BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003854
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263065.1| PREDICTED: DNA-directed RNA polymerases I, I...   149   2e-34
dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp. vulgar...   148   4e-34
gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptid...   148   5e-34
ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group] g...   147   7e-34
ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group] g...   147   7e-34

>ref|XP_002263065.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC5 [Vitis vinifera] gi|297739069|emb|CBI28558.3|
           unnamed protein product [Vitis vinifera]
          Length = 71

 Score =  149 bits (377), Expect = 2e-34
 Identities = 70/71 (98%), Positives = 71/71 (100%)
 Frame = -2

Query: 221 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 42
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 41  NYNTLEKTETS 9
           NYNTLEK+ETS
Sbjct: 61  NYNTLEKSETS 71


>dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326520229|dbj|BAK04039.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 71

 Score =  148 bits (374), Expect = 4e-34
 Identities = 70/71 (98%), Positives = 70/71 (98%)
 Frame = -2

Query: 221 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 42
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 41  NYNTLEKTETS 9
           NYNTLEKTETS
Sbjct: 61  NYNTLEKTETS 71


>gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative [Musa
           balbisiana]
          Length = 70

 Score =  148 bits (373), Expect = 5e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = -2

Query: 221 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 42
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 41  NYNTLEKTET 12
           NYNTLEKTE+
Sbjct: 61  NYNTLEKTES 70


>ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group]
           gi|62733950|gb|AAX96059.1| dna-directed rna polymerase
           ii 8.2 kda polypeptide (ec 2.7.7.6)(rpb10) (rp10)
           (abc10) [Oryza sativa Japonica Group]
           gi|77549069|gb|ABA91866.1| DNA-directed RNA polymerase
           II 8.2 kDa polypeptide, putative, expressed [Oryza
           sativa Japonica Group] gi|113644643|dbj|BAF27784.1|
           Os11g0194800 [Oryza sativa Japonica Group]
           gi|215766304|dbj|BAG98532.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 74

 Score =  147 bits (372), Expect = 7e-34
 Identities = 69/71 (97%), Positives = 70/71 (98%)
 Frame = -2

Query: 221 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 42
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 41  NYNTLEKTETS 9
           NYNTLEKTET+
Sbjct: 61  NYNTLEKTETT 71


>ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group]
           gi|113648819|dbj|BAF29331.1| Os12g0180400 [Oryza sativa
           Japonica Group]
          Length = 72

 Score =  147 bits (372), Expect = 7e-34
 Identities = 69/71 (97%), Positives = 70/71 (98%)
 Frame = -2

Query: 221 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 42
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 41  NYNTLEKTETS 9
           NYNTLEKTET+
Sbjct: 61  NYNTLEKTETA 71