BLASTX nr result

ID: Coptis23_contig00004023 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004023
         (851 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 ...   144   3e-32
ref|XP_002305996.1| high mobility group family [Populus trichoca...   141   2e-31
ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-...   140   3e-31
ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus...   140   4e-31
ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-...   139   1e-30

>ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
           gi|297740668|emb|CBI30850.3| unnamed protein product
           [Vitis vinifera]
          Length = 175

 Score =  144 bits (363), Expect = 3e-32
 Identities = 65/80 (81%), Positives = 73/80 (91%)
 Frame = +2

Query: 257 DKHKPKKPPTAFFYYLEDFRGGYQEQNPDVKSMRDVGKACGEKWKTMTYEEKVKYYDIAT 436
           D  KPKKPPTAFFY+LEDFR  +QEQNPDVKSMRD+GKACGEKWKTMTYEEKV+YYDIAT
Sbjct: 84  DSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIAT 143

Query: 437 EKRKEFEQAMADYERRKERG 496
           EKR EF++AMADY +R+E G
Sbjct: 144 EKRAEFDRAMADYIKRQESG 163


>ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
           gi|222848960|gb|EEE86507.1| high mobility group family
           [Populus trichocarpa]
          Length = 165

 Score =  141 bits (356), Expect = 2e-31
 Identities = 65/82 (79%), Positives = 73/82 (89%)
 Frame = +2

Query: 251 KEDKHKPKKPPTAFFYYLEDFRGGYQEQNPDVKSMRDVGKACGEKWKTMTYEEKVKYYDI 430
           K D  KPKKPPTAFFY+LEDFR  +QEQNPDVKSMR+VGKACGEKWKTMTYEEKVKYYDI
Sbjct: 71  KFDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMREVGKACGEKWKTMTYEEKVKYYDI 130

Query: 431 ATEKRKEFEQAMADYERRKERG 496
           ATEKR EF++A ++Y +RKE G
Sbjct: 131 ATEKRAEFDRATSEYIKRKESG 152


>ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
           gi|449505924|ref|XP_004162605.1| PREDICTED: high
           mobility group B protein 14-like [Cucumis sativus]
          Length = 161

 Score =  140 bits (354), Expect = 3e-31
 Identities = 63/82 (76%), Positives = 74/82 (90%)
 Frame = +2

Query: 251 KEDKHKPKKPPTAFFYYLEDFRGGYQEQNPDVKSMRDVGKACGEKWKTMTYEEKVKYYDI 430
           K D +KPKKPPTAFFY+L+DFR  +QEQNPDVK+MRDVGKACGEKWKTMTYEEKV+YYDI
Sbjct: 67  KFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDI 126

Query: 431 ATEKRKEFEQAMADYERRKERG 496
           ATEKR EF++AM +Y++R E G
Sbjct: 127 ATEKRAEFDKAMTEYKKRMESG 148


>ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
           gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B,
           putative [Ricinus communis]
          Length = 198

 Score =  140 bits (353), Expect = 4e-31
 Identities = 63/82 (76%), Positives = 73/82 (89%)
 Frame = +2

Query: 251 KEDKHKPKKPPTAFFYYLEDFRGGYQEQNPDVKSMRDVGKACGEKWKTMTYEEKVKYYDI 430
           K D  KPKKPPTAFFY+LEDFR  +Q+QNPDVKSMR++GKACGEKWK MTYEEKVKYYDI
Sbjct: 104 KLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACGEKWKMMTYEEKVKYYDI 163

Query: 431 ATEKRKEFEQAMADYERRKERG 496
           ATEKR EF++AMA+Y ++KE G
Sbjct: 164 ATEKRAEFDKAMAEYIKKKESG 185


>ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
          Length = 148

 Score =  139 bits (349), Expect = 1e-30
 Identities = 61/80 (76%), Positives = 72/80 (90%)
 Frame = +2

Query: 257 DKHKPKKPPTAFFYYLEDFRGGYQEQNPDVKSMRDVGKACGEKWKTMTYEEKVKYYDIAT 436
           D  KPKKPPTAFFY+LEDFR  +QEQNPDVKSMRD+GKACGEKWKTMTYEEKV+YYDIAT
Sbjct: 56  DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIAT 115

Query: 437 EKRKEFEQAMADYERRKERG 496
           +KR+EF+ AMA++ ++ E G
Sbjct: 116 KKREEFDNAMAEFNKKMENG 135


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