BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003644
         (1860 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265433.2| PREDICTED: uncharacterized protein LOC100262...   323   1e-85
ref|XP_002530078.1| conserved hypothetical protein [Ricinus comm...   307   5e-81
emb|CBI37628.3| unnamed protein product [Vitis vinifera]              307   7e-81
ref|XP_002279496.2| PREDICTED: uncharacterized protein LOC100260...   303   1e-79
ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymera...   300   1e-78

>ref|XP_002265433.2| PREDICTED: uncharacterized protein LOC100262291 [Vitis vinifera]
            gi|296081186|emb|CBI18212.3| unnamed protein product
            [Vitis vinifera]
          Length = 332

 Score =  323 bits (827), Expect = 1e-85
 Identities = 161/241 (66%), Positives = 197/241 (81%)
 Frame = +2

Query: 551  TIDDEQIKILDIKDQLEDPQQSEDTLVNLLQELEDMDITFKALKETDIGRHVNLLRKHRS 730
            +ID+EQ KIL IK++LEDP Q ED+LV+LLQ L DMDITFKALKETDIGRHVN LRKH S
Sbjct: 98   SIDEEQSKILAIKERLEDPDQLEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHPS 157

Query: 731  SEVRQMVKQVVRKWKYLVDAWVKGSSPGETAPSAFIVDGDSPQQNPPRSNQNGHHQVPDF 910
            +EVR++VKQ+VRKWK LVD WVK S+PGET  SA + DGDSPQQN  +S  N HHQVPDF
Sbjct: 158  NEVRRLVKQLVRKWKDLVDEWVKLSTPGETTASAIVADGDSPQQNHLKSTSNVHHQVPDF 217

Query: 911  GYSPSPNTHNGSSGSDRNNSEPEPRKKVIPRREPVPQTRPSQSARVSNSPSIPNKLKEPK 1090
             YSP+P  HNGSSGSD+NN E EP++K +PRRE     +P+Q+  +  S ++ NK +E K
Sbjct: 218  AYSPNP--HNGSSGSDKNNVELEPKRKAVPRRE--TPNKPNQTPPIPTSVAL-NKQREQK 272

Query: 1091 NNAIDPERFASARKRLHDNYQEAQNAKKQRTIQVMDLHDIPKPKNSFFSKNKGGGSQARH 1270
            ++ +D E+ ASAR+RLH+NYQEAQNAKKQRTIQVMD+HDIPKPKN+FF+KN+ GG QA+H
Sbjct: 273  DSLVDEEKLASARRRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKNR-GGVQAKH 331

Query: 1271 W 1273
            W
Sbjct: 332  W 332



 Score = 57.8 bits (138), Expect = 1e-05
 Identities = 27/40 (67%), Positives = 31/40 (77%)
 Frame = +3

Query: 3   MDLDDVRSILRSSGVDIWCLIDTAISVASKDYENEMKERR 122
           MD D+ RSIL SSGVD+W LI+TA+SVAS DY  E K RR
Sbjct: 1   MDCDEFRSILESSGVDVWTLIETAVSVASVDYSEEFKGRR 40


>ref|XP_002530078.1| conserved hypothetical protein [Ricinus communis]
            gi|223530431|gb|EEF32318.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 362

 Score =  307 bits (787), Expect = 5e-81
 Identities = 160/244 (65%), Positives = 191/244 (78%), Gaps = 5/244 (2%)
 Frame = +2

Query: 557  DDEQIKILDIKDQLEDPQQSEDTLVNLLQELEDMDITFKALKETDIGRHVNLLRKHRSSE 736
            DDEQ KIL+IK  LEDP QSED+LV+LLQ L DMDITFKALKETDIGRHVN LRKH S++
Sbjct: 126  DDEQKKILEIKQHLEDPDQSEDSLVDLLQSLADMDITFKALKETDIGRHVNQLRKHTSND 185

Query: 737  VRQMVKQVVRKWKYLVDAWVKGSSPGETAPSAFIVDGDSPQQNPPRSNQNGHHQVPDFGY 916
            VR++VKQ+VRKWK +VD WVK + PG+ A S  + DGDSP+Q  P   QNGHHQVPDF Y
Sbjct: 186  VRRLVKQLVRKWKDIVDEWVKLNPPGQHASSGLMADGDSPRQKFP---QNGHHQVPDFAY 242

Query: 917  SPSPNTHNGSSGSDRNNSEPEPRKKVIPRREPVPQTRPS-QSARVSNSPS--IPNKLKEP 1087
            SP+P  HNGSSGSD+NNSEPE R K +PR+E  P  RP+ QS  VS S S  +  + ++ 
Sbjct: 243  SPNP--HNGSSGSDKNNSEPERRPKPVPRKEAPP--RPAQQSVPVSASASHIVQRQREQQ 298

Query: 1088 KNNAIDPERFASARKRLHDNYQEAQNAKKQRTIQVMDLHDIPKP--KNSFFSKNKGGGSQ 1261
            + N  D +R ASARKRL  NY+EA+NAKKQRTIQVMD+H++PKP  KN+FF+KNKGGGSQ
Sbjct: 299  RENNFDSDRLASARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNKNTFFAKNKGGGSQ 358

Query: 1262 ARHW 1273
             RHW
Sbjct: 359  GRHW 362



 Score = 60.5 bits (145), Expect = 2e-06
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = +3

Query: 3   MDLDDVRSILRSSGVDIWCLIDTAISVASKDYENEMKERR 122
           MD+DD RSIL SSGVD+W  IDTAI VAS D+ NE+K+RR
Sbjct: 1   MDVDDFRSILESSGVDVWTFIDTAIVVASLDFGNELKQRR 40


>emb|CBI37628.3| unnamed protein product [Vitis vinifera]
          Length = 332

 Score =  307 bits (786), Expect = 7e-81
 Identities = 160/239 (66%), Positives = 193/239 (80%)
 Frame = +2

Query: 554  IDDEQIKILDIKDQLEDPQQSEDTLVNLLQELEDMDITFKALKETDIGRHVNLLRKHRSS 733
            +D+E+ +ILDIK+ LE P Q +D++V+LLQ L DMDITFKALKETDIGRHVN LRKH S+
Sbjct: 104  LDEEEARILDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSN 163

Query: 734  EVRQMVKQVVRKWKYLVDAWVKGSSPGETAPSAFIVDGDSPQQNPPRSNQNGHHQVPDFG 913
            +VR++VK +VRKWK LVD WVK +  GE   SA + +GDSP Q  PR+   GHHQVPDFG
Sbjct: 164  DVRRLVKHLVRKWKDLVDEWVKSNPAGEFTSSALMAEGDSPPQKIPRT---GHHQVPDFG 220

Query: 914  YSPSPNTHNGSSGSDRNNSEPEPRKKVIPRREPVPQTRPSQSARVSNSPSIPNKLKEPKN 1093
            YSP+P   NGSSGSD+NN+EPEP+ K IPR+E VP TRP+QSA VS+S   PNK    ++
Sbjct: 221  YSPNP--QNGSSGSDKNNAEPEPKVKAIPRKE-VP-TRPAQSAPVSSSFPPPNK---QRD 273

Query: 1094 NAIDPERFASARKRLHDNYQEAQNAKKQRTIQVMDLHDIPKPKNSFFSKNKGGGSQARH 1270
             AIDP++FASARKRLH+NYQEAQNAKKQRTIQVMD+HDIPKPKN+FF+K K  GSQ RH
Sbjct: 274  TAIDPDKFASARKRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKPK-VGSQGRH 331


>ref|XP_002279496.2| PREDICTED: uncharacterized protein LOC100260896 isoform 1 [Vitis
            vinifera]
          Length = 331

 Score =  303 bits (776), Expect = 1e-79
 Identities = 160/239 (66%), Positives = 194/239 (81%)
 Frame = +2

Query: 554  IDDEQIKILDIKDQLEDPQQSEDTLVNLLQELEDMDITFKALKETDIGRHVNLLRKHRSS 733
            +D+E+ +ILDIK+ LE P Q +D++V+LLQ L DMDITFKALKETDIGRHVN LRKH S+
Sbjct: 104  LDEEEARILDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSN 163

Query: 734  EVRQMVKQVVRKWKYLVDAWVKGSSPGETAPSAFIVDGDSPQQNPPRSNQNGHHQVPDFG 913
            +VR++VK +VRKWK LVD WVK +  GE   SA +++GDSP Q  PR+   GHHQVPDFG
Sbjct: 164  DVRRLVKHLVRKWKDLVDEWVKSNPAGEFTSSA-LMEGDSPPQKIPRT---GHHQVPDFG 219

Query: 914  YSPSPNTHNGSSGSDRNNSEPEPRKKVIPRREPVPQTRPSQSARVSNSPSIPNKLKEPKN 1093
            YSP+P   NGSSGSD+NN+EPEP+ K IPR+E VP TRP+QSA VS+S   PNK    ++
Sbjct: 220  YSPNP--QNGSSGSDKNNAEPEPKVKAIPRKE-VP-TRPAQSAPVSSSFPPPNK---QRD 272

Query: 1094 NAIDPERFASARKRLHDNYQEAQNAKKQRTIQVMDLHDIPKPKNSFFSKNKGGGSQARH 1270
             AIDP++FASARKRLH+NYQEAQNAKKQRTIQVMD+HDIPKPKN+FF+K K  GSQ RH
Sbjct: 273  TAIDPDKFASARKRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKPK-VGSQGRH 330


>ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymerase II transcription
            subunit 26c-like [Cucumis sativus]
            gi|449528150|ref|XP_004171069.1| PREDICTED: probable
            mediator of RNA polymerase II transcription subunit
            26c-like [Cucumis sativus]
          Length = 345

 Score =  300 bits (767), Expect = 1e-78
 Identities = 151/241 (62%), Positives = 186/241 (77%), Gaps = 2/241 (0%)
 Frame = +2

Query: 557  DDEQIKILDIKDQLEDPQQSEDTLVNLLQELEDMDITFKALKETDIGRHVNLLRKHRSSE 736
            DDEQ K+L+IK+QLE PQQ ED LV LLQ L DMDITF+ALKETDIGRHVN LRKH S++
Sbjct: 113  DDEQKKVLEIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSND 172

Query: 737  VRQMVKQVVRKWKYLVDAWVKGSSPGETAPSAFIVDGDSPQQNPPRSNQNGHHQVPDFGY 916
            VR++VK +VRKWK +VD WV+ + PGE   +  + DGDSPQQ  P   QNG+HQVPDF Y
Sbjct: 173  VRRLVKHLVRKWKEIVDEWVRLNQPGEQT-ATLLADGDSPQQKAP---QNGYHQVPDFAY 228

Query: 917  SPSPNTHNGSSGSDRNNSEPEPRKKVIPRREPVPQTRPSQSARVSNSPSIPNKLKEPKNN 1096
            SP+P  HNG SGSDRNNSEPEP+ K +PRR+ +P  +P+Q A  S+      + ++ K  
Sbjct: 229  SPNP--HNGGSGSDRNNSEPEPKGKSVPRRDALP--KPTQQAPTSSLTPQNRQKEQQKEA 284

Query: 1097 AIDPERFASARKRLHDNYQEAQNAKKQRTIQVMDLHDIPKPKNSFFSKNK--GGGSQARH 1270
              D ++ ASARKRL +NY+EA+NAK+QRTIQVMD+H+IPKPKN+FFSKNK  GGGSQ RH
Sbjct: 285  NFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRH 344

Query: 1271 W 1273
            W
Sbjct: 345  W 345