BLASTX nr result
ID: Coptis23_contig00003368
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00003368
(2128 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicag... 154 1e-34
emb|CAH66127.1| OSIGBa0135L04.1 [Oryza sativa Indica Group] 136 2e-29
gb|EEC82987.1| hypothetical protein OsI_28022 [Oryza sativa Indi... 133 2e-28
gb|AFW63447.1| hypothetical protein ZEAMMB73_293789 [Zea mays] 129 3e-27
gb|AFW85172.1| hypothetical protein ZEAMMB73_007991 [Zea mays] 128 7e-27
>ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|357477581|ref|XP_003609076.1| Replication factor A 51
kDa subunit [Medicago truncatula]
gi|357477673|ref|XP_003609122.1| Replication factor A 51
kDa subunit [Medicago truncatula]
gi|355507966|gb|AES89108.1| Replication factor A 51 kDa
subunit [Medicago truncatula] gi|355510131|gb|AES91273.1|
Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355510177|gb|AES91319.1| Replication factor A 51 kDa
subunit [Medicago truncatula]
Length = 502
Score = 154 bits (388), Expect = 1e-34
Identities = 132/483 (27%), Positives = 224/483 (46%), Gaps = 29/483 (6%)
Frame = -2
Query: 1833 LSTLRTGTTKLKIKVRLTRMWESIHWNNNNEVLSRDFLLLDAK------GTHVHARLESK 1672
L+ L KIKVR+ RMW++++ E++S D +L+D K +HA + +
Sbjct: 23 LNKLSNAAPDTKIKVRVARMWDTLNITKKKEIISTDMVLIDEKVFINEIANCIHATIPRR 82
Query: 1671 DFKEFDKFAKGALLEEGNIYVIERFDVVLATTYRPVV--HPFVIKFKPETLIQLADEGGA 1498
K +L+EG IYVI F+V VV +P ++ F + ++
Sbjct: 83 FSPSLKK-----VLQEGKIYVISHFEVSKNKEKYAVVENNPSMLSFYGDAIVTEEGSDDN 137
Query: 1497 EIARYNFNFIEFNAVPEKVKQKTLLSDVIGVLKKFGSTKQK---SGSV-LKEIVLMDQKR 1330
I RY F F+ FN + ++ K +L+DVIG + ++K +G V + + L D
Sbjct: 138 TIPRYIFEFVNFNDLIKRC-GKEVLADVIGFIIDVDPIEEKTTVNGKVDMLSLHLGDGSG 196
Query: 1329 AEVTITLWGDLVGSIPDSLLTQQNV-----IIIATSLAARDYQD--KITLSSVSGTKIYV 1171
+ +TLW D L+ Q + + I TS + YQ ++ +SS T IY+
Sbjct: 197 NVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYI 256
Query: 1170 NLDTHAVTEYKRRIEAANILVELEAPPQNLSEEALLSDKRV---TIGELKDMGRDQSYKG 1000
N+DT E A++++ + L LS V TI EL M Y+G
Sbjct: 257 NIDTP---------EVADLILSSKGKNSVLKTTETLSLTNVDVKTISELLSMAVSGVYQG 307
Query: 999 S-SYTCNAIIDKVYSSN-WYYNCCKRCMKTIAHTDPNTHCRKC--RVDSEK-KYKLRFAV 835
Y C A +D + N YY C C KT++ T+ + +C C +VD K +Y+L V
Sbjct: 308 DVVYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQV 367
Query: 834 NDFSDITTFVAFNKHAEHLIKKSVEELEIIHKDQGAK--AVQTELSKLEGRSYIFQVQIT 661
ND ++ T FV F + AE L + +++L ++Q + + +L + G +IFQV+++
Sbjct: 368 NDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKLS 427
Query: 660 EFSAKEGFESFTVEKVYTDQAVIDCQLDEQGNQDASVESAAGVVEEADPGKELNSELAPS 481
+ + G +SFT K+ + V+ + ++ S S + +E D K+ + S
Sbjct: 428 SYFERRGVQSFTAHKIL--KPVVKIEKEDNIATACSSSSGSLTIEIPDLPKKRRKLILHS 485
Query: 480 KKN 472
K+
Sbjct: 486 NKS 488
>emb|CAH66127.1| OSIGBa0135L04.1 [Oryza sativa Indica Group]
Length = 502
Score = 136 bits (343), Expect = 2e-29
Identities = 112/423 (26%), Positives = 186/423 (43%), Gaps = 16/423 (3%)
Frame = -2
Query: 1833 LSTLRTGTTKLKIKVRLTRMWESIHWNNNNEVLSRDFLLLDAKGTHVHARLESKDFKEFD 1654
+S L G +I R++R+W+ N + + D +LLD G +HA++
Sbjct: 6 ISQLSCGDLNTRILARVSRLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSL- 64
Query: 1653 KFAKGALLEEGNIYVIERFDVVLAT-TYRPVVHPFVIKFKPETLIQLADEGGAEIARYNF 1477
LL+E +Y I+ F V A TYRPV + +I F T + E A+ F
Sbjct: 65 ----RPLLKEQKVYYIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIEPAADFPGITF 120
Query: 1476 NFIEFNAVPEKVKQKTLLSDVIGVLKKFGS------TKQKSGSVLKEIVLMDQKRAEVTI 1315
+ F+ +P V + DV+GV+ + GS + + S+ + I + D + + I
Sbjct: 121 SLTPFSDIPHLVDKTIFYVDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPI 180
Query: 1314 TLWGDL-----VGSIPDSLLTQQNVIIIATSLAARDYQD-KITLSSVSGTKIYVNLDTHA 1153
TLWG+ S+ ++ TQ VI+ +L +DY +T++ S K Y+NLD
Sbjct: 181 TLWGERADAFDANSVYNAGQTQAQVIVFVGTL-VKDYTGLGLTVTGSSPCKWYLNLDIPE 239
Query: 1152 VTEYKRRIEAANILVELEAPPQNLSEEALLSDKRVTIGELKDMGRDQSYKGSSYTCNAII 973
V E K A V P + +K TI E+ + ++ + + + N +
Sbjct: 240 VLELKESFSANFRPVSWVDNPATGYNQDTAEEK--TIQEILALNPHKN-RSTRFIVNVTV 296
Query: 972 DKVYSSN-WYYNCCKRCMKTIAHTDPNTHCRKCRVDS--EKKYKLRFAVNDFSDITTFVA 802
++ S N W+YN C+ C +T + C C + +YK+ D S TF+
Sbjct: 297 RRICSENSWWYNSCRLCYRTSKPYGSSYKCSSCSNIGIPDPRYKVVLITGDASSNATFIL 356
Query: 801 FNKHAEHLIKKSVEELEIIHKDQGAKAVQTELSKLEGRSYIFQVQITEFSAKEGFESFTV 622
F + A LIKKSVE L I + + E++ L ++ + V T + K ES V
Sbjct: 357 FGRVAHRLIKKSVESL-IEDNPPDSDYIPAEIAALVDSTFTWNVSFTRDTVKRSQESLQV 415
Query: 621 EKV 613
+
Sbjct: 416 NSI 418
>gb|EEC82987.1| hypothetical protein OsI_28022 [Oryza sativa Indica Group]
Length = 705
Score = 133 bits (334), Expect = 2e-28
Identities = 105/440 (23%), Positives = 202/440 (45%), Gaps = 16/440 (3%)
Frame = -2
Query: 1842 FQHLSTLRTGTTKLKIKVRLTRMWESIHWNNNNEVLSRDFLLLDAKGTHVHARLESKDFK 1663
++ +S L T IK ++ RMW+S+++ + E++S D LL+D +G +HA +
Sbjct: 3 YKKISELTTKGQTWSIKAKILRMWDSVNFATD-EIMSFDMLLMDEEGETIHATIWKNLID 61
Query: 1662 EFDKFAKGALLEEGNIYVIERFDVVLATTYRPVVHPFVIKFKPETLIQLADEGGAEIARY 1483
F ++ E +IY F V +T Y PV I F T ++ + Y
Sbjct: 62 NFRP-----MISENSIYAFSNFKVQESTKYCPVDKDLKITFMYNTKVKEMKGASNKFKEY 116
Query: 1482 NFNFIEFNAVPEKVKQKTLLSDVIGVLKKF----------GSTKQKSGSVLKEIVLMDQK 1333
F F + ++V + +LSDVIG+L K ST + + +EI L+
Sbjct: 117 YFEFATRETLVDRVNKDKILSDVIGLLTKIKPIESRMIMKNSTNPRPKDI-REIELLLLD 175
Query: 1332 RAEVTITLWGDLVGSIPDSLLTQQNVIIIATSLAARDYQDKITLSSVSGTKIYVNLDTHA 1153
A++ +TLWG L S+ + ++ V+++ TS +++ + ++L S S T++Y +++
Sbjct: 176 GAKIRVTLWGQLAHSLNEDVIGNHTVVVV-TSTTVQEF-NGLSLRSSSATRLYTDINIPE 233
Query: 1152 VTE-YKRRIEAANI--LVELEAPPQNLSEEALLSDKRVTIGELKDMGRDQSYKGSSYTC- 985
+ R + N+ L+E++ Q EE + +++ T+ E+ +MG D + K + C
Sbjct: 234 TWKIISRHSDEQNLPKLMEVDKSTQGTLEEQMFYNRK-TLQEITNMGHDDT-KSQDFICT 291
Query: 984 -NAIIDKVYSSNWYYNCCKRCMKTIAHTDPNTHCRKCRVDSEKKYKLRFAVNDFSDITTF 808
A ID + W+Y C C K + +C KC++ E
Sbjct: 292 TKATIDHLQDVTWWYMSCNDCNKKVVKKIDKYYCEKCKMYPENT---------------- 335
Query: 807 VAFNKHAEHLIKKSVEELEIIHKDQGAKAVQTELSKLEGRSYIFQVQITEFSAKEGFESF 628
++ S+ L + D + V T + +L GR++IFQ+++ + +G ++
Sbjct: 336 ------KPRMLNTSISSL-LNSLDGRCEEVPTIIQQLCGRTFIFQLKLNIENLTQGKSNY 388
Query: 627 TVEKVYTDQAVIDCQ-LDEQ 571
V + + ++ Q LD++
Sbjct: 389 IVRRTFVPDDKLEMQHLDDK 408
>gb|AFW63447.1| hypothetical protein ZEAMMB73_293789 [Zea mays]
Length = 520
Score = 129 bits (324), Expect = 3e-27
Identities = 101/441 (22%), Positives = 188/441 (42%), Gaps = 14/441 (3%)
Frame = -2
Query: 1842 FQHLSTLRTGTTKLKIKVRLTRMWESIHWNNNNEVLSRDFLLLDAKGTHVHARLESKDFK 1663
F ++ L +T I+VR+ R WE N+ + + +L D +GT +HA +++
Sbjct: 3 FTPIAELDPKSTNAAIRVRIIRKWEFRGATNDGPLRHVNLILADEQGTAIHAEIQAALVD 62
Query: 1662 EFDKFAKGALLEEGNIYVIERFDVVLATTY-RPVVHPFVIKFKPETLIQLADEGGAEIAR 1486
+ KG+L++ +Y ++RF V + Y +PV + +I+F T ++ ++ R
Sbjct: 63 D-----KGSLIQIDKVYELKRFRVTPSRNYYKPVDNSMMIQFTLYTQAKVVEDPPPTFPR 117
Query: 1485 YNFNFIEFNAVPEKVKQKTLLSDVIGVLKKFGSTKQ---KSGSVLKEIVLMDQKRAEVTI 1315
Y + F + V KT L DV+G+L + GS + +++++I L D +
Sbjct: 118 YAYKLTSFENIGNNVDNKTYLIDVLGILTEIGSLHHVGYNNSNIIRDIFLKDINNTSTKV 177
Query: 1314 TLWGDLVGSIPDSLLTQQN----VIIIATSLAARDYQDKITLSSVSGTKIYVNLD-THAV 1150
TLWG S + N V+++ A+ ++ + LS+ + Y N D A
Sbjct: 178 TLWGHQASSFSVDNIYDDNDNKPVVVLFVGCLAKRFKGEAYLSATAACTWYFNPDIPEAQ 237
Query: 1149 TEYKRRIEAANILVELEAPPQNLSEEALLSDKRVTIGELKDMGRDQSYKGSSYTCNAIID 970
Y + + ++ +A + L L+ + TI EL + D + + C I
Sbjct: 238 VYYSKLLNTKLQMIRPQATEKELQASQTLNIEDKTIEELLQLDPDM-FPEHGFKCTVTIS 296
Query: 969 K-VYSSNWYYNCCKRCMKTIAHTDPNTHCRKCR-VDSEKKYKLRFAVNDFSDITTFVAFN 796
+ V W++ C +C K+ + T C C ++ +YKL F D + F F+
Sbjct: 297 RLVQDGRWWFPSCIKCNKSSSQTSTGYQCTSCNGTETGFRYKLNFIATDGTSEAEFFCFD 356
Query: 795 KHAEHLIKKSVEELEIIHKDQGAKAVQTELSKLEGRSYIFQVQITEFSAKEGFESFTVEK 616
A+ ++ KS + L ++ +L+ + + F V I + F++
Sbjct: 357 SIAKRIVGKSCQTL--FSTSDVSRGPPPDLAAIISLKFTFVVTINMSAFSVTNRVFSILS 414
Query: 615 VYTD---QAVIDCQLDEQGNQ 562
V T QA I C Q
Sbjct: 415 VLTSHGRQASIPCATQNLSQQ 435
>gb|AFW85172.1| hypothetical protein ZEAMMB73_007991 [Zea mays]
Length = 504
Score = 128 bits (321), Expect = 7e-27
Identities = 90/374 (24%), Positives = 168/374 (44%), Gaps = 11/374 (2%)
Frame = -2
Query: 1842 FQHLSTLRTGTTKLKIKVRLTRMWESIHWNNNNEVLSRDFLLLDAKGTHVHARLESKDFK 1663
F ++ L +T I+VR+ R WE N+ + + +L D +GT +HA +++
Sbjct: 3 FTPIAELDPRSTNAAIRVRIIRKWEFRGATNDGPLRHVNLILADEQGTTIHAEIQAALVA 62
Query: 1662 EFDKFAKGALLEEGNIYVIERFDVVLATTY-RPVVHPFVIKFKPETLIQLADEGGAEIAR 1486
+ K +L++ +Y ++RF V + Y +PV + +I+F T ++ + R
Sbjct: 63 D-----KDSLIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQAKVVKDPPPNFPR 117
Query: 1485 YNFNFIEFNAVPEKVKQKTLLSDVIGVLKKFGSTKQ---KSGSVLKEIVLMDQKRAEVTI 1315
Y + F + + V KT L DV+G+L + GS + +++++I L D A +
Sbjct: 118 YAYKLTSFEDISDNVDNKTYLIDVLGILTEIGSLHHVGYNNSNIIRDIFLKDINNASTKV 177
Query: 1314 TLWGDLVGSIPDSLLTQQN----VIIIATSLAARDYQDKITLSSVSGTKIYVNLD-THAV 1150
TLWG S + +N V+I+ A+ ++ + LS+ + Y N D A
Sbjct: 178 TLWGHQASSFSVDNICDENDNKPVVILFVGCLAKRFKGEAYLSATAACTWYFNPDIPEAQ 237
Query: 1149 TEYKRRIEAANILVELEAPPQNLSEEALLSDKRVTIGELKDMGRDQSYKGSSYTCNAIID 970
Y + + ++ +A + L + + TI EL + D + + C I
Sbjct: 238 MYYNKLLNTKLHMIRPQATAEELQASQTPNIEDKTIEELLQLDPDM-FPEQGFRCTVTIS 296
Query: 969 K-VYSSNWYYNCCKRCMKTIAHTDPNTHCRKCR-VDSEKKYKLRFAVNDFSDITTFVAFN 796
+ V + W++ C +C K+ + T C C ++E +YKL F D + F F+
Sbjct: 297 RLVQNGRWWFPSCIKCNKSSSQTSTGYQCTSCNGTETEFRYKLSFIATDGTSEAEFFCFD 356
Query: 795 KHAEHLIKKSVEEL 754
A ++ KS + L
Sbjct: 357 TIARRIVGKSCQTL 370