BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003916
         (1408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]                  260   5e-67
ref|XP_002530460.1| transcription cofactor, putative [Ricinus co...   258   3e-66
ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II tra...   244   3e-62
ref|NP_173030.1| uncharacterized protein [Arabidopsis thaliana] ...   206   9e-51
ref|XP_002892882.1| hypothetical protein ARALYDRAFT_471776 [Arab...   204   5e-50

>gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]
          Length = 1405

 Score =  260 bits (665), Expect = 5e-67
 Identities = 141/227 (62%), Positives = 170/227 (74%), Gaps = 9/227 (3%)
 Frame = -1

Query: 1303 SIMDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELN 1124
            ++MD NNWRP P    + ++T DWRT LQPDSR RIVNKIMDTLKRHLP SG +G+ EL 
Sbjct: 14   NLMDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELK 73

Query: 1123 KIAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQN---TGVPTNSAVSGQNPADPGSH 953
            KIA RFEEKIY AA+SQSDYLRKISLKML+ME+KSQN     + +N+  S   P DPG  
Sbjct: 74   KIAGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPG-- 131

Query: 952  SMQSQVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTP 779
            SMQ+QV NQG   P    +NQSQVRQQL+SQNIQN  +S GVQ S+ L SAL SV+GL+ 
Sbjct: 132  SMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMSSAGVQGSSGLSSALPSVSGLSQ 191

Query: 778  SNMANAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMPGR 650
            S + + +GQ+ N+QNMSGISQN+G     QGVPSN+F N+QRQ+ GR
Sbjct: 192  SPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGR 238


>ref|XP_002530460.1| transcription cofactor, putative [Ricinus communis]
            gi|223530005|gb|EEF31930.1| transcription cofactor,
            putative [Ricinus communis]
          Length = 1382

 Score =  258 bits (658), Expect = 3e-66
 Identities = 140/224 (62%), Positives = 162/224 (72%), Gaps = 10/224 (4%)
 Frame = -1

Query: 1297 MDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNKI 1118
            MD NNWRP  Q     V+T DWR TLQPDSR RIVNKIM+TLKRHLP SG EG+ EL KI
Sbjct: 1    MDTNNWRPTAQGGEPAVDTGDWRATLQPDSRQRIVNKIMETLKRHLPFSGQEGLEELKKI 60

Query: 1117 AVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQN---TGVPTNSAVSGQNPADPG-SHS 950
            AVRFEEKIY AATSQSDYLRKISLKMLTME+KSQN     VP N   +   P DPG S S
Sbjct: 61   AVRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNNVPNSVPPNPFGNNNRPPDPGASQS 120

Query: 949  MQSQVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPS 776
            MQ QV NQG   P    +NQ+Q RQQL+SQNIQN   S G+Q+S  L SAL  V+GL  +
Sbjct: 121  MQPQVHNQGQSLPVPLSANQTQTRQQLLSQNIQNNMASTGIQSSAGLTSALPPVSGLAQT 180

Query: 775  NMANAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMP 656
            ++ N +GQ+SN+QN+SG+ QN+      QGVPSN+F N+QRQMP
Sbjct: 181  SIPNVVGQNSNMQNISGVPQNSAGNSLGQGVPSNMFANSQRQMP 224


>ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            15a-like, partial [Cucumis sativus]
          Length = 589

 Score =  244 bits (624), Expect = 3e-62
 Identities = 135/226 (59%), Positives = 164/226 (72%), Gaps = 10/226 (4%)
 Frame = -1

Query: 1297 MDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNKI 1118
            MD NNWRP    EP M ET DWR+ LQPDSR RIVNKIM+TLKRHLP+SG EG++EL KI
Sbjct: 1    MDNNNWRPTQAVEPGM-ETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 59

Query: 1117 AVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQ---NTGVPTNSAVSGQNPADPGSHSM 947
            AVRFEEKI+ AATSQSDYLRKISLKMLTMETK+Q      +P+N  V G  P D  S SM
Sbjct: 60   AVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNPLPSNPMVPGNKPLDASSQSM 119

Query: 946  QSQVRNQGPPSVAL---SNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPS 776
            Q  V NQG PS+++   SNQ Q RQQ++ QNI N       Q+S+SL SA+  V GL  S
Sbjct: 120  QPPVINQG-PSISVPQSSNQPQPRQQILQQNIPNNIVP---QSSSSLSSAVPPVAGLASS 175

Query: 775  NMANAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMPGR 650
            +M+N +GQ+ N+QN+SG+ QN+G     QGVPSN+F+N+QR + GR
Sbjct: 176  SMSNMVGQNPNIQNVSGVPQNSGGNAMGQGVPSNVFSNSQRPLQGR 221


>ref|NP_173030.1| uncharacterized protein [Arabidopsis thaliana]
            gi|395406776|sp|F4I171.1|MD15A_ARATH RecName:
            Full=Mediator of RNA polymerase II transcription subunit
            15a gi|332191243|gb|AEE29364.1| uncharacterized protein
            [Arabidopsis thaliana]
          Length = 1335

 Score =  206 bits (525), Expect = 9e-51
 Identities = 115/220 (52%), Positives = 150/220 (68%), Gaps = 4/220 (1%)
 Frame = -1

Query: 1297 MDGNNWRPA-PQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNK 1121
            MD NNWRP+ P  EP M +T DWRT L PDSR +IVNKIM+TLK+HLP SGPEGI EL +
Sbjct: 1    MDNNNWRPSLPNGEPAM-DTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRR 59

Query: 1120 IAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQNTGVPTNSAVSGQNPADPGSHSMQS 941
            IA RFEEKI+  A +Q+DYLRKIS+KMLTMETKSQN      +  S   PA     S+ S
Sbjct: 60   IAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNA-----AGSSAAIPAANNGTSIDS 114

Query: 940  QVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPSNMA 767
               NQG   P    +NQSQ  Q L+SQ +QN T S G+  S +LPS++  V+ +T +N  
Sbjct: 115  IPTNQGQLLPGSLSTNQSQAPQPLLSQTMQNNTAS-GMTGSTALPSSMPPVSSITNNNTT 173

Query: 766  NAIGQSSNLQNMSGISQ-NTGVQGVPSNIFTNTQRQMPGR 650
            + + Q++N+QN++G+ Q ++G  G+ SN+F+  QRQM GR
Sbjct: 174  SVVNQNANMQNVAGMLQDSSGQHGLSSNMFSGPQRQMLGR 213


>ref|XP_002892882.1| hypothetical protein ARALYDRAFT_471776 [Arabidopsis lyrata subsp.
            lyrata] gi|297338724|gb|EFH69141.1| hypothetical protein
            ARALYDRAFT_471776 [Arabidopsis lyrata subsp. lyrata]
          Length = 1343

 Score =  204 bits (519), Expect = 5e-50
 Identities = 113/220 (51%), Positives = 151/220 (68%), Gaps = 4/220 (1%)
 Frame = -1

Query: 1297 MDGNNWRPA-PQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNK 1121
            MD NNWRP+ P  EP M ++ DWRT L PDSR +IVNKIM+TLK+HLP SGPEGI EL +
Sbjct: 1    MDNNNWRPSLPNGEPAM-DSGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRR 59

Query: 1120 IAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQNTGVPTNSAVSGQNPADPGSHSMQS 941
            IA RFEEKI+  A +Q+DYLRKIS+KMLTMETKSQN      +  S   PA     S+ S
Sbjct: 60   IAARFEEKIFSGAVNQTDYLRKISMKMLTMETKSQNA-----AGSSASIPAANNGTSIDS 114

Query: 940  QVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPSNMA 767
               NQG   P    +NQSQ  Q L+SQ +QN + S G+  S +LPS++  V+ +T +N  
Sbjct: 115  IPTNQGHLLPGSLPTNQSQAPQPLLSQTMQNNSAS-GMTGSTALPSSMPPVSSITNNNAT 173

Query: 766  NAIGQSSNLQNMSGISQ-NTGVQGVPSNIFTNTQRQMPGR 650
            + + Q++N+QN++G+ Q ++G  G+ SN+F+ +QRQM GR
Sbjct: 174  SVVNQNANMQNVAGMLQDSSGQHGLSSNMFSGSQRQMLGR 213