BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003422
         (825 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [S...    44   8e-08
dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]     49   1e-07
gb|ACE80735.1| pentatricopeptide repeat protein [Diplophyllum al...    44   1e-07
ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containi...    45   3e-07
gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indi...    47   3e-07

>ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
           gi|241928520|gb|EES01665.1| hypothetical protein
           SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score = 43.9 bits (102), Expect(2) = 8e-08
 Identities = 19/49 (38%), Positives = 33/49 (67%)
 Frame = -3

Query: 646 GQQAIVATVKRLIKDRGVKTKPGCCWIEVKNKIHVFETAGCAHVPELRR 500
           GQ   VA V+ ++++RG+K +PGC ++E K ++H+F     +H P+ RR
Sbjct: 483 GQLDCVARVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSH-PQARR 530



 Score = 38.9 bits (89), Expect(2) = 8e-08
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = -2

Query: 521 SCARTEAGLERE-LSIAFGM-STQDGEPIRVVRILRTCEDSHNSIKFISASLNSLF 360
           + A+   G+  E L++AFG+ +T+ G  I V++ LR C D H+ +K +SA+ N  F
Sbjct: 563 AAAQPLVGIHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKVVSATTNRAF 618


>dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score = 49.3 bits (116), Expect(2) = 1e-07
 Identities = 19/43 (44%), Positives = 30/43 (69%)
 Frame = -3

Query: 646 GQQAIVATVKRLIKDRGVKTKPGCCWIEVKNKIHVFETAGCAH 518
           G+    A V++L++D+G+K  PG  W+EVKNK+HVF+    +H
Sbjct: 745 GKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSH 787



 Score = 32.7 bits (73), Expect(2) = 1e-07
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 512 RTEAGLERELSIAFG-MSTQDGEPIRVVRILRTCEDSHNSIKFIS 381
           R+E     +L++AFG M+     PI +++ LR C D H  IK IS
Sbjct: 816 RSEIHHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLIS 860


>gb|ACE80735.1| pentatricopeptide repeat protein [Diplophyllum albicans]
          Length = 152

 Score = 43.9 bits (102), Expect(2) = 1e-07
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = -3

Query: 631 VATVKRLIKDRGVKTKPGCCWIEVKNKIHVFETAGCAHVPE 509
           V+ V++L+++RGV+ +PG  WIEV NKIH F  AG  + PE
Sbjct: 9   VSLVRKLMEERGVRKEPGRSWIEVDNKIHEF-VAGDTYHPE 48



 Score = 38.1 bits (87), Expect(2) = 1e-07
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 518 CARTEAGLERELSIAFG-MSTQDGEPIRVVRILRTCEDSHNSIKFIS 381
           CA +E     +L+IA+G M    GEPIRV + LR C D H + K IS
Sbjct: 89  CAHSE-----KLAIAYGLMRIPRGEPIRVTKDLRVCPDCHTATKLIS 130


>ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score = 45.4 bits (106), Expect(2) = 3e-07
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = -3

Query: 628 ATVKRLIKDRGVKTKPGCCWIEVKNKIHVFETAGCAH 518
           A V++L++D+G+K  PG  W+EV N++HVF+    +H
Sbjct: 748 AQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSH 784



 Score = 35.4 bits (80), Expect(2) = 3e-07
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 512 RTEAGLERELSIAFG-MSTQDGEPIRVVRILRTCEDSHNSIKFIS 381
           R+E     +L++AFG MS     PI +++ LR C+D H  IK IS
Sbjct: 813 RSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLIS 857


>gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score = 46.6 bits (109), Expect(2) = 3e-07
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = -3

Query: 628 ATVKRLIKDRGVKTKPGCCWIEVKNKIHVFETAGCAH 518
           A V++L++D+G+K  PG  W+EV+NK+HVF+    +H
Sbjct: 727 AQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSH 763



 Score = 34.3 bits (77), Expect(2) = 3e-07
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 512 RTEAGLERELSIAFG-MSTQDGEPIRVVRILRTCEDSHNSIKFISA 378
           R+E     +L++AFG MS     PI +++ LR C D H  IK IS+
Sbjct: 792 RSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISS 837