BLASTX nr result

ID: Coptis23_contig00003566 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003566
         (2876 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263978.2| PREDICTED: GTP-binding protein At3g49725, ch...   240   1e-60
ref|XP_002301383.1| predicted protein [Populus trichocarpa] gi|2...   233   2e-58
ref|XP_002320164.1| predicted protein [Populus trichocarpa] gi|2...   230   1e-57
ref|XP_002533316.1| hevamine-A precursor, putative [Ricinus comm...   229   4e-57
ref|XP_002279147.1| PREDICTED: acidic endochitinase [Vitis vinif...   229   4e-57

>ref|XP_002263978.2| PREDICTED: GTP-binding protein At3g49725, chloroplastic-like, partial
            [Vitis vinifera]
          Length = 555

 Score =  240 bits (613), Expect = 1e-60
 Identities = 132/215 (61%), Positives = 164/215 (76%), Gaps = 14/215 (6%)
 Frame = -1

Query: 1166 GKSTLVNALSESDLYSDDRLFATVDPRVRSVMLPSGRKVLLSDTVGFISDLPVQLVEAFH 987
            GKSTLV+ALSESDL+SDDRLFATVDPR+RSV+LPSGRKVLLSDTVGFISDLPVQLVEAFH
Sbjct: 271  GKSTLVSALSESDLFSDDRLFATVDPRLRSVILPSGRKVLLSDTVGFISDLPVQLVEAFH 330

Query: 986  ATLEEVVEADLLVHVIDSSAVDLEEQRSSVLEVLQQIGVPKEKLQNMIEVWNKIDLRGER 807
            ATLEEVVEADLLVHV+DSSA DL+EQRS VL+VLQQIGV +EKLQNM+EVWNKIDL+ E 
Sbjct: 331  ATLEEVVEADLLVHVLDSSASDLDEQRSVVLQVLQQIGVSEEKLQNMLEVWNKIDLQEEE 390

Query: 806  --ADDSLSDAEEYGLTEADNGTESGTLSEEIV-------DEDNSVSELTPGECRENVDER 654
              AD  L + E+  + ++ +G E   +  E+        DE++ VSEL+ G+ +E +D+ 
Sbjct: 391  MGADKYLDNGED-DVVDSLSGAEDDDMPSELPAEPVDDDDENDIVSELSSGDVQETMDDH 449

Query: 653  ENDSLDDW-----KAVDDQQDSLEDWKAVDDQEND 564
            E D  D W     +  +D Q +   WK +DDQ+++
Sbjct: 450  EGDYSDGWLSRGGEGSEDDQGNPSRWKTMDDQQSE 484



 Score = 59.7 bits (143), Expect = 4e-06
 Identities = 31/57 (54%), Positives = 38/57 (66%)
 Frame = -3

Query: 390 QDVKPLETSAIMGIGLQEVLNLIDEKLDKQNVAGTRSFDKFNRKWRPPRNADVDTAV 220
           Q +  ++TSA+MG+GLQE+L LIDEKL+ Q V     FD   RKWRPP   DV  AV
Sbjct: 501 QCIPHVKTSAVMGVGLQELLALIDEKLETQKVPERNYFD---RKWRPPHTEDVGVAV 554


>ref|XP_002301383.1| predicted protein [Populus trichocarpa] gi|222843109|gb|EEE80656.1|
            predicted protein [Populus trichocarpa]
          Length = 298

 Score =  233 bits (595), Expect = 2e-58
 Identities = 113/152 (74%), Positives = 127/152 (83%)
 Frame = -1

Query: 1952 SFLGSNL*SRQNW*IYTVLDGIDFDIEGCSNLYWDDLARYLSGYSKKGK*VYLTAAPQCP 1773
            +FLG N  SR       VLDG+DFDIEG +NLYWDDLARYLS YSKKGK V+LTAAPQCP
Sbjct: 128  NFLGGNTSSRPLG--PAVLDGVDFDIEGGTNLYWDDLARYLSAYSKKGKRVHLTAAPQCP 185

Query: 1772 FPDAWVGGALKTGFFDYVCVQFYSNLPCQYASGSITNIEDAWKQWTTSIAGAQIFLGLPA 1593
            FPDAWVG ALKTG FDYV VQFY+N PC YASG +TN+EDAWKQWT++I  ++IFLGLPA
Sbjct: 186  FPDAWVGNALKTGLFDYVWVQFYNNPPCHYASGEVTNLEDAWKQWTSAIPASKIFLGLPA 245

Query: 1592 APRAAGSGFIPVNDLTSEVLPAIKGSSKYGGV 1497
            +P AAGSGFIPV DLTS VLP+IK SS+YGGV
Sbjct: 246  SPEAAGSGFIPVPDLTSNVLPSIKDSSRYGGV 277


>ref|XP_002320164.1| predicted protein [Populus trichocarpa] gi|222860937|gb|EEE98479.1|
            predicted protein [Populus trichocarpa]
          Length = 300

 Score =  230 bits (587), Expect = 1e-57
 Identities = 108/135 (80%), Positives = 119/135 (88%)
 Frame = -1

Query: 1901 VLDGIDFDIEGCSNLYWDDLARYLSGYSKKGK*VYLTAAPQCPFPDAWVGGALKTGFFDY 1722
            VLDGIDFDIEG + LYWDDLARYLS YS KGK V+LTAAPQCPFPDAWVG ALKTG FDY
Sbjct: 145  VLDGIDFDIEGGTGLYWDDLARYLSAYSNKGKRVHLTAAPQCPFPDAWVGNALKTGLFDY 204

Query: 1721 VCVQFYSNLPCQYASGSITNIEDAWKQWTTSIAGAQIFLGLPAAPRAAGSGFIPVNDLTS 1542
            V VQFY+N PCQYASG +TN+EDAWKQWT++I  ++IFLGLPA+P AAGSGFIPV DLTS
Sbjct: 205  VWVQFYNNPPCQYASGEVTNLEDAWKQWTSAIPASKIFLGLPASPAAAGSGFIPVPDLTS 264

Query: 1541 EVLPAIKGSSKYGGV 1497
             VLP+IK SSKYGGV
Sbjct: 265  NVLPSIKDSSKYGGV 279


>ref|XP_002533316.1| hevamine-A precursor, putative [Ricinus communis]
            gi|223526860|gb|EEF29073.1| hevamine-A precursor,
            putative [Ricinus communis]
          Length = 298

 Score =  229 bits (583), Expect = 4e-57
 Identities = 107/135 (79%), Positives = 116/135 (85%)
 Frame = -1

Query: 1901 VLDGIDFDIEGCSNLYWDDLARYLSGYSKKGK*VYLTAAPQCPFPDAWVGGALKTGFFDY 1722
            VLDGIDFDIEG + LYWDDLARYLS YS KGK VYLTAAPQCPFPDAWVG AL TG FDY
Sbjct: 143  VLDGIDFDIEGGTGLYWDDLARYLSAYSSKGKKVYLTAAPQCPFPDAWVGKALNTGLFDY 202

Query: 1721 VCVQFYSNLPCQYASGSITNIEDAWKQWTTSIAGAQIFLGLPAAPRAAGSGFIPVNDLTS 1542
            V VQFY+N PCQY+SG +TN+EDAWKQW + I   +IFLGLPA+P AAGSGFIPV DLTS
Sbjct: 203  VWVQFYNNPPCQYSSGEVTNLEDAWKQWISDIPATEIFLGLPASPEAAGSGFIPVPDLTS 262

Query: 1541 EVLPAIKGSSKYGGV 1497
             VLPAIKGS+KYGGV
Sbjct: 263  SVLPAIKGSTKYGGV 277


>ref|XP_002279147.1| PREDICTED: acidic endochitinase [Vitis vinifera]
          Length = 298

 Score =  229 bits (583), Expect = 4e-57
 Identities = 107/135 (79%), Positives = 118/135 (87%)
 Frame = -1

Query: 1901 VLDGIDFDIEGCSNLYWDDLARYLSGYSKKGK*VYLTAAPQCPFPDAWVGGALKTGFFDY 1722
            VLDGIDFDIEG +N +WDDL  +LSGYSKKGK VYLTAAPQCPFPDAWVGGALKTG FDY
Sbjct: 143  VLDGIDFDIEGGTNQHWDDLTTFLSGYSKKGKKVYLTAAPQCPFPDAWVGGALKTGLFDY 202

Query: 1721 VCVQFYSNLPCQYASGSITNIEDAWKQWTTSIAGAQIFLGLPAAPRAAGSGFIPVNDLTS 1542
            V VQFY+N PCQY SG++ ++EDAWKQWT+ I   +IFLGLPAAP AAGSGFIPV DLTS
Sbjct: 203  VWVQFYNNPPCQYTSGNVGSLEDAWKQWTSDIPATKIFLGLPAAPEAAGSGFIPVADLTS 262

Query: 1541 EVLPAIKGSSKYGGV 1497
             VLPAIKGS+KYGGV
Sbjct: 263  TVLPAIKGSAKYGGV 277


Top