BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004001
         (4006 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1623   0.0  
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...  1622   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1604   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1598   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1546   0.0  

>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1623 bits (4203), Expect = 0.0
 Identities = 796/1195 (66%), Positives = 961/1195 (80%), Gaps = 4/1195 (0%)
 Frame = -1

Query: 4006 EKERKEMIVTQVSFGGFDKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVEN 3827
            E   K+M+VTQ+S GGFD+ V A EL  +LED IG  + RCRLK S TPPES P+F++ +
Sbjct: 4    EGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGS-VDRCRLKTSSTPPESYPDFEIID 62

Query: 3826 ISDVQKTDDYEKVEPHAFVHFASPSSATKAKNAAGRCELFYNRNPLLVNLGPESSFHSNQ 3647
             + +++T+DY+KVEPHAFVHF SP +AT A +AAG+ ELF +  PL V+LGPE+ FH NQ
Sbjct: 63   TAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQ 122

Query: 3646 KRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTKETAFSF 3467
            +RR T PFKF +V  EIG L S +E+  GW+GP+SGVDF+VDPFDGTCK LFTK+TAFSF
Sbjct: 123  RRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSF 182

Query: 3466 KSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDSVP 3287
            K   K AV+KCNFK+EF + EI EV+Q +++S+LI+L+QLSS+P V+YRTADDDI ++VP
Sbjct: 183  KGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVP 242

Query: 3286 FDLLDDEDPWIRTTDFTPFGVVGRSNSYLISMSPRCGPKLSKAMKYFKERRVPCR--SFL 3113
            FDLLDD+DPWIRTTDFT  G +GR NSY IS+ PR G KL KAM Y + RRV     S  
Sbjct: 243  FDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPK 302

Query: 3112 QLLKVLEEPCAHVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSDKFFELLRS 2936
              L+V +EP   +P +  FFC+   + I F V+++VNAVMHKGIINQ QLSDKFF+LLRS
Sbjct: 303  WQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRS 362

Query: 2935 QSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNVEVHRLIITP 2756
            Q K++NI AL H+  YR PVFDAY+RLK+V KWLLKNPK +K  + LD  VEV RL+ITP
Sbjct: 363  QQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITP 422

Query: 2755 TRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVKDITSNS 2576
            ++AYCLPPEVELSNRVLR YKE +DRFLRVTFMDEG   +N NVL+YYVAPIVK ITSNS
Sbjct: 423  SKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNS 482

Query: 2575 FPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKEWMG 2396
            FPQKT VFKRVKT+L++GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKK +V  IK WMG
Sbjct: 483  FPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMG 542

Query: 2395 KFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAE 2216
            KF N+NVAKCAARMGQCFSSTY TV+VPS EV  + PDI+RN + FSDGIG + PDLA E
Sbjct: 543  KFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAME 601

Query: 2215 VAEKLQLTETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWTR 2036
            VAEKL+L  TPSAYQIRYAGCKGV+A WP  +DGIRL  RPSMNKF S H I+E+ +WTR
Sbjct: 602  VAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTR 661

Query: 2035 FQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNTA 1856
            FQPGFLNRQ+VTLLS+L VP+++F K+Q+SM+  L+QMLT+ D+A DV+I+SC ++GNTA
Sbjct: 662  FQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTA 721

Query: 1855 ALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQC 1676
            A+M+S GFKPQ EPHL+G+++CIRA+Q   L +KARIFV S RWLMGCLDELG+LEQGQC
Sbjct: 722  AIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQC 781

Query: 1675 FIQVSSPSLEDCFVKHGFKLSGPNINLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALHH 1496
            FIQVSSPSLE+CF+KHG + S    NLKVIKG V +AKNPCLHPGD+R+LEAVD P L H
Sbjct: 782  FIQVSSPSLENCFLKHGSRFSAQK-NLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEH 840

Query: 1495 LVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKALPR 1316
            LVDCLVFPQ GDRPHSNEASGSDLDGDLYFVTW+  LIPPS++SWP M Y  AEAKAL R
Sbjct: 841  LVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAR 900

Query: 1315 AVNHKDIIEFFSRNMVTENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKTG 1136
             V   DII+FF++NMV ENLG ICNAHVVHAD+SEYGA+DE C+ LAE AATAVD PKTG
Sbjct: 901  EVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTG 960

Query: 1135 KFVNMPHSLRPKMYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLDSPYDPEGI 956
            K V +P  L+PKMYPDFMGKE+F++Y+S KILG +YR+IK+A+ E+V  S +  +  + +
Sbjct: 961  KLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKV 1020

Query: 955  PYDADIEIACSNDLIQEAWIHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYNNRKQ 776
            P+D D+ I  S D I +AWIHKCSYDGQLN LLGQYKV  E+EVV+GHVWSMP+Y +RKQ
Sbjct: 1021 PFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQ 1080

Query: 775  RELKEKLKHAYKSLKNEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQWVKK 596
             EL E+LKHAY SLK EF+ +FE +N D  +   D+K ++YEQKASAWYQVTYHP WVKK
Sbjct: 1081 GELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKK 1140

Query: 595  SLELRRIEE-DDDRVPAFLSFAWIPAEYLVRIKIRRLGTDNLNTCQPKNSLVSYL 434
            SLEL+  +E   +RV   LSFAWI A+YL RIKIRR GT N+++ +P NSL  +L
Sbjct: 1141 SLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFL 1193


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score = 1622 bits (4199), Expect = 0.0
 Identities = 774/1197 (64%), Positives = 963/1197 (80%), Gaps = 5/1197 (0%)
 Frame = -1

Query: 4006 EKERKEMIVTQVSFGGFDKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVEN 3827
            E   KE +VTQVS GGFD  V AK+L ++L+  IG ++WRCRLK SWTPPES PNF++ +
Sbjct: 4    EGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFEITD 62

Query: 3826 ISDVQKTDDYEKVEPHAFVHFASPSSATKAKNAAGRCELFYNRNPLLVNLGPESSFHSNQ 3647
            I+ +++T+DY +V PHAFVHFA P SAT A NA+GRCELF N   L V+LGP++ F  NQ
Sbjct: 63   ITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQ 122

Query: 3646 KRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTKETAFSF 3467
            +RR T PFK S+V  EIG L S +EF VGW+GP SGVDF+VDPFDGTCK  F++ TAFS 
Sbjct: 123  RRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSL 182

Query: 3466 KSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDSVP 3287
            KST++ AV+KC+FK+EF + +I E+ QY   S L++L+QL+SAP V+YRTADDDI   VP
Sbjct: 183  KSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVP 242

Query: 3286 FDLLDDEDPWIRTTDFTPFGVVGRSNSYLISMSPRCGPKLSKAMKYFKERRVPC---RSF 3116
            FDLLDD+DPWIRTTDFT  G +GR +SY +S+ PR G KL KA+KY KERRV      + 
Sbjct: 243  FDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENH 302

Query: 3115 LQLLKVLEEPCAHVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSDKFFELLR 2939
             + +++L+EP   +P +  FFC+   + I+FEV+++VNAVMHKGI NQ QLS+ FF+LLR
Sbjct: 303  RRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLR 362

Query: 2938 SQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNVEVHRLIIT 2759
            +Q  EVN+ AL H+  YRRPVF+AY+RLK VQ+WLLKNP   K  + L   VE+ RL+IT
Sbjct: 363  NQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVIT 422

Query: 2758 PTRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVKDITSN 2579
            PT+AYCLPPEVELSNRVLRKYK+ ADRFLRVTFMDEG  ++N+NVL+YYVAPIV+DITSN
Sbjct: 423  PTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSN 482

Query: 2578 SFPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKEWM 2399
            SFPQKT +FKRV+++L+EGFYLCGR+YSFLAFS+NQLRD+SAWFF+E++ I+V D+K WM
Sbjct: 483  SFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWM 542

Query: 2398 GKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAA 2219
            GKF N+N+AKCAARMGQCFSSTY T++VP +EVN D PDIERN +VFSDGIGI+TPDLA 
Sbjct: 543  GKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAR 602

Query: 2218 EVAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITW 2042
            EVAEKL+L  + P AYQIRYAGCKGV+A WPGK DG+RL LRPSMNKF+S+H  +E+ +W
Sbjct: 603  EVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSW 662

Query: 2041 TRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGN 1862
            TRFQPGFLNRQ++TLLS+L VP+ VF K+Q++MV  L+QM  N D+A DV+ +SC D+GN
Sbjct: 663  TRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGN 722

Query: 1861 TAALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQG 1682
             AA+M+S GFKP  EPHL+G+++C+RA+QL DL +K RIFV S RWLMGCLDELG+LEQG
Sbjct: 723  VAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQG 782

Query: 1681 QCFIQVSSPSLEDCFVKHGFKLSGPNINLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPAL 1502
            QCFIQVS+ SLE CF+KHG K S    NL+VIKGTVV+AKNPCLHPGD+RVLEAVD+P L
Sbjct: 783  QCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGL 842

Query: 1501 HHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKAL 1322
            HHL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW  M Y  AEAK L
Sbjct: 843  HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLL 902

Query: 1321 PRAVNHKDIIEFFSRNMVTENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPK 1142
             R VNH+DIIEFF++NMV +NLG ICNAHVVHAD SEYGA D+ C+ LAELAATAVD PK
Sbjct: 903  ARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPK 962

Query: 1141 TGKFVNMPHSLRPKMYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLDSPYDPE 962
            TGK V+MP  L+PKMYPDFMGKE+++SYKS+KILG LYR+IK+A++E+V +S +    P 
Sbjct: 963  TGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPG 1022

Query: 961  GIPYDADIEIACSNDLIQEAWIHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYNNR 782
             IPYD+D+E+  ++D I +AW  KCSYDGQLN LL QYKV  E+EVV+GH+WSMP+Y++R
Sbjct: 1023 DIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSR 1082

Query: 781  KQRELKEKLKHAYKSLKNEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQWV 602
            KQ ELK++LKH+Y SLK EF+ +FE ++ +  + +  +K ++YEQKASAWYQV YHP WV
Sbjct: 1083 KQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWV 1142

Query: 601  KKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRRLGTDNLNTCQPKNSLVSYLA 431
            KKSLEL+  + D       LSFAWI A+YL RIKIR   T N+++ +P NSL  YLA
Sbjct: 1143 KKSLELQ--DPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLA 1197


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1604 bits (4153), Expect = 0.0
 Identities = 771/1195 (64%), Positives = 952/1195 (79%), Gaps = 3/1195 (0%)
 Frame = -1

Query: 4006 EKERKEMIVTQVSFGGFDKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVEN 3827
            E   KE +VTQVS GGFD  V AK+L ++LE EIG ++WRCRLK SWTPPES PNF++ +
Sbjct: 4    EGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEITD 62

Query: 3826 ISDVQKTDDYEKVEPHAFVHFASPSSATKAKNAAGRCELFYNRNPLLVNLGPESSFHSNQ 3647
            I+ + +T+DY +VEPHAFVHFA P SAT A +AA RCELF N   L  +LGPE+ F  NQ
Sbjct: 63   ITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQ 122

Query: 3646 KRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTKETAFSF 3467
            +RR T PFK S V  EIGTL S +EF VGW+GP +GVDF+VDPFDGTC+  F++ TAFSF
Sbjct: 123  RRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSF 182

Query: 3466 KSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDSVP 3287
            KSTA+ AV+KC+FK+EF + +I E+KQY   S L++L+QL+SAPRV+YRTADDDI  SVP
Sbjct: 183  KSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVP 242

Query: 3286 FDLLDDEDPWIRTTDFTPFGVVGRSNSYLISMSPRCGPKLSKAMKYFKERRVPCRSFLQL 3107
            FDLLDD+DPWIRTTDFT  G +GR +SY +S+ PR GPKL KA+ + KERRV      + 
Sbjct: 243  FDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRP 302

Query: 3106 LKVLEEPCAHVP-PNSFFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSDKFFELLRSQS 2930
            +++ +EP   +P  + FFC+   + I+F+V+++VNAVMHKGI NQ QLS+ FF+LLR+Q 
Sbjct: 303  IRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQP 362

Query: 2929 KEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNVEVHRLIITPTR 2750
             EVN+ AL H+Y YRRPVFDAYK+LK+ Q+WLLKNPK  K  + LD   E+ RL+ITPT+
Sbjct: 363  TEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTK 422

Query: 2749 AYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVKDITSNSFP 2570
            AYCLPPEVELSNRVLRKYK+ ADRFLRVTFMDEG   +N+N L+Y+ APIV+ ITS SFP
Sbjct: 423  AYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFP 482

Query: 2569 QKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKEWMGKF 2390
            QKT +FKRV+++L+EGFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ INV  IK WMGKF
Sbjct: 483  QKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKF 542

Query: 2389 KNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAEVA 2210
             NKN+AKCAARMGQCFSSTY T++VP +EVN D PDI+RN + FSDGIG++TPDLA EVA
Sbjct: 543  TNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVA 602

Query: 2209 EKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWTRF 2033
            EKL+   + P AYQIRYAGCKGV+A WP + DGIRL LR SMNKF+S+H I+E+ +WTRF
Sbjct: 603  EKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRF 662

Query: 2032 QPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNTAA 1853
            QPGFLNRQ++TLLS+L VP+ VF K+Q+ MV  L+QML + D+A DV+ +SC ++GN AA
Sbjct: 663  QPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAA 722

Query: 1852 LMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQCF 1673
            +M+S GFKPQ EPHL+G+++C+RA+QL  L +KARIFV S RWLMGCLDELG+LEQGQCF
Sbjct: 723  IMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCF 782

Query: 1672 IQVSSPSLEDCFVKHGFKLSGPNINLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALHHL 1493
            IQVS+  LE+CFVKHG K S    NL+V+KGTVV+AKNPCLHPGDIR+LEAVD P LHHL
Sbjct: 783  IQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHL 842

Query: 1492 VDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKALPRA 1313
             DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW  M Y  AEAK L R 
Sbjct: 843  YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRP 902

Query: 1312 VNHKDIIEFFSRNMVTENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKTGK 1133
            VNH+DI+EFF++NM  ENLG ICNAHVV AD SEYGA+DEKC+ LAELAATAVD PKTGK
Sbjct: 903  VNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGK 962

Query: 1132 FVNMPHSLRPKMYPDFMGKEDFKSYKSKKILGVLYRKIKNAF-EEEVLSSLDSPYDPEGI 956
             V+MP  L+PK+YPDFMGKE+ +SYKSKKILG LYR+IK+A+ +++V +S +  +    I
Sbjct: 963  IVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDI 1022

Query: 955  PYDADIEIACSNDLIQEAWIHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYNNRKQ 776
            PYD D+E+  + D I +AW  KCSYDGQLN LL QYKV  E+EVV+GHVWSMP+ ++RKQ
Sbjct: 1023 PYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQ 1082

Query: 775  RELKEKLKHAYKSLKNEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQWVKK 596
             +LKE+LKH+Y  LK EF+ VFE ++ D  +   D+K  +YE+KASAWYQVTYHP W++K
Sbjct: 1083 GDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQK 1142

Query: 595  SLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRRLGTDNLNTCQPKNSLVSYLA 431
            SLEL+  + D   +   LSFAWI A+YL RIKIR     N+++ +P NSL  YLA
Sbjct: 1143 SLELQ--DSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLA 1195


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1598 bits (4138), Expect = 0.0
 Identities = 774/1200 (64%), Positives = 943/1200 (78%), Gaps = 8/1200 (0%)
 Frame = -1

Query: 4006 EKERKEMIVTQVSFGGFDKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVEN 3827
            ++  KE +VTQVSFGGFDKDV A++L  +L++EIG  +WRCRLK SWTPPES PNF++ +
Sbjct: 4    KRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIG-QVWRCRLKTSWTPPESYPNFEITD 62

Query: 3826 ISDVQKTDDYEKVEPHAFVHFASPSSATKAKNAAGRCELFYNRNPLLVNLGPESSFHSNQ 3647
             + +Q+ D Y +VEPHAFVHFASP SAT AKNAAG CELF+N  P+ V+LGPE+ FH NQ
Sbjct: 63   TAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQ 122

Query: 3646 KRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTKETAFSF 3467
            +RR T PFK S+V  EIGTL S +EFLVGW+GP SGVDF+VDPFDG CK  FT++TAFSF
Sbjct: 123  RRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSF 182

Query: 3466 KSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDSVP 3287
            K T + AV++C+FKLEF + +I E+KQY + S L++L+QL+SAP V+YRTADDDI   VP
Sbjct: 183  KGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVP 242

Query: 3286 FDLLDDEDPWIRTTDFTPFGVVGRSNSYLISMSPRCGPKLSKAMKYFKERRVPCRSFLQL 3107
            FDLLDD+DPWIRTTDFTP G +GR NSY +S+ PR G KL +A+ + +ERRV      + 
Sbjct: 243  FDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRP 302

Query: 3106 LKVLEEPCAHVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSDKFFELLRSQS 2930
            L V  EP   +P +  FFC+   + + F ++++VNAVMHKGI NQ QLSD FF+LLR+Q 
Sbjct: 303  LHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQP 362

Query: 2929 KEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNVEVHRLIITPTR 2750
             +VNI AL H+  Y+ PVFDA+KRLK VQ+WLLKNPK  + S+ LD  VE+ RL ITPTR
Sbjct: 363  LDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTR 422

Query: 2749 AYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVKDITSNSFP 2570
            AYCLPPEVELSNRVLR+YK+ AD+FLRVTFMDEG   +N N L+YY APIV+DITSNSF 
Sbjct: 423  AYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFS 482

Query: 2569 QKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKEWMGKF 2390
            QKT +FKRVK++L++GFYLCGRKYSFLAFSSNQLRDRSAWFFAED K +V+ I+ WMGKF
Sbjct: 483  QKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKF 542

Query: 2389 KNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAEVA 2210
             N+N+AKCAARMGQCFSSTY TV+VPS E   D PDIERN+++FSDGIG++TPDLA EVA
Sbjct: 543  TNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVA 602

Query: 2209 EKLQL-TETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWTRF 2033
            EKL+L    P AYQIRYAGCKGV+A WP   DGIRL LR SMNKF S+H  +E+ +WTRF
Sbjct: 603  EKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRF 662

Query: 2032 QPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNTAA 1853
            QPGFLNRQ++TLLS+L VP+E+F K+Q  MV  L+QM  + D+A DV+ +SC ++GNTAA
Sbjct: 663  QPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAA 722

Query: 1852 LMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQCF 1673
            +M+S GF P+ EPHL G+++CIRA+QL  L +K RIFV S RWLMGCLDELG+LE GQCF
Sbjct: 723  IMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCF 782

Query: 1672 IQVSSPSLEDCFVKHGFKLSGPNINLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALHHL 1493
            IQVS+PSLE CF KHG + S     L+V+KGTVV+AKNPCLHPGDIR+LEAVD P LHHL
Sbjct: 783  IQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHL 842

Query: 1492 VDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKALPRA 1313
             DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW  M Y  AEAK L R 
Sbjct: 843  HDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRP 902

Query: 1312 VNHKDIIEFFSRNMVTENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKTGK 1133
            VNH+DII+FF++NMV ENLG ICNAHVVHAD SEYGA+DE CI+LAELAATAVD PKTGK
Sbjct: 903  VNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGK 962

Query: 1132 FVNMPHSLRPKMYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLDSPYDPE--- 962
             V MP  L+PK+YPDFMGKED++SY S KILG LYR++K+ + ++     D+    E   
Sbjct: 963  LVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNL 1022

Query: 961  ---GIPYDADIEIACSNDLIQEAWIHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRY 791
                IPYD D+E++ S+D I +AW  KCSYDGQL  LL QYKV  E+EVV+GH+WSMP+ 
Sbjct: 1023 VRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKC 1082

Query: 790  NNRKQRELKEKLKHAYKSLKNEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHP 611
            N+RKQ ELKE+LK +Y SLK EF+ VFE ++ D  +   D+K  +YEQKASAWYQV YHP
Sbjct: 1083 NSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHP 1142

Query: 610  QWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRRLGTDNLNTCQPKNSLVSYLA 431
            +WV KS+EL+  E D     + LSFAWI A+YL RIKIR  G D ++T +P NSLV YLA
Sbjct: 1143 KWVNKSMELQ--EPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLA 1200


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1546 bits (4003), Expect = 0.0
 Identities = 763/1194 (63%), Positives = 935/1194 (78%), Gaps = 4/1194 (0%)
 Frame = -1

Query: 3994 KEMIVTQVSFGGFDKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVENISDV 3815
            KE++VTQ+S GGFD DV AK L+++LE+++G  +WRCRLK S TPP+S P + ++    V
Sbjct: 8    KELVVTQISVGGFDNDVNAKMLSEYLEEQVG-QVWRCRLKISSTPPDSYPTYDID-AEKV 65

Query: 3814 QKTDDYEKVEPHAFVHFASPSSATKAKNAAGRCELFYNRNPLLVNLGPESSFHSNQKRRN 3635
            Q+ ++YEKV PHAFVHFAS  SA  A  AAG  EL   + PL+V+LGPE+ +  NQ+RR 
Sbjct: 66   QRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRT 125

Query: 3634 TDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTKETAFSFKSTA 3455
            T PFKFS+V  E+G L S ++F+VGW+GP +GVDF+VDPF+GTCKILFTK+TAFSF+  A
Sbjct: 126  TMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEA 185

Query: 3454 KQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDSVPFDLL 3275
            + A++KCNFK+EF + EI E+K+ K+ ++L++L QL+S+P VFYRTADDDI +SV FDLL
Sbjct: 186  RHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLL 245

Query: 3274 DDEDPWIRTTDFTPFGVVGRSNSYLISMSPRCGPKLSKAMKYFKERRVPCRSFL--QLLK 3101
            DD+D WIRTTD T  G +GR N+Y IS+ PR GP   KAM YF  RRVP       ++L+
Sbjct: 246  DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLR 305

Query: 3100 VLEEPCAHVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSDKFFELLRSQSKE 2924
            V +EP   V  +  FFC    + ISF V+++VNAV+HKGI+NQ Q++++FF LLRS  +E
Sbjct: 306  VKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEE 364

Query: 2923 VNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNVEVHRLIITPTRAY 2744
            VN  AL HM+ Y+ PV DA ++L  +QKWLLKNPK +  +  LD  VEV RL+ITPT+AY
Sbjct: 365  VNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAY 424

Query: 2743 CLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVKDITSNSFPQK 2564
            CLPP VELSNRVLR YK  ADRFLRVTFMDEG   LN NVL+YY A IV++ITSNS PQ+
Sbjct: 425  CLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQR 484

Query: 2563 TAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKEWMGKFKN 2384
            TA+F+RVK++LS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAED KI V  I  WMG+F N
Sbjct: 485  TAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN 544

Query: 2383 KNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAEVAEK 2204
            +NVAKCAARMGQCFSSTY TV+VPS EVN + PDIERN +VFSDGIG+++ DLA EVAEK
Sbjct: 545  RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEK 604

Query: 2203 LQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWTRFQP 2027
            L L+   PSAYQIRYAGCKGV+A WP K+DGIRL LRPSM KF+S+H I+E+ +WTRFQP
Sbjct: 605  LHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQP 664

Query: 2026 GFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNTAALM 1847
            GFLNRQ+VTLLSSL V + +F ++Q  M+  LD+ML + D+A DVI +SC + GNTAALM
Sbjct: 665  GFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALM 724

Query: 1846 ISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQCFIQ 1667
            +S GFKPQ EPHL+G++S IRASQLGDL +KARIFV S RWLMGCLDELG LEQGQCFIQ
Sbjct: 725  LSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQ 784

Query: 1666 VSSPSLEDCFVKHGFKLSGPNINLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALHHLVD 1487
            VSSPSLE+CFVKHG K S    NL+V+KG VV+AKNPCLHPGD+R+LEAVD+P+L HL D
Sbjct: 785  VSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYD 844

Query: 1486 CLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKALPRAVN 1307
            CLVFPQ GDRPHSNEASGSDLDGDLYFVTWD NLIPPS++SW  M+Y PAE K L R VN
Sbjct: 845  CLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVN 904

Query: 1306 HKDIIEFFSRNMVTENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKTGKFV 1127
            H DII+FFS+NMV E+LG ICNAHVVHAD SE+GA+DEKC++LAELAA AVD PKTGK V
Sbjct: 905  HMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLV 964

Query: 1126 NMPHSLRPKMYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLDSPYDPEGIPYD 947
             MP  L+PKMYPDFMGKE+F+SYKSKKILG LYR++K+  + E   S      P+ IPYD
Sbjct: 965  TMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYD 1024

Query: 946  ADIEIACSNDLIQEAWIHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYNNRKQREL 767
              +EI  S   I +AW  KCSYDGQLN LLGQYKV+ E+EVV+G++WSMP+YN +KQ EL
Sbjct: 1025 TTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGEL 1084

Query: 766  KEKLKHAYKSLKNEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQWVKKSLE 587
            KE+LKHAY +L+ EF+NVFE + PD      D+K  MYE+KASAWYQVTYHP WV +SLE
Sbjct: 1085 KERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLE 1144

Query: 586  LRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRRLGTDNLNTCQPKNSLVSYLASH 425
            L+  +   + V   LSFAWI A+YL RIKIR       ++ +P NSL  YL  +
Sbjct: 1145 LQLADAVSNTV--MLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDN 1196