BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003942
         (303 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24890.3| unnamed protein product [Vitis vinifera]              110   2e-22
gb|AAK94425.1|AF398144_1 60S ribosomal protein L144 [Brassica ra...   108   6e-22
ref|XP_004148567.1| PREDICTED: 60S ribosomal protein L44-like [C...   107   8e-22
gb|AAA34366.1| ribosomal protein L41 [Candida maltosa]                107   8e-22
ref|XP_002278981.1| PREDICTED: 60S ribosomal protein L44-like [V...   107   8e-22

>emb|CBI24890.3| unnamed protein product [Vitis vinifera]
          Length = 140

 Score =  110 bits (274), Expect = 2e-22
 Identities = 55/77 (71%), Positives = 56/77 (72%)
 Frame = +2

Query: 71  YKLRSPPLAVMVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGY 250
           + L  P    MVNVP              HTLHKVTQYKKGKDSLAAQGKRRYDRKQSGY
Sbjct: 26  FSLHPPKPPKMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGY 85

Query: 251 GGQTKPVFHKKAKTTKK 301
           GGQTKPVFHKKAKTTKK
Sbjct: 86  GGQTKPVFHKKAKTTKK 102


>gb|AAK94425.1|AF398144_1 60S ribosomal protein L144 [Brassica rapa subsp. pekinensis]
          Length = 119

 Score =  108 bits (269), Expect = 6e-22
 Identities = 53/69 (76%), Positives = 54/69 (78%)
 Frame = +2

Query: 95  AVMVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 274
           A MVN+P              HTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF
Sbjct: 13  AKMVNIPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 72

Query: 275 HKKAKTTKK 301
           HKKAKTTKK
Sbjct: 73  HKKAKTTKK 81


>ref|XP_004148567.1| PREDICTED: 60S ribosomal protein L44-like [Cucumis sativus]
           gi|449524244|ref|XP_004169133.1| PREDICTED: 60S
           ribosomal protein L44-like [Cucumis sativus]
          Length = 116

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/67 (79%), Positives = 53/67 (79%)
 Frame = +2

Query: 101 MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 280
           MVNVP              HTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 281 KAKTTKK 301
           KAKTTKK
Sbjct: 61  KAKTTKK 67


>gb|AAA34366.1| ribosomal protein L41 [Candida maltosa]
          Length = 105

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/67 (79%), Positives = 53/67 (79%)
 Frame = +2

Query: 101 MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 280
           MVNVP              HTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 281 KAKTTKK 301
           KAKTTKK
Sbjct: 61  KAKTTKK 67


>ref|XP_002278981.1| PREDICTED: 60S ribosomal protein L44-like [Vitis vinifera]
           gi|255543771|ref|XP_002512948.1| 60S ribosomal protein
           L44 [Ricinus communis] gi|449436355|ref|XP_004135958.1|
           PREDICTED: 60S ribosomal protein L44-like [Cucumis
           sativus] gi|449461677|ref|XP_004148568.1| PREDICTED: 60S
           ribosomal protein L44-like [Cucumis sativus]
           gi|449488799|ref|XP_004158175.1| PREDICTED: 60S
           ribosomal protein L44-like [Cucumis sativus]
           gi|449524246|ref|XP_004169134.1| PREDICTED: 60S
           ribosomal protein L44-like [Cucumis sativus]
           gi|2500380|sp|Q96499.3|RL44_GOSHI RecName: Full=60S
           ribosomal protein L44 gi|1553129|gb|AAB08726.1|
           ribosomal protein L44 isoform a [Gossypium hirsutum]
           gi|1553131|gb|AAB08727.1| ribosomal protein L44 isoform
           b [Gossypium hirsutum] gi|223547959|gb|EEF49451.1| 60S
           ribosomal protein L44 [Ricinus communis]
          Length = 105

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/67 (79%), Positives = 53/67 (79%)
 Frame = +2

Query: 101 MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 280
           MVNVP              HTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 281 KAKTTKK 301
           KAKTTKK
Sbjct: 61  KAKTTKK 67