BLASTX nr result
ID: Coptis23_contig00003971
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00003971
(1521 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003610227.1| Ycf68 [Medicago truncatula] gi|355511282|gb|... 123 e-104
ref|XP_003627937.1| hypothetical protein MTR_8g040260 [Medicago ... 162 5e-68
gb|AAV44205.1| unknow protein [Oryza sativa Japonica Group] 243 1e-61
ref|XP_003604154.1| Ycf68 protein [Medicago truncatula] gi|35550... 100 4e-52
ref|XP_003599576.1| Ycf68 protein [Medicago truncatula] gi|35548... 98 2e-51
>ref|XP_003610227.1| Ycf68 [Medicago truncatula] gi|355511282|gb|AES92424.1| Ycf68
[Medicago truncatula]
Length = 501
Score = 123 bits (308), Expect(4) = e-104
Identities = 67/108 (62%), Positives = 74/108 (68%)
Frame = +3
Query: 192 GNNSWKRLLIPRRLRSKRRNPPEEGLASD*LVGEAIAYQGDDQ*LVREDDQPHWD*DTAQ 371
GNNSWKRLLIPR+LRS+RRNPP++GLA Q
Sbjct: 85 GNNSWKRLLIPRKLRSERRNPPKDGLA--------------------------------Q 112
Query: 372 TPTGGSSGEFSAMGESLTEQCRVEVEGLRVVNFFSRRRSNDGIWGISI 515
TPTGGSSGEFSAMGESLTEQCRVEV+GLRV+NFFS RR+NDGI GISI
Sbjct: 113 TPTGGSSGEFSAMGESLTEQCRVEVKGLRVMNFFSWRRNNDGIRGISI 160
Score = 119 bits (297), Expect(4) = e-104
Identities = 70/136 (51%), Positives = 77/136 (56%)
Frame = +1
Query: 886 VSRLGSTFARMKLKGIDGGPHKRWSMWFNSMQSEEPYQGLTCRESS*KRGVPSGTRIQVV 1065
+SRLGSTFARMKLKGIDGGPHKRW + + +E S +G
Sbjct: 218 ISRLGSTFARMKLKGIDGGPHKRWRL---------DMPRILLKERSAFGNADTG------ 262
Query: 1066 HGCRQLVP*GVGLSPATSATLVFSCHR*VWNPEQTAGDKPEEGEDDVKSSCPLCPGRHTC 1245
G LS A + W TAGDKPEEGEDDVKSSCPLCPGRHTC
Sbjct: 263 ---------GAWLSSARAVRC--------W----TAGDKPEEGEDDVKSSCPLCPGRHTC 301
Query: 1246 YNGRDKGSRSREGELT 1293
YNGRDKGSR REG+ T
Sbjct: 302 YNGRDKGSRPREGDHT 317
Score = 114 bits (285), Expect(4) = e-104
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +2
Query: 608 VRRQIPGLNPGQAVETAKLEYGRGRGNFRWSGEMRRDRKEHQRRKHSAGPTLTLRDE 778
VRRQIPGLNPGQ V+T KLEYGRGRGNFRWSGEMRRDRKEHQ RKHSAGPTLTLRDE
Sbjct: 161 VRRQIPGLNPGQVVKTTKLEYGRGRGNFRWSGEMRRDRKEHQWRKHSAGPTLTLRDE 217
Score = 95.1 bits (235), Expect(4) = e-104
Identities = 44/45 (97%), Positives = 44/45 (97%)
Frame = +3
Query: 1374 HTAVNSFPGLVHTARHTMGAGHARSRYLNRKGGDAEGRASDWSEV 1508
HTAVNSFPGLVHTARHTMGAGHARSRYLNRK GDAEGRASDWSEV
Sbjct: 316 HTAVNSFPGLVHTARHTMGAGHARSRYLNRKEGDAEGRASDWSEV 360
Score = 68.2 bits (165), Expect = 6e-09
Identities = 44/80 (55%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Frame = +2
Query: 38 EAISNATMNLMESSILAQDERWRHA*HMQVGREVVFPVADG*VTRKNLP--LGGEQQ--- 202
EAISN T NLMES ILAQDERWRHA HMQV REVVFPV + R +P L E++
Sbjct: 47 EAISNVTRNLMESLILAQDERWRHALHMQVEREVVFPVGNNSWKRLLIPRKLRSERRNPP 106
Query: 203 LETAANTP*AEEQKEESARG 262
+ A TP E SA G
Sbjct: 107 KDGLAQTPTGGSSGEFSAMG 126
>ref|XP_003627937.1| hypothetical protein MTR_8g040260 [Medicago truncatula]
gi|355521959|gb|AET02413.1| hypothetical protein
MTR_8g040260 [Medicago truncatula]
Length = 241
Score = 162 bits (409), Expect(2) = 5e-68
Identities = 81/108 (75%), Positives = 83/108 (76%)
Frame = -1
Query: 414 RPLRKIPHCCLP*ESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCS 235
RP HC + S V DHPLGP TDH LGKLLPHQLANQTRAPP ADSSF S
Sbjct: 134 RPFTSTRHCSIRLSRIAENSSLVDDHPLGPTTDHHLGKLLPHQLANQTRAPPWADSSFRS 193
Query: 234 SAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSRPTCMC*ACRQRSS 91
SAYGVLA VSSCCSPPKG+FLRVTHPSATGNTTSR CMC ACRQRSS
Sbjct: 194 SAYGVLATVSSCCSPPKGKFLRVTHPSATGNTTSRSICMCKACRQRSS 241
Score = 124 bits (311), Expect(2) = 5e-68
Identities = 70/106 (66%), Positives = 73/106 (68%)
Frame = -2
Query: 836 YPSFTARTTGVSNPIRSPSFRLXXXXXXXXXAFAVGVLSDLCAFHRSTGNSLCPYRTPAW 657
YPSFTARTT VSNPIRSPSFRL AFA+GV SDL AFH STGNSL
Sbjct: 38 YPSFTARTTRVSNPIRSPSFRLSVLVSAQQSAFAIGVPSDLYAFHHSTGNSL-------- 89
Query: 656 QFPPPVQG*ALGFDGGLEKPPTDALRPIIPDNACILCLTAAAGTEL 519
+L FDG L+KPPTDALRPII DNACILCLTAAAGTEL
Sbjct: 90 ---------SLRFDGELKKPPTDALRPIISDNACILCLTAAAGTEL 126
Score = 67.8 bits (164), Expect = 7e-09
Identities = 34/50 (68%), Positives = 38/50 (76%)
Frame = -3
Query: 1087 ARADDSHAPPVSAFPKAPLSFKRIRDMSSPGKVLRFASN*TTCSTACAGP 938
ARADD+HAPPVS FPKA LSFKRI MSSPGKVLRF + T +T + P
Sbjct: 2 ARADDNHAPPVSVFPKALLSFKRIHGMSSPGKVLRFYPSFTARTTRVSNP 51
>gb|AAV44205.1| unknow protein [Oryza sativa Japonica Group]
Length = 265
Score = 243 bits (620), Expect = 1e-61
Identities = 122/127 (96%), Positives = 123/127 (96%)
Frame = -3
Query: 901 SPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFF 722
SPGGILNALATALHGS RT PSIHRLRLGLLG LIPFAPLAFVSQCQCRPSRVLSPLVFF
Sbjct: 3 SPGGILNALATALHGSSRTTPSIHRLRLGLLGSLIPFAPLAFVSQCQCRPSRVLSPLVFF 62
Query: 721 PISAHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVL 542
PIS HFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVL
Sbjct: 63 PISMHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVL 122
Query: 541 PRLLAQS 521
PRLLAQ+
Sbjct: 123 PRLLAQN 129
Score = 124 bits (310), Expect = 9e-26
Identities = 56/59 (94%), Positives = 58/59 (98%)
Frame = -3
Query: 178 VLTRYSPVRHWKHHFPSDLHVLSMPPAFILSQDRTLHEIHSCITYSFLVRRQSGFGIVF 2
VLTRYSPVRHWKHHFP DLHVLSMPPAFILSQD+TLHEIHSCITYSFL+RRQSGFGIVF
Sbjct: 194 VLTRYSPVRHWKHHFPFDLHVLSMPPAFILSQDQTLHEIHSCITYSFLIRRQSGFGIVF 252
Score = 119 bits (297), Expect = 3e-24
Identities = 62/77 (80%), Positives = 66/77 (85%)
Frame = -2
Query: 533 AGTELADAYSPDTVIASSPGKEVHDPQAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSV 354
A + L + +TVI SSP KEV DP AF+LHAALLRQAFAHCGKFPTAASRRSLGRVSV
Sbjct: 118 ASSVLPRLLAQNTVIVSSPRKEVDDPWAFHLHAALLRQAFAHCGKFPTAASRRSLGRVSV 177
Query: 353 PVWLIILSDQLLIIALV 303
PVWLIILSDQLLIIALV
Sbjct: 178 PVWLIILSDQLLIIALV 194
>ref|XP_003604154.1| Ycf68 protein [Medicago truncatula] gi|355505209|gb|AES86351.1| Ycf68
protein [Medicago truncatula]
Length = 237
Score = 100 bits (249), Expect(3) = 4e-52
Identities = 47/48 (97%), Positives = 47/48 (97%)
Frame = +3
Query: 1374 HTAVNSFPGLVHTARHTMGAGHARSRYLNRKGGDAEGRASDWSEVVTR 1517
HTAVNSFPGLVHTARHTMGAGHARSRYLNRK GDAEGRASDWSEVVTR
Sbjct: 72 HTAVNSFPGLVHTARHTMGAGHARSRYLNRKEGDAEGRASDWSEVVTR 119
Score = 89.7 bits (221), Expect(3) = 4e-52
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +1
Query: 1168 TAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRSREGELT 1293
TAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSR REG+ T
Sbjct: 32 TAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRPREGDHT 73
Score = 63.9 bits (154), Expect(3) = 4e-52
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +3
Query: 1008 MSRILLKERGAFGNADTGGAWLSSARAVRCW 1100
M RILLKER AFGNADTGGAWLSSARAVRCW
Sbjct: 1 MPRILLKERSAFGNADTGGAWLSSARAVRCW 31
>ref|XP_003599576.1| Ycf68 protein [Medicago truncatula] gi|355488624|gb|AES69827.1| Ycf68
protein [Medicago truncatula]
Length = 237
Score = 97.8 bits (242), Expect(3) = 2e-51
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = +3
Query: 1374 HTAVNSFPGLVHTARHTMGAGHARSRYLNRKGGDAEGRASDWSEVVTR 1517
+TAVNSFPGLVHTARHTMGAGHARSRYLNRK GDAEGRASDWSEVVTR
Sbjct: 72 NTAVNSFPGLVHTARHTMGAGHARSRYLNRKEGDAEGRASDWSEVVTR 119
Score = 89.7 bits (221), Expect(3) = 2e-51
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +1
Query: 1168 TAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRSREGELT 1293
TAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSR REG+ T
Sbjct: 32 TAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRPREGDNT 73
Score = 63.9 bits (154), Expect(3) = 2e-51
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +3
Query: 1008 MSRILLKERGAFGNADTGGAWLSSARAVRCW 1100
M RILLKER AFGNADTGGAWLSSARAVRCW
Sbjct: 1 MPRILLKERSAFGNADTGGAWLSSARAVRCW 31