related thaumatin, partial [Populus deltoides]
          Length = 241

 Score =  344 bits (882), Expect(2) = 1e-96
 Identities = 153/189 (80%), Positives = 167/189 (88%), Gaps = 4/189 (2%)
 Frame = -2

Query: 558 CPYTVWAAAVPGGGRQLNPGQSWTLNVNAGTVQARIWGRTNCNFDGSGRGRCETGDCNGI 379
           CPYTVWAAA PGGGR+L+ GQ+W LNV AGT  ARIWGRTNCNFDGSGRGRC+TGDC G 
Sbjct: 32  CPYTVWAAASPGGGRRLDRGQTWYLNVPAGTSMARIWGRTNCNFDGSGRGRCQTGDCTGG 91

Query: 378 LSCQGFGQPPNTLAEYALNQFNNLDFFDISLVDGFNIPMDFSPLSGG----CRGILCTAD 211
           L C+G+G PPNTLAEYALNQF NLDF+DISLVDGFNIPM+FSP S G    C+ +LCTAD
Sbjct: 92  LECKGWGVPPNTLAEYALNQFGNLDFYDISLVDGFNIPMEFSPTSSGGSGKCQALLCTAD 151

Query: 210 INGQCPNELRAPGGCNNPCTVFRTNEFCCTNGQGSCGPTNLSRFFKDRCRDAYSYPQDDP 31
           INGQCPNELRAPGGCNNPCTVF+TNE+CCTNGQGSCGPT  SRFFKDRC  +YSYPQDDP
Sbjct: 152 INGQCPNELRAPGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRCPTSYSYPQDDP 211

Query: 30  TSTFTCPGG 4
           +STFTCPGG
Sbjct: 212 SSTFTCPGG 220



 Score = 36.2 bits (82), Expect(2) = 1e-96
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = -3

Query: 734 MSSSRNSICFSLFFVVLITYAHAALFEIRNQCPYT 630
           MS     +  SL F +LI   +AA FEIRN CPYT
Sbjct: 1   MSHLTKFLTSSLLFSLLIISTNAATFEIRNNCPYT 35


>ref|XP_002299521.1| predicted protein [Populus trichocarpa] gi|222846779|gb|EEE84326.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score =  344 bits (882), Expect(2) = 2e-96
 Identities = 153/189 (80%), Positives = 167/189 (88%), Gaps = 4/189 (2%)
 Frame = -2

Query: 558 CPYTVWAAAVPGGGRQLNPGQSWTLNVNAGTVQARIWGRTNCNFDGSGRGRCETGDCNGI 379
           CPYTVWAAA PGGGR+L+ GQ+W LNV AGT  ARIWGRTNCNFDGSGRGRC+TGDC G 
Sbjct: 22  CPYTVWAAASPGGGRRLDRGQTWYLNVPAGTSMARIWGRTNCNFDGSGRGRCQTGDCTGG 81

Query: 378 LSCQGFGQPPNTLAEYALNQFNNLDFFDISLVDGFNIPMDFSPLSGG----CRGILCTAD 211
           L C+G+G PPNTLAEYALNQF NLDF+DISLVDGFNIPM+FSP S G    C+ +LCTAD
Sbjct: 82  LECKGWGVPPNTLAEYALNQFGNLDFYDISLVDGFNIPMEFSPTSSGGSGKCQALLCTAD 141

Query: 210 INGQCPNELRAPGGCNNPCTVFRTNEFCCTNGQGSCGPTNLSRFFKDRCRDAYSYPQDDP 31
           INGQCPNELRAPGGCNNPCTVF+TNE+CCTNGQGSCGPT  SRFFKDRC  +YSYPQDDP
Sbjct: 142 INGQCPNELRAPGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRCPTSYSYPQDDP 201

Query: 30  TSTFTCPGG 4
           +STFTCPGG
Sbjct: 202 SSTFTCPGG 210



 Score = 35.4 bits (80), Expect(2) = 2e-96
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -3

Query: 704 SLFFVVLITYAHAALFEIRNQCPYT 630
           SL F +LI   +AA FEIRN CPYT
Sbjct: 1   SLLFSLLIISTNAATFEIRNNCPYT 25


>gb|AAQ14497.1|AF304007_1 osmotin-like protein [Gossypium hirsutum]
          Length = 242

 Score =  338 bits (867), Expect(2) = 3e-96
 Identities = 143/185 (77%), Positives = 161/185 (87%)
 Frame = -2

Query: 558 CPYTVWAAAVPGGGRQLNPGQSWTLNVNAGTVQARIWGRTNCNFDGSGRGRCETGDCNGI 379
           CPYTVWAAA PGGGR+L+P QSWT+NV AGT  ARIWGRTNCNFD +GRG C+TGDC G+
Sbjct: 33  CPYTVWAAASPGGGRRLDPRQSWTINVPAGTAMARIWGRTNCNFDANGRGHCQTGDCGGL 92

Query: 378 LSCQGFGQPPNTLAEYALNQFNNLDFFDISLVDGFNIPMDFSPLSGGCRGILCTADINGQ 199
           L CQG+G PPNTLAEY+LNQF N+DF+DISL+DGFNIPM F P +GGC  I CTAD+ GQ
Sbjct: 93  LECQGWGVPPNTLAEYSLNQFGNMDFYDISLIDGFNIPMVFGPTNGGCHNIRCTADLKGQ 152

Query: 198 CPNELRAPGGCNNPCTVFRTNEFCCTNGQGSCGPTNLSRFFKDRCRDAYSYPQDDPTSTF 19
           CPNELRAPGGCNNPCTVF+TNE+CCT G G+CGPT  SRFFKDRC D+YSYPQDDP+STF
Sbjct: 153 CPNELRAPGGCNNPCTVFKTNEYCCTQGYGTCGPTYFSRFFKDRCHDSYSYPQDDPSSTF 212

Query: 18  TCPGG 4
           TCP G
Sbjct: 213 TCPAG 217



 Score = 40.4 bits (93), Expect(2) = 3e-96
 Identities = 18/24 (75%), Positives = 19/24 (79%)
 Frame = -3

Query: 701 LFFVVLITYAHAALFEIRNQCPYT 630
           LFF VL   AHAA FEIRN+CPYT
Sbjct: 13  LFFSVLFISAHAARFEIRNECPYT 36


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