BLASTX nr result
ID: Coptis23_contig00003796
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00003796
(2164 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272685.1| PREDICTED: pre-mRNA-processing factor 39-lik... 303 0.0
ref|XP_003553509.1| PREDICTED: pre-mRNA-processing factor 39-lik... 276 e-178
ref|XP_003521310.1| PREDICTED: pre-mRNA-processing factor 39-lik... 273 e-176
emb|CAN60862.1| hypothetical protein VITISV_027789 [Vitis vinifera] 300 e-173
ref|XP_003625373.1| Pre-mRNA-processing factor [Medicago truncat... 278 e-173
>ref|XP_002272685.1| PREDICTED: pre-mRNA-processing factor 39-like [Vitis vinifera]
Length = 832
Score = 303 bits (775), Expect(3) = 0.0
Identities = 151/182 (82%), Positives = 163/182 (89%)
Frame = -2
Query: 1569 DFNKVVKLYERCLIACANYSEFWIRYVLCMEASGSMDSANDALARATQTFVKRQPEIHLF 1390
DFNKVVKLYERCLIACANY E+WIRYVLCMEASGSMD AN+ALARATQ FVKRQPEIHLF
Sbjct: 439 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALARATQVFVKRQPEIHLF 498
Query: 1389 AAKFREQTGNIVGAREAYQHVHSGISPGLLEAIIKHANMEHRLGNMEDAFSLYDQAIATE 1210
AA+FREQ G+I G+R AYQ VH+ ISPGLLEAIIKHANMEHRLGN+EDAFSLY+QAIA E
Sbjct: 499 AARFREQKGDIPGSRAAYQLVHTEISPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIE 558
Query: 1209 KGKEQSQTLPMLFVQYARFQYLVAGNLEKAREILDGALEHVELSKPFLEALIHLESVHLV 1030
KGKE SQTLPMLF QY+RF YLV GN EKAREIL ALEHV+LSKP LEALIHLES+ +
Sbjct: 559 KGKEHSQTLPMLFAQYSRFLYLVTGNTEKAREILVEALEHVQLSKPLLEALIHLESIQSL 618
Query: 1029 PK 1024
PK
Sbjct: 619 PK 620
Score = 235 bits (600), Expect(3) = 0.0
Identities = 121/172 (70%), Positives = 128/172 (74%), Gaps = 1/172 (0%)
Frame = -3
Query: 2162 RLFERGLAFVGTDYLSYPLWDKYIEYEYSHQEWSQLATIYTRILENPNQQLDRYFGSFKE 1983
RLFERGLA+VGTDYLSYPLWDK+IEYEYS QEWS+LA IYTRILENPNQQLDRY SFKE
Sbjct: 265 RLFERGLAYVGTDYLSYPLWDKFIEYEYSQQEWSRLAMIYTRILENPNQQLDRYLNSFKE 324
Query: 1982 LAGSRPLSELRXXXXXXXXXXXXXXXXSQGTEGEVCHDGAEHSHS-XXXXXXXXXXXEKY 1806
LAGSRPLSEL QG EGE D E S EKY
Sbjct: 325 LAGSRPLSELTTAEEAAATAGAFSDANGQGIEGEARPDEVEQSSKPVSAGLTDAEELEKY 384
Query: 1805 VAIREEMYKKSKEFDSKIIGFETAIRRPYFHVRPLNGSELENWHNYLDFIER 1650
+AIREEMYKK+K+FDSKIIGFETAIRRPYFHVRPLN +ELENWHNYLDFIER
Sbjct: 385 IAIREEMYKKAKDFDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFIER 436
Score = 167 bits (424), Expect(3) = 0.0
Identities = 87/131 (66%), Positives = 100/131 (76%), Gaps = 5/131 (3%)
Frame = -1
Query: 922 DREDLSSIYLEFLDLFGDVQTNKKASDRHAKLFLXXXXXXXXXXXSAEDFLASDKTKVAK 743
+RE+LSSI+LEFLDLFGD Q+ KKA DRHAKLFL AEDFLASDK K+AK
Sbjct: 647 EREELSSIFLEFLDLFGDAQSIKKADDRHAKLFLHHRSTSELKKRHAEDFLASDKAKLAK 706
Query: 742 SYAGVPSAAQAAMGAYPNAQNQW-SAYGVQPQAWMPSPQAQGQQY-PGYTQQA---AYGG 578
SY+GVPS AQ+ MGAYP+AQNQW S YG+QPQAW + QAQGQQ+ PGYTQQA AY G
Sbjct: 707 SYSGVPSPAQSLMGAYPSAQNQWASGYGLQPQAWPQATQAQGQQWNPGYTQQAAYNAYSG 766
Query: 577 YNSTYVAPQVP 545
Y S+Y PQ+P
Sbjct: 767 YGSSYTHPQIP 777
>ref|XP_003553509.1| PREDICTED: pre-mRNA-processing factor 39-like [Glycine max]
Length = 828
Score = 276 bits (706), Expect(3) = e-178
Identities = 136/182 (74%), Positives = 155/182 (85%)
Frame = -2
Query: 1569 DFNKVVKLYERCLIACANYSEFWIRYVLCMEASGSMDSANDALARATQTFVKRQPEIHLF 1390
D +K+VKLYERC+IACANY E+WIRYVLCMEASGSMD AN+ LARATQ FVKRQPEIHLF
Sbjct: 438 DLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARATQVFVKRQPEIHLF 497
Query: 1389 AAKFREQTGNIVGAREAYQHVHSGISPGLLEAIIKHANMEHRLGNMEDAFSLYDQAIATE 1210
A+F+EQTG+I GAR AYQ VH+ SPGLLEAIIKHANME+RLG MEDAFSLY+ AIA E
Sbjct: 498 CARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEYRLGKMEDAFSLYEHAIAIE 557
Query: 1209 KGKEQSQTLPMLFVQYARFQYLVAGNLEKAREILDGALEHVELSKPFLEALIHLESVHLV 1030
KGKE SQTLPMLF QY+RF YL +GN EKAR+IL LE+V LSKP LEAL+H E++ +
Sbjct: 558 KGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEALLHFEAIQPL 617
Query: 1029 PK 1024
PK
Sbjct: 618 PK 619
Score = 242 bits (617), Expect(3) = e-178
Identities = 124/172 (72%), Positives = 131/172 (76%), Gaps = 1/172 (0%)
Frame = -3
Query: 2162 RLFERGLAFVGTDYLSYPLWDKYIEYEYSHQEWSQLATIYTRILENPNQQLDRYFGSFKE 1983
RLFERGLA+VGTDYLS+PLWDKYIEYEY Q+W+ LA IYTRILENPNQQLDRYF SFKE
Sbjct: 264 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWACLAVIYTRILENPNQQLDRYFSSFKE 323
Query: 1982 LAGSRPLSELRXXXXXXXXXXXXXXXXSQGTEGEVCHDGAEHS-HSXXXXXXXXXXXEKY 1806
LAG+RPLSELR Q TEGEV DGAE S S EKY
Sbjct: 324 LAGNRPLSELRTADEAAAVAGVASEATGQATEGEVHPDGAERSPKSVSAGLTEAEELEKY 383
Query: 1805 VAIREEMYKKSKEFDSKIIGFETAIRRPYFHVRPLNGSELENWHNYLDFIER 1650
+AIREEMYKK+KEFDSKIIGFETAIRRPYFHVRPLN ELENWHNYLDFIER
Sbjct: 384 IAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIER 435
Score = 156 bits (395), Expect(3) = e-178
Identities = 83/130 (63%), Positives = 96/130 (73%), Gaps = 4/130 (3%)
Frame = -1
Query: 922 DREDLSSIYLEFLDLFGDVQTNKKASDRHAKLFLXXXXXXXXXXXSAEDFLASDKTKVAK 743
+RE+LSSI+LEFL+LFGDVQ+ K+A DRHAKLFL AEDFL SDKTKV +
Sbjct: 648 EREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLVSDKTKVPR 707
Query: 742 SYAGVPSAAQAAMGAYPNAQNQWSAYGVQPQAWMPSPQAQGQQY-PGYTQQAAYG---GY 575
SY+ S AQ+AMGAYPNAQNQW+ YGVQPQ W P QAQGQQ+ GYTQQA+YG GY
Sbjct: 708 SYS-AQSPAQSAMGAYPNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGY 766
Query: 574 NSTYVAPQVP 545
S YV Q+P
Sbjct: 767 GSNYVNSQLP 776
>ref|XP_003521310.1| PREDICTED: pre-mRNA-processing factor 39-like [Glycine max]
Length = 828
Score = 273 bits (699), Expect(3) = e-176
Identities = 134/182 (73%), Positives = 155/182 (85%)
Frame = -2
Query: 1569 DFNKVVKLYERCLIACANYSEFWIRYVLCMEASGSMDSANDALARATQTFVKRQPEIHLF 1390
D +K+VKLYERC+IACANY E+WIRYVLCMEASGSMD AN+ LARATQ FVKRQPEIH+F
Sbjct: 439 DLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARATQVFVKRQPEIHIF 498
Query: 1389 AAKFREQTGNIVGAREAYQHVHSGISPGLLEAIIKHANMEHRLGNMEDAFSLYDQAIATE 1210
A+F+EQTG+I GAR AYQ VH+ SPGLLEAIIKHANME+RL MEDAFSLY+QAIA E
Sbjct: 499 CARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEYRLEKMEDAFSLYEQAIAIE 558
Query: 1209 KGKEQSQTLPMLFVQYARFQYLVAGNLEKAREILDGALEHVELSKPFLEALIHLESVHLV 1030
KGKE SQTLPMLF QY+RF YL +GN EKAR+IL LE+V LSKP LEA++H E++ +
Sbjct: 559 KGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEAILHFEAIQPL 618
Query: 1029 PK 1024
PK
Sbjct: 619 PK 620
Score = 243 bits (621), Expect(3) = e-176
Identities = 124/172 (72%), Positives = 132/172 (76%), Gaps = 1/172 (0%)
Frame = -3
Query: 2162 RLFERGLAFVGTDYLSYPLWDKYIEYEYSHQEWSQLATIYTRILENPNQQLDRYFGSFKE 1983
RLFERGLA+VGTDYLS+PLWDKYIEYEY Q+W++LA IYTRILENPNQQLDRYF SFKE
Sbjct: 265 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAVIYTRILENPNQQLDRYFSSFKE 324
Query: 1982 LAGSRPLSELRXXXXXXXXXXXXXXXXSQGTEGEVCHDGAEHS-HSXXXXXXXXXXXEKY 1806
LAG+RPLSELR Q TEGEV DGAE S S EKY
Sbjct: 325 LAGNRPLSELRTADEAAAVAGVASEATGQATEGEVHPDGAERSPKSVSAGLTEAEELEKY 384
Query: 1805 VAIREEMYKKSKEFDSKIIGFETAIRRPYFHVRPLNGSELENWHNYLDFIER 1650
+AIREEMYKK+KEFDSKIIGFETAIRRPYFHVRPLN ELENWHNYLDFIER
Sbjct: 385 IAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIER 436
Score = 153 bits (386), Expect(3) = e-176
Identities = 81/130 (62%), Positives = 93/130 (71%), Gaps = 4/130 (3%)
Frame = -1
Query: 922 DREDLSSIYLEFLDLFGDVQTNKKASDRHAKLFLXXXXXXXXXXXSAEDFLASDKTKVAK 743
+RE+LSSI+LEFL+LFGDVQ+ K+A DRHAKLFL AEDFLASDKTK +
Sbjct: 649 EREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKAPR 708
Query: 742 SYAGVPSAAQAAMGAYPNAQNQWSAYGVQPQAWMPSPQAQGQQY-PGYTQQAAYG---GY 575
SY+ S AQ+ MGAYPNAQNQWS YGVQPQ W P QAQGQQ+ GYTQQA+YG GY
Sbjct: 709 SYS-AQSPAQSGMGAYPNAQNQWSNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGY 767
Query: 574 NSTYVAPQVP 545
Y Q+P
Sbjct: 768 GGNYANSQLP 777
>emb|CAN60862.1| hypothetical protein VITISV_027789 [Vitis vinifera]
Length = 826
Score = 300 bits (768), Expect(3) = e-173
Identities = 150/182 (82%), Positives = 162/182 (89%)
Frame = -2
Query: 1569 DFNKVVKLYERCLIACANYSEFWIRYVLCMEASGSMDSANDALARATQTFVKRQPEIHLF 1390
DFNKVVKLYERCLIACANY E+WIRYVLCMEASGSMD AN+ALARATQ FVKRQPEIHLF
Sbjct: 460 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALARATQVFVKRQPEIHLF 519
Query: 1389 AAKFREQTGNIVGAREAYQHVHSGISPGLLEAIIKHANMEHRLGNMEDAFSLYDQAIATE 1210
AA+FREQ G+I G+R AYQ VH+ ISPGLLEAIIKHANMEHRLGN+E AFSLY+QAIA E
Sbjct: 520 AARFREQKGDIPGSRAAYQLVHTEISPGLLEAIIKHANMEHRLGNLEXAFSLYEQAIAIE 579
Query: 1209 KGKEQSQTLPMLFVQYARFQYLVAGNLEKAREILDGALEHVELSKPFLEALIHLESVHLV 1030
KGKE SQTLPMLF QY+RF YLV GN EKAREIL ALEHV+LSKP LEALIHLES+ +
Sbjct: 580 KGKEHSQTLPMLFAQYSRFLYLVTGNTEKAREILVEALEHVQLSKPLLEALIHLESIQSL 639
Query: 1029 PK 1024
PK
Sbjct: 640 PK 641
Score = 235 bits (600), Expect(3) = e-173
Identities = 121/172 (70%), Positives = 128/172 (74%), Gaps = 1/172 (0%)
Frame = -3
Query: 2162 RLFERGLAFVGTDYLSYPLWDKYIEYEYSHQEWSQLATIYTRILENPNQQLDRYFGSFKE 1983
RLFERGLA+VGTDYLSYPLWDK+IEYEYS QEWS+LA IYTRILENPNQQLDRY SFKE
Sbjct: 286 RLFERGLAYVGTDYLSYPLWDKFIEYEYSQQEWSRLAMIYTRILENPNQQLDRYLNSFKE 345
Query: 1982 LAGSRPLSELRXXXXXXXXXXXXXXXXSQGTEGEVCHDGAEHSHS-XXXXXXXXXXXEKY 1806
LAGSRPLSEL QG EGE D E S EKY
Sbjct: 346 LAGSRPLSELTTAEEAAATAGAFSDANGQGIEGEARPDEVEQSSKPVSAGLTDAEELEKY 405
Query: 1805 VAIREEMYKKSKEFDSKIIGFETAIRRPYFHVRPLNGSELENWHNYLDFIER 1650
+AIREEMYKK+K+FDSKIIGFETAIRRPYFHVRPLN +ELENWHNYLDFIER
Sbjct: 406 IAIREEMYKKAKDFDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFIER 457
Score = 123 bits (309), Expect(3) = e-173
Identities = 70/131 (53%), Positives = 85/131 (64%), Gaps = 5/131 (3%)
Frame = -1
Query: 922 DREDLSSIYLEFLDLFGDVQTNKKASDRHAKLFLXXXXXXXXXXXSAEDFLASDKTKVAK 743
+RE+LSSI+LE++ + RHA EDFLASDK K+AK
Sbjct: 668 EREELSSIFLEYI----------RVEKRHA-----------------EDFLASDKAKLAK 700
Query: 742 SYAGVPSAAQAAMGAYPNAQNQW-SAYGVQPQAWMPSPQAQGQQY-PGYTQQA---AYGG 578
SY+GVPS AQ+ MGAYP+AQNQW S YG+QPQAW + QAQGQQ+ PGYTQQA AY G
Sbjct: 701 SYSGVPSPAQSLMGAYPSAQNQWASGYGLQPQAWPQATQAQGQQWNPGYTQQAAYNAYSG 760
Query: 577 YNSTYVAPQVP 545
Y S+Y PQ+P
Sbjct: 761 YGSSYTHPQIP 771
>ref|XP_003625373.1| Pre-mRNA-processing factor [Medicago truncatula]
gi|355500388|gb|AES81591.1| Pre-mRNA-processing factor
[Medicago truncatula]
Length = 838
Score = 278 bits (712), Expect(3) = e-173
Identities = 136/182 (74%), Positives = 155/182 (85%)
Frame = -2
Query: 1569 DFNKVVKLYERCLIACANYSEFWIRYVLCMEASGSMDSANDALARATQTFVKRQPEIHLF 1390
D +K+VKLYERC+IACANY E+WIRYVLCMEAS SMD AN+ LARA+Q FVKRQPEIHLF
Sbjct: 447 DLSKIVKLYERCVIACANYPEYWIRYVLCMEASESMDLANNVLARASQVFVKRQPEIHLF 506
Query: 1389 AAKFREQTGNIVGAREAYQHVHSGISPGLLEAIIKHANMEHRLGNMEDAFSLYDQAIATE 1210
A+F+EQ G+IVGAR AYQ VH+ ISPGLLEAII+HANMEHRLG +EDAFSLY+QAIA E
Sbjct: 507 CARFKEQAGDIVGARAAYQLVHTEISPGLLEAIIRHANMEHRLGKLEDAFSLYEQAIAIE 566
Query: 1209 KGKEQSQTLPMLFVQYARFQYLVAGNLEKAREILDGALEHVELSKPFLEALIHLESVHLV 1030
KGKE SQTLPMLF QY+RF YL +GN EKAREIL G LE+ LSKP LEAL+H E++
Sbjct: 567 KGKEHSQTLPMLFAQYSRFVYLASGNSEKAREILVGGLENASLSKPLLEALLHFEAIQPQ 626
Query: 1029 PK 1024
PK
Sbjct: 627 PK 628
Score = 234 bits (598), Expect(3) = e-173
Identities = 119/171 (69%), Positives = 129/171 (75%), Gaps = 1/171 (0%)
Frame = -3
Query: 2159 LFERGLAFVGTDYLSYPLWDKYIEYEYSHQEWSQLATIYTRILENPNQQLDRYFGSFKEL 1980
LFERGLA+VGTDYLS+PLWDKYIEYEY Q+W++LA IYTRILENPNQQLDRYF SFKEL
Sbjct: 274 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFNSFKEL 333
Query: 1979 AGSRPLSELRXXXXXXXXXXXXXXXXSQGTEGEVCHDGAEHS-HSXXXXXXXXXXXEKYV 1803
A +RPLSELR QG EGEV DGA++S EKY+
Sbjct: 334 ASNRPLSELRTADEAAAVAGVVSEGIDQGVEGEVHPDGADNSPKPASAGLTEAEELEKYI 393
Query: 1802 AIREEMYKKSKEFDSKIIGFETAIRRPYFHVRPLNGSELENWHNYLDFIER 1650
AIREEMYKK+KEFDSKIIGFET IRRPYFHVRPLN ELENWHNYLDFIER
Sbjct: 394 AIREEMYKKAKEFDSKIIGFETTIRRPYFHVRPLNIGELENWHNYLDFIER 444
Score = 145 bits (366), Expect(3) = e-173
Identities = 76/133 (57%), Positives = 91/133 (68%), Gaps = 7/133 (5%)
Frame = -1
Query: 922 DREDLSSIYLEFLDLFGDVQTNKKASDRHAKLFLXXXXXXXXXXXSAEDFLASDKTKVAK 743
+RE+LS+I+LEFL+LFGDVQ+ K+A DRHAKLFL AEDFLASDKTKV++
Sbjct: 657 EREELSNIFLEFLNLFGDVQSIKRAEDRHAKLFLPNRGLSELKKRHAEDFLASDKTKVSR 716
Query: 742 SYAGVPSAAQAAMGAYPNAQNQWSAYGVQPQAWMPSPQAQGQQYP-GYTQQ------AAY 584
+Y+ S AQ+ GAYPN NQW YGVQPQ W + QAQGQQ+P GYTQQ AY
Sbjct: 717 AYS-AQSPAQSVAGAYPNGPNQWPNYGVQPQTWPATTQAQGQQWPAGYTQQQAAASYGAY 775
Query: 583 GGYNSTYVAPQVP 545
GY Y PQ+P
Sbjct: 776 AGYGGNYANPQLP 788