BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003589
         (769 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002875045.1| ATRPS13A [Arabidopsis lyrata subsp. lyrata] ...   279   5e-73
ref|NP_567151.1| 40S ribosomal protein S13-2 [Arabidopsis thalia...   276   3e-72
ref|NP_567104.1| 40S ribosomal protein S13-1 [Arabidopsis thalia...   275   1e-71
ref|XP_002280012.1| PREDICTED: 40S ribosomal protein S13 [Vitis ...   275   1e-71
ref|XP_002878348.1| 40S ribosomal protein S13 [Arabidopsis lyrat...   273   2e-71

>ref|XP_002875045.1| ATRPS13A [Arabidopsis lyrata subsp. lyrata]
           gi|297320882|gb|EFH51304.1| ATRPS13A [Arabidopsis lyrata
           subsp. lyrata]
          Length = 151

 Score =  279 bits (713), Expect = 5e-73
 Identities = 137/148 (92%), Positives = 142/148 (95%)
 Frame = +3

Query: 69  MGRMHSRGKGISSSALPYKRTPPSWLKTSSQDVDESICKFSKKGLTPSQIGVFLRDSHGI 248
           MGRMHSRGKGIS+SALPYKR PPSWLKT+SQDVDESICKF+KKGLTPSQIGV LRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRPPPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 249 PQLKVVTGSKVLRILKAHGLAPEIPEDLYQLIKKAVAIRKHLERNRKDKDSKFRLILVES 428
           PQ+K VTGSK+LRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 429 RIHRLARYYKTIKKLPPVWKYESTTAST 512
           RIHRLARYYK  KKLPPVWKYESTTAST
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTAST 148


>ref|NP_567151.1| 40S ribosomal protein S13-2 [Arabidopsis thaliana]
           gi|27808638|sp|P59224.1|RS132_ARATH RecName: Full=40S
           ribosomal protein S13-2
           gi|13877541|gb|AAK43848.1|AF370471_1 similar to
           ribosomal protein S13 [Arabidopsis thaliana]
           gi|6521012|dbj|BAA88058.1| cytoplasmic ribosomal protein
           S13 [Arabidopsis thaliana] gi|15982874|gb|AAL09784.1|
           AT4g00100/F6N15_7 [Arabidopsis thaliana]
           gi|21593617|gb|AAM65584.1| putative ribosomal protein
           S13 [Arabidopsis thaliana] gi|30102866|gb|AAP21351.1|
           At4g00100 [Arabidopsis thaliana]
           gi|332656423|gb|AEE81823.1| 40S ribosomal protein S13-2
           [Arabidopsis thaliana]
          Length = 151

 Score =  276 bits (707), Expect = 3e-72
 Identities = 136/148 (91%), Positives = 142/148 (95%)
 Frame = +3

Query: 69  MGRMHSRGKGISSSALPYKRTPPSWLKTSSQDVDESICKFSKKGLTPSQIGVFLRDSHGI 248
           MGRMHSRGKGIS+SALPYKR+ PSWLKT+SQDVDESICKF+KKGLTPSQIGV LRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 249 PQLKVVTGSKVLRILKAHGLAPEIPEDLYQLIKKAVAIRKHLERNRKDKDSKFRLILVES 428
           PQ+K VTGSK+LRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 429 RIHRLARYYKTIKKLPPVWKYESTTAST 512
           RIHRLARYYK  KKLPPVWKYESTTAST
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTAST 148


>ref|NP_567104.1| 40S ribosomal protein S13-1 [Arabidopsis thaliana]
           gi|27808637|sp|P59223.1|RS131_ARATH RecName: Full=40S
           ribosomal protein S13-1
           gi|14190473|gb|AAK55717.1|AF380636_1 AT3g60770/T4C21_180
           [Arabidopsis thaliana] gi|15810101|gb|AAL06976.1|
           AT3g60770/T4C21_180 [Arabidopsis thaliana]
           gi|19699318|gb|AAL91269.1| AT3g60770/T4C21_180
           [Arabidopsis thaliana] gi|332646585|gb|AEE80106.1| 40S
           ribosomal protein S13-1 [Arabidopsis thaliana]
          Length = 151

 Score =  275 bits (702), Expect = 1e-71
 Identities = 135/148 (91%), Positives = 141/148 (95%)
 Frame = +3

Query: 69  MGRMHSRGKGISSSALPYKRTPPSWLKTSSQDVDESICKFSKKGLTPSQIGVFLRDSHGI 248
           MGRMHSRGKGIS+SALPYKR+ PSWLKT+ QDVDESICKF+KKGLTPSQIGV LRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 249 PQLKVVTGSKVLRILKAHGLAPEIPEDLYQLIKKAVAIRKHLERNRKDKDSKFRLILVES 428
           PQ+K VTGSK+LRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 429 RIHRLARYYKTIKKLPPVWKYESTTAST 512
           RIHRLARYYK  KKLPPVWKYESTTAST
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTAST 148


>ref|XP_002280012.1| PREDICTED: 40S ribosomal protein S13 [Vitis vinifera]
           gi|147820740|emb|CAN69640.1| hypothetical protein
           VITISV_028568 [Vitis vinifera]
           gi|296089171|emb|CBI38874.3| unnamed protein product
           [Vitis vinifera]
          Length = 151

 Score =  275 bits (702), Expect = 1e-71
 Identities = 135/148 (91%), Positives = 141/148 (95%)
 Frame = +3

Query: 69  MGRMHSRGKGISSSALPYKRTPPSWLKTSSQDVDESICKFSKKGLTPSQIGVFLRDSHGI 248
           MGRMHSRGKGISSSALPYKRTPPSWLK SSQDV+E+ICKF+KKG+TPSQIGV LRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGMTPSQIGVILRDSHGI 60

Query: 249 PQLKVVTGSKVLRILKAHGLAPEIPEDLYQLIKKAVAIRKHLERNRKDKDSKFRLILVES 428
            Q+K VTGSK+LRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 429 RIHRLARYYKTIKKLPPVWKYESTTAST 512
           RIHRLARYYK  KKLPPVWKYESTTAST
Sbjct: 121 RIHRLARYYKRTKKLPPVWKYESTTAST 148


>ref|XP_002878348.1| 40S ribosomal protein S13 [Arabidopsis lyrata subsp. lyrata]
           gi|297324186|gb|EFH54607.1| 40S ribosomal protein S13
           [Arabidopsis lyrata subsp. lyrata]
          Length = 151

 Score =  273 bits (699), Expect = 2e-71
 Identities = 134/148 (90%), Positives = 141/148 (95%)
 Frame = +3

Query: 69  MGRMHSRGKGISSSALPYKRTPPSWLKTSSQDVDESICKFSKKGLTPSQIGVFLRDSHGI 248
           MGRMHS+GKGIS+SALPYKR+ PSWLKT+ QDVDESICKF+KKGLTPSQIGV LRDSHGI
Sbjct: 1   MGRMHSKGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 249 PQLKVVTGSKVLRILKAHGLAPEIPEDLYQLIKKAVAIRKHLERNRKDKDSKFRLILVES 428
           PQ+K VTGSK+LRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 429 RIHRLARYYKTIKKLPPVWKYESTTAST 512
           RIHRLARYYK  KKLPPVWKYESTTAST
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTAST 148