BLASTX nr result

ID: Coptis23_contig00004008 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004008
         (212 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004139526.1| PREDICTED: ABC transporter I family member 2...    77   2e-12
ref|XP_003536037.1| PREDICTED: ABC transporter I family member 2...    74   1e-11
gb|ACU19627.1| unknown [Glycine max]                                   74   1e-11
ref|XP_002308160.1| ABC transporter family protein [Populus tric...    74   2e-11
gb|ADE77121.1| unknown [Picea sitchensis]                              73   2e-11

>ref|XP_004139526.1| PREDICTED: ABC transporter I family member 20-like [Cucumis
           sativus] gi|449518083|ref|XP_004166073.1| PREDICTED: ABC
           transporter I family member 20-like [Cucumis sativus]
          Length = 326

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 34/40 (85%), Positives = 37/40 (92%)
 Frame = +3

Query: 93  TIVIDNLRFTYPGIDGHPPPGSTPLIQNFSLSLNAGERCL 212
           TIVID LRFTYPGIDGHPP GS PLI+NFSL+LNAG+RCL
Sbjct: 7   TIVIDRLRFTYPGIDGHPPSGSKPLIENFSLTLNAGDRCL 46


>ref|XP_003536037.1| PREDICTED: ABC transporter I family member 20-like [Glycine max]
          Length = 333

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +3

Query: 93  TIVIDNLRFTYPGIDGHPPPGSTPLIQNFSLSLNAGERCL 212
           TIVI +LRFTYPGIDGHPPPGSTPLIQ+F+L+L++G RCL
Sbjct: 14  TIVIKDLRFTYPGIDGHPPPGSTPLIQDFNLTLSSGHRCL 53


>gb|ACU19627.1| unknown [Glycine max]
          Length = 333

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +3

Query: 93  TIVIDNLRFTYPGIDGHPPPGSTPLIQNFSLSLNAGERCL 212
           TIVI +LRFTYPGIDGHPPPGSTPLIQ+F+L+L++G RCL
Sbjct: 14  TIVIKDLRFTYPGIDGHPPPGSTPLIQDFNLTLSSGHRCL 53


>ref|XP_002308160.1| ABC transporter family protein [Populus trichocarpa]
           gi|222854136|gb|EEE91683.1| ABC transporter family
           protein [Populus trichocarpa]
          Length = 325

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = +3

Query: 93  TIVIDNLRFTYPGIDGHPPPGSTPLIQNFSLSLNAGERCL 212
           TIVI+ LRFTYPGIDGHPPPGS PLI  FSL+LN+G+RCL
Sbjct: 7   TIVINGLRFTYPGIDGHPPPGSKPLIDEFSLNLNSGDRCL 46


>gb|ADE77121.1| unknown [Picea sitchensis]
          Length = 329

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = +3

Query: 93  TIVIDNLRFTYPGIDGHPPPGSTPLIQNFSLSLNAGERCL 212
           T+ I+NL FTYPGIDGHPPPG+ PLIQNFSL+L AG+RCL
Sbjct: 10  TVEINNLNFTYPGIDGHPPPGAKPLIQNFSLTLRAGDRCL 49


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