BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003840
         (1080 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267435.2| PREDICTED: zinc finger CCCH domain-containin...   474   e-131
emb|CBI36846.3| unnamed protein product [Vitis vinifera]              474   e-131
ref|XP_002523081.1| ATP-dependent RNA helicase, putative [Ricinu...   449   e-124
ref|XP_002882127.1| zinc finger helicase family protein [Arabido...   447   e-123
ref|NP_182290.1| zinc finger CCCH domain-containing protein 31 [...   444   e-122

>ref|XP_002267435.2| PREDICTED: zinc finger CCCH domain-containing protein 31 [Vitis
            vinifera]
          Length = 1014

 Score =  474 bits (1221), Expect = e-131
 Identities = 249/337 (73%), Positives = 277/337 (82%), Gaps = 1/337 (0%)
 Frame = -2

Query: 1010 LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 831
            LPVMA+R KIVEKI+ENRVTLI+GETGCGKSSQVPQFLL++ M PILCTQP         
Sbjct: 20   LPVMALRKKIVEKIMENRVTLIVGETGCGKSSQVPQFLLEENMAPILCTQPRRFAVVAVA 79

Query: 830  XXXXXXRGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAVILDE 651
                  R  EVGGEVGYHIGHSK+LSE S+I+FKTAGVLLDEMR+KG  AL+YK +ILDE
Sbjct: 80   RMVAKARNSEVGGEVGYHIGHSKLLSERSKIVFKTAGVLLDEMREKGSKALEYKVIILDE 139

Query: 650  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 471
            VHERSVESDLVL CVKQF+L+  DLRVVLMSATADI RYRDYFKDLGR ERVEVLAIP S
Sbjct: 140  VHERSVESDLVLVCVKQFMLRDYDLRVVLMSATADIARYRDYFKDLGRGERVEVLAIPNS 199

Query: 470  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGPSIE-AEIKPXXXXXXXXXXXXXX 294
            +Q+T FQR+V YLEQV ELLG++SE +S RY SG  PS++ A+IKP              
Sbjct: 200  SQKTFFQRKVSYLEQVTELLGINSE-LSTRYLSGPSPSMDNADIKPEVHKLIHDLVLKIH 258

Query: 293  ENEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 114
            +NE D+EKSILVFLPTY SLEQQW LLKP SS FK+HILHRSIDT+QALMAMKIWKSHRK
Sbjct: 259  KNELDIEKSILVFLPTYQSLEQQWYLLKPLSSCFKIHILHRSIDTEQALMAMKIWKSHRK 318

Query: 113  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKK 3
            VILATNIAESSVTIP VA+VIDSCRSLQV+WDS RKK
Sbjct: 319  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDSNRKK 355


>emb|CBI36846.3| unnamed protein product [Vitis vinifera]
          Length = 1007

 Score =  474 bits (1221), Expect = e-131
 Identities = 249/337 (73%), Positives = 277/337 (82%), Gaps = 1/337 (0%)
 Frame = -2

Query: 1010 LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 831
            LPVMA+R KIVEKI+ENRVTLI+GETGCGKSSQVPQFLL++ M PILCTQP         
Sbjct: 20   LPVMALRKKIVEKIMENRVTLIVGETGCGKSSQVPQFLLEENMAPILCTQPRRFAVVAVA 79

Query: 830  XXXXXXRGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAVILDE 651
                  R  EVGGEVGYHIGHSK+LSE S+I+FKTAGVLLDEMR+KG  AL+YK +ILDE
Sbjct: 80   RMVAKARNSEVGGEVGYHIGHSKLLSERSKIVFKTAGVLLDEMREKGSKALEYKVIILDE 139

Query: 650  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 471
            VHERSVESDLVL CVKQF+L+  DLRVVLMSATADI RYRDYFKDLGR ERVEVLAIP S
Sbjct: 140  VHERSVESDLVLVCVKQFMLRDYDLRVVLMSATADIARYRDYFKDLGRGERVEVLAIPNS 199

Query: 470  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGPSIE-AEIKPXXXXXXXXXXXXXX 294
            +Q+T FQR+V YLEQV ELLG++SE +S RY SG  PS++ A+IKP              
Sbjct: 200  SQKTFFQRKVSYLEQVTELLGINSE-LSTRYLSGPSPSMDNADIKPEVHKLIHDLVLKIH 258

Query: 293  ENEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 114
            +NE D+EKSILVFLPTY SLEQQW LLKP SS FK+HILHRSIDT+QALMAMKIWKSHRK
Sbjct: 259  KNELDIEKSILVFLPTYQSLEQQWYLLKPLSSCFKIHILHRSIDTEQALMAMKIWKSHRK 318

Query: 113  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKK 3
            VILATNIAESSVTIP VA+VIDSCRSLQV+WDS RKK
Sbjct: 319  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDSNRKK 355


>ref|XP_002523081.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223537643|gb|EEF39266.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 1025

 Score =  449 bits (1155), Expect = e-124
 Identities = 233/337 (69%), Positives = 268/337 (79%), Gaps = 1/337 (0%)
 Frame = -2

Query: 1010 LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 831
            LP+M++R KIVEK+LENRVTLI+G+TGCGKSSQVPQFLL++ MEPILCTQP         
Sbjct: 27   LPIMSLRQKIVEKVLENRVTLIVGDTGCGKSSQVPQFLLEENMEPILCTQPRRFAVVAVA 86

Query: 830  XXXXXXRGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAVILDE 651
                  R CE+GGEVGYHIGH K LSE S+I+FKTAGVL DEMR+KG++ALKYK +ILDE
Sbjct: 87   KMVAKARNCELGGEVGYHIGHLKHLSERSKIVFKTAGVLSDEMREKGLNALKYKVIILDE 146

Query: 650  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 471
            VHERS+ESDLVL CVKQFLL++ DLRVVLMSATAD  RYRDYFKDLGR ERVEVLAIP+S
Sbjct: 147  VHERSIESDLVLVCVKQFLLRNNDLRVVLMSATADFGRYRDYFKDLGRGERVEVLAIPSS 206

Query: 470  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGPS-IEAEIKPXXXXXXXXXXXXXX 294
             QQ +FQRRV YLEQ  E+    S+ ++ +Y SG  P+ + A+IKP              
Sbjct: 207  NQQALFQRRVSYLEQ--EI--TCSQVLATKYCSGPSPAMVSADIKPEVHKLIHDLVMHIH 262

Query: 293  ENEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 114
            +NEPD+EK ILVFLPTY+ L QQW LLKP  S FKVHILH SIDT+QAL+AMKIWKSHRK
Sbjct: 263  DNEPDIEKGILVFLPTYHDLLQQWYLLKPLGSCFKVHILHGSIDTEQALLAMKIWKSHRK 322

Query: 113  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKK 3
            VILATNIAESSVTIP VA+VIDSCRSLQV+WD  RKK
Sbjct: 323  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDGTRKK 359


>ref|XP_002882127.1| zinc finger helicase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297327966|gb|EFH58386.1| zinc finger helicase
            family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1015

 Score =  447 bits (1150), Expect = e-123
 Identities = 233/337 (69%), Positives = 270/337 (80%), Gaps = 1/337 (0%)
 Frame = -2

Query: 1010 LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 831
            LP+MAM+ +I++KILENRVTLI+GE GCGKSSQVPQFLL+  M PILCTQP         
Sbjct: 26   LPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAPILCTQPRRFAVVAVA 85

Query: 830  XXXXXXRGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAVILDE 651
                  R  ++GGE+GYHIGHSK+L+EGS+I+FKTAGVLLDEM DKG++AL+YK +ILDE
Sbjct: 86   KMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALQYKVIILDE 145

Query: 650  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 471
            VHERSVESDLVL CVKQFL+K+ DLRVVLMSATADITRYRDYFK+LGR ERVEV+AIP+ 
Sbjct: 146  VHERSVESDLVLVCVKQFLMKNNDLRVVLMSATADITRYRDYFKELGRGERVEVVAIPSP 205

Query: 470  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGP-SIEAEIKPXXXXXXXXXXXXXX 294
             Q+TIFQRRVLYLEQV  LLG+ S+     Y  G  P S +AEIKP              
Sbjct: 206  DQRTIFQRRVLYLEQVAGLLGMSSD--FSAYCPGPSPSSADAEIKPELQNLIHDLILYIH 263

Query: 293  ENEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 114
            E EPD+EKSILVFLPTYYSLEQQW  L+PF + F+VHILHRSIDT+QAL AMKI +S RK
Sbjct: 264  EKEPDIEKSILVFLPTYYSLEQQWHQLEPFRASFEVHILHRSIDTEQALAAMKICRSRRK 323

Query: 113  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKK 3
            VILATNIAESSVTIP VA+VIDSCRSLQV+WD+ RK+
Sbjct: 324  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDASRKR 360


>ref|NP_182290.1| zinc finger CCCH domain-containing protein 31 [Arabidopsis thaliana]
            gi|75317978|sp|O22243.2|C3H31_ARATH RecName: Full=Zinc
            finger CCCH domain-containing protein 31; Short=AtC3H31
            gi|3738282|gb|AAC63624.1| putative ATP-dependent RNA
            helicase A [Arabidopsis thaliana]
            gi|225898609|dbj|BAH30435.1| hypothetical protein
            [Arabidopsis thaliana] gi|330255781|gb|AEC10875.1| zinc
            finger CCCH domain-containing protein 31 [Arabidopsis
            thaliana]
          Length = 1015

 Score =  444 bits (1141), Expect = e-122
 Identities = 233/337 (69%), Positives = 268/337 (79%), Gaps = 1/337 (0%)
 Frame = -2

Query: 1010 LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 831
            LP+MAM+ +I++KILENRVTLI+GE GCGKSSQVPQFLL+  M PILCTQP         
Sbjct: 26   LPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAPILCTQPRRFAVVAVA 85

Query: 830  XXXXXXRGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAVILDE 651
                  R  ++GGE+GYHIGHSK+L+EGS+I+FKTAGVLLDEM DKG++ALKYK +ILDE
Sbjct: 86   KMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALKYKVIILDE 145

Query: 650  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 471
            VHERSVESDLVL CVKQFL+K+ DLRVVLMSATADITRYRDYFK+LGR ERVEV+AIP+ 
Sbjct: 146  VHERSVESDLVLVCVKQFLMKNNDLRVVLMSATADITRYRDYFKELGRGERVEVVAIPSP 205

Query: 470  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGP-SIEAEIKPXXXXXXXXXXXXXX 294
             Q+TIFQRRVLYLEQV  LLGV S+     Y  G  P S + EIKP              
Sbjct: 206  DQRTIFQRRVLYLEQVAGLLGVSSD--LSAYCPGPSPSSADTEIKPELQNLIHDLILYIH 263

Query: 293  ENEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 114
            E EPD+EKSILVFLPTYYSLEQQ+  L+PF + F+VHILHRSIDT+QAL AMKI +S RK
Sbjct: 264  EKEPDIEKSILVFLPTYYSLEQQYHQLEPFFASFEVHILHRSIDTEQALAAMKICRSRRK 323

Query: 113  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKK 3
            VILATNIAESSVTIP VA+VIDSCRSLQV+WD  RK+
Sbjct: 324  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKR 360