BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003516
         (1738 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521010.1| DNA binding protein, putative [Ricinus commu...   411   e-112
ref|XP_002282584.2| PREDICTED: transcription factor bHLH3-like [...   400   e-109
ref|XP_004151980.1| PREDICTED: transcription factor bHLH3-like [...   398   e-108
gb|ADL36590.1| BHLH domain class transcription factor [Malus x d...   397   e-108
ref|XP_002302066.1| predicted protein [Populus trichocarpa] gi|2...   392   e-106

>ref|XP_002521010.1| DNA binding protein, putative [Ricinus communis]
            gi|223539847|gb|EEF41427.1| DNA binding protein, putative
            [Ricinus communis]
          Length = 503

 Score =  411 bits (1056), Expect = e-112
 Identities = 226/404 (55%), Positives = 276/404 (68%), Gaps = 8/404 (1%)
 Frame = +2

Query: 362  VLQQLHGLFGGAAPPRF----DSVSDVQIFYLTSVYYSFPFDDAPSGPAWSFASNRPIWA 529
            VLQ+LH  F  +    +    + VSDV++FYLTS+Y++F  D A  GPA S+ S R IWA
Sbjct: 116  VLQKLHSCFNASDGDNYAANLNGVSDVEMFYLTSMYFTFRCDSA-YGPAESYKSGRSIWA 174

Query: 530  SDQKNCLDHYSSRSFLARSAGFNTLVCVPIQSGVVELGSLKHCPEDHNVLQMIQNVFSGS 709
            SD   CL+HY  RSFLARSAGF TL   P++SGVVELGS+K  PE+H + +  + +F G+
Sbjct: 175  SDVITCLEHYHLRSFLARSAGFQTLAFFPVKSGVVELGSIKSIPEEHIIGERAKTIFGGA 234

Query: 710  RGSTSSLVPKIFGHDLSLGNAKPRSLTMNFSPKVEEDMDFSS----ASYTNQASISGHSN 877
                +   PKIFG +LSLG++K RS+++NFSPKVE+D+ F+S    A  TN  + S  S 
Sbjct: 235  NALQAKTCPKIFGRELSLGSSKSRSISINFSPKVEDDLIFTSEYPEAIGTNPVNGSTSSG 294

Query: 878  GLADQEYGTYXXXXXXXXXXXXKFFLQRNHNLPGGLNPQVKILSSDQSLKDESSRPDERK 1057
              +D                  K F   N     G N +  +   +Q  +D S   +ERK
Sbjct: 295  CPSD--------------INEAKLFPHLNQMNVPGFNTETMVTGLEQPKEDLSPHQNERK 340

Query: 1058 PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYIT 1237
            PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYIT
Sbjct: 341  PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYIT 400

Query: 1238 DLQMKIRVLETEKEMTRNNNQKQPLVPDIDVQTRQEDTVVRVSCPLDAHPVSRVIRAFQE 1417
            DLQ KIRVLETEKEM+ NNNQ Q  V +ID Q RQED VVRVSCPLD HPVS ++ +F+E
Sbjct: 401  DLQTKIRVLETEKEMS-NNNQNQFPVTEIDFQARQEDAVVRVSCPLDVHPVSSILESFRE 459

Query: 1418 TQVAVHESEVSTTDNDSVLHTFSIRTQGGASEHLKERLIAALSR 1549
             QV   E  +S  +ND ++HTFSIRTQGGA+E LKE+L A  S+
Sbjct: 460  HQVTAQECNMSAAENDKIIHTFSIRTQGGAAEQLKEKLEAVFSK 503


>ref|XP_002282584.2| PREDICTED: transcription factor bHLH3-like [Vitis vinifera]
          Length = 491

 Score =  400 bits (1029), Expect = e-109
 Identities = 228/406 (56%), Positives = 275/406 (67%), Gaps = 10/406 (2%)
 Frame = +2

Query: 362  VLQQLHGLFGGAAPPRF----DSVSDVQIFYLTSVYYSFPFDDAPSGPAWSFASNRPIWA 529
            VL++LH  FG     ++    D +S++++FYLTS++YSF   D   GPA    S R +W 
Sbjct: 105  VLKKLHEYFGVGEEDKYWAKLDLLSNIEMFYLTSMFYSFS-GDLQYGPALVLKSGRWVWV 163

Query: 530  SDQKNCLDHYSSRSFLARSAGFNTLVCVPIQSGVVELGSLKHCPEDHNVLQMIQNVFSGS 709
             D   C D Y +RS LAR AGF T+V VP++ GV+E+ SL    ED NV++MI+ VF G 
Sbjct: 164  VDAVGCSDQYRARSVLARLAGFQTVVFVPVKDGVIEVASLMLVKEDENVVKMIKGVFGGM 223

Query: 710  RGSTSSLVPKIFGHDLSLGN-AKPRSLTMNFSPKVEEDMDFSSASYTNQASISGH----- 871
                + + PKIFGH+LSLG+ AK RS+++NF+PK+E D  F + SY  Q   S       
Sbjct: 224  NFGQAKVYPKIFGHELSLGSGAKSRSMSINFAPKLEGDSGFGAESYDVQGLGSNQVYGNS 283

Query: 872  SNGLADQEYGTYXXXXXXXXXXXXKFFLQRNHNLPGGLNPQVKILSSDQSLKDESSRPDE 1051
            SNG  +++                K F Q N       N QV +   +Q   D   R DE
Sbjct: 284  SNGCMNED-------------NEGKIFPQLNQIF----NAQVLVSGFEQPKDDLLPRVDE 326

Query: 1052 RKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITY 1231
            RKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAI+Y
Sbjct: 327  RKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISY 386

Query: 1232 ITDLQMKIRVLETEKEMTRNNNQKQPLVPDIDVQTRQEDTVVRVSCPLDAHPVSRVIRAF 1411
            ITDLQMKIR+LE EKE+  NN Q Q  VP ID Q RQEDTVVRVSCPLDAHPVSRVI+  
Sbjct: 387  ITDLQMKIRILEAEKEIV-NNKQNQSPVPQIDFQDRQEDTVVRVSCPLDAHPVSRVIKTL 445

Query: 1412 QETQVAVHESEVSTTDNDSVLHTFSIRTQGGASEHLKERLIAALSR 1549
            +E QV   E+EVST +ND VLHTFSIRTQ GA+E LKE+L+AALS+
Sbjct: 446  KEHQVVAPEAEVSTMENDKVLHTFSIRTQTGAAECLKEKLVAALSK 491


>ref|XP_004151980.1| PREDICTED: transcription factor bHLH3-like [Cucumis sativus]
            gi|449505155|ref|XP_004162392.1| PREDICTED: transcription
            factor bHLH3-like [Cucumis sativus]
          Length = 501

 Score =  398 bits (1023), Expect = e-108
 Identities = 219/406 (53%), Positives = 270/406 (66%), Gaps = 10/406 (2%)
 Frame = +2

Query: 362  VLQQLHGLFGGAAPP----RFDSVSDVQIFYLTSVYYSFPFDDAPSGPAWSFASNRPIWA 529
            VLQ L   FG +       R D  SD+++ YLTS YY F  D   S    S+ S + IWA
Sbjct: 114  VLQMLQSSFGRSDEDGYGARRDEASDIEMLYLTSKYYKFMCDSG-SSLGESYKSGKSIWA 172

Query: 530  SDQKNCLDHYSSRSFLARSAGFNTLVCVPIQSGVVELGSLKHCPEDHNVLQMIQNVFSGS 709
            SD  +CL +Y SR FLA+ AGF TLV VP++ GVVELGS K  PED  VL++++  F GS
Sbjct: 173  SDVTSCLRNYQSRGFLAKVAGFQTLVFVPVKLGVVELGSTKSIPEDQGVLELVRASFGGS 232

Query: 710  RGSTSSLVPKIFGHDLSLGNAKPRSLTMNFSPKVEEDMDFSSASYTNQASISGH-----S 874
              +     P+IFGH+LSLG  KPRSL++NFSPK+E+D +FSS  Y  Q     H     S
Sbjct: 233  ITAQLKAFPRIFGHELSLGGTKPRSLSINFSPKLEDDTNFSSEGYELQGLGGNHIFGNSS 292

Query: 875  NGLADQEYGTYXXXXXXXXXXXXKFFLQRNHNLPGGLNPQVKILSSDQSLKDESSRPDER 1054
            NG    +                K F   N  + GG N Q ++ + +    + S + D+R
Sbjct: 293  NGCRGDDNDA-------------KMFPHGNQEVVGGFNAQTRLSTMEFPRDESSPQGDDR 339

Query: 1055 KPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYI 1234
            KPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYI
Sbjct: 340  KPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYI 399

Query: 1235 TDLQMKIRVLETEKEMTRNNNQKQPLVPDIDVQTRQEDTVVRVSCPLDAHPVSRVIRAFQ 1414
            TDLQMKI+V+ETEK++     +      +ID   R+ED VVRVSCPLD HPVS+VI+ F+
Sbjct: 400  TDLQMKIKVMETEKQIASGREKN----TEIDFHAREEDAVVRVSCPLDLHPVSKVIKTFR 455

Query: 1415 ETQVAVHESEVST-TDNDSVLHTFSIRTQGGASEHLKERLIAALSR 1549
            E Q+   ES V+T TDND V+H+F IRT+GGA+E LKE+L+AALS+
Sbjct: 456  EHQIEAQESNVTTSTDNDKVIHSFFIRTEGGAAEQLKEKLVAALSK 501


>gb|ADL36590.1| BHLH domain class transcription factor [Malus x domestica]
          Length = 502

 Score =  397 bits (1019), Expect = e-108
 Identities = 222/404 (54%), Positives = 279/404 (69%), Gaps = 6/404 (1%)
 Frame = +2

Query: 356  RVVLQQLHGLFGGAAPP----RFDSVSDVQIFYLTSVYYSFPFDD-APSGPAWSFASNRP 520
            ++V+++LH  FGG        R D VSDV++FYLTS+ Y+F  D  +  GPA S+ S + 
Sbjct: 116  KLVVEKLHACFGGLNADNYARRLDGVSDVEMFYLTSMCYAFQLDSISHCGPAESYNSRKS 175

Query: 521  IWASDQKNCLDHYSSRSFLARSAGFNTLVCVPIQSGVVELGSLKHCPEDHNVLQMIQNVF 700
            IW SD  +CL HY SRSFLAR AGF T+V VP++SGVVELGS+K   E+ + + M+++ F
Sbjct: 176  IWVSDAGSCLHHYQSRSFLARLAGFQTVVFVPMKSGVVELGSVKSTLEEQSYVDMVRSAF 235

Query: 701  SGSRGSTSSLVPKIFGHDLSLGNAKPRSLTMNFSPKVEEDMDFSSASYTNQASISGHSNG 880
              S        P IFG +LSLG  K +S+ ++F+PK+EED  F S S+  Q+   G SNG
Sbjct: 236  WESSPIQPKAFPMIFGRELSLGGPKSQSVNVSFTPKIEEDFVFPSESFELQSV--GTSNG 293

Query: 881  LADQEYGTYXXXXXXXXXXXXKFFLQRNHNLPGGLNPQVKILSSDQSLKDESS-RPDERK 1057
               +                 K F Q N  +  G N Q ++ SS + LKDESS + DE+K
Sbjct: 294  FRSE-------------GGEVKLFPQMNQMMVDGFNTQTRV-SSSELLKDESSTQVDEQK 339

Query: 1058 PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYIT 1237
            PRKRGRKP+NGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIT+IT
Sbjct: 340  PRKRGRKPSNGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHIT 399

Query: 1238 DLQMKIRVLETEKEMTRNNNQKQPLVPDIDVQTRQEDTVVRVSCPLDAHPVSRVIRAFQE 1417
            DLQ KIRV+ETEK+M  NN  KQ  VP+ID Q R  D VVR++ PLD+HPVS VIR  +E
Sbjct: 400  DLQTKIRVIETEKQMV-NNKGKQLPVPEIDFQERHGDAVVRMNFPLDSHPVSDVIRTLRE 458

Query: 1418 TQVAVHESEVSTTDNDSVLHTFSIRTQGGASEHLKERLIAALSR 1549
             ++   ES VS TDND V+HTFSI+TQGG +E L+E+L+A LS+
Sbjct: 459  HKIVPQESNVSITDNDKVIHTFSIQTQGGDAEKLREKLVAFLSK 502



 Score = 58.2 bits (139), Expect = 7e-06
 Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 3   KAVAESVLGSQALEFLIXXXXXXXXXXXXXXXXP-AVQQELARLVGALDWTYAILWQVSR 179
           K + ESVLG++A  FLI                   VQQ L +LV   +W YAI WQ   
Sbjct: 12  KVMVESVLGTEACRFLISLASENVLSDLIRPPGKLGVQQGLCQLVNGSNWNYAIFWQAVG 71

Query: 180 SKSGELNLVWGQGHCK 227
           SKSG   L WG GHC+
Sbjct: 72  SKSGGSALSWGDGHCR 87


>ref|XP_002302066.1| predicted protein [Populus trichocarpa] gi|222843792|gb|EEE81339.1|
            predicted protein [Populus trichocarpa]
          Length = 473

 Score =  392 bits (1007), Expect = e-106
 Identities = 218/402 (54%), Positives = 273/402 (67%), Gaps = 4/402 (0%)
 Frame = +2

Query: 356  RVVLQQLHGLFGGAAPPRF----DSVSDVQIFYLTSVYYSFPFDDAPSGPAWSFASNRPI 523
            + VL++LH  F G+    F    D VSDV++FYLTS+Y++F  D A  GP  +F S R I
Sbjct: 114  KCVLRKLHACFNGSDDGSFAASLDEVSDVEMFYLTSMYFTFRCDSA-YGPGEAFKSGRSI 172

Query: 524  WASDQKNCLDHYSSRSFLARSAGFNTLVCVPIQSGVVELGSLKHCPEDHNVLQMIQNVFS 703
            WAS   +CLDHY  RS LARSAGF T+V +P++SGV+ELGS+K  PE+H+ ++  + +F 
Sbjct: 173  WASSMPSCLDHYQLRSVLARSAGFQTVVFLPVKSGVLELGSVKSIPEEHDFVEKAKGLFG 232

Query: 704  GSRGSTSSLVPKIFGHDLSLGNAKPRSLTMNFSPKVEEDMDFSSASYTNQASISGHSNGL 883
             S  + +  VPKIFG +LSLG +K RS+++NFSPKVE+++ F+S SY  +A+ +      
Sbjct: 233  ASNNAQAKAVPKIFGRELSLGGSKSRSISINFSPKVEDELVFTSESYAMKATST------ 286

Query: 884  ADQEYGTYXXXXXXXXXXXXKFFLQRNHNLPGGLNPQVKILSSDQSLKDESSRPDERKPR 1063
             +Q YG                       + GGL         +Q   D S + DERKPR
Sbjct: 287  -NQVYG-----------------------MVGGL---------EQPNDDLSPQGDERKPR 313

Query: 1064 KRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDL 1243
            KRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDL
Sbjct: 314  KRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDL 373

Query: 1244 QMKIRVLETEKEMTRNNNQKQPLVPDIDVQTRQEDTVVRVSCPLDAHPVSRVIRAFQETQ 1423
            Q KI  LETE+ +  NNNQKQ  VP+ID Q  Q+D VVR SCPLD+HPVS +I  F+E Q
Sbjct: 374  QKKIGALETERGVV-NNNQKQLPVPEIDFQPGQDDAVVRASCPLDSHPVSSIIETFREHQ 432

Query: 1424 VAVHESEVSTTDNDSVLHTFSIRTQGGASEHLKERLIAALSR 1549
            +   E  VS  + D ++HTFSIRT  GA+E LKE+L AALS+
Sbjct: 433  ITAQECNVS-MEGDKIVHTFSIRTPSGAAEQLKEKLEAALSK 473