BLASTX nr result
ID: Coptis23_contig00003365
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00003365
(2080 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-lik... 911 0.0
gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo] 902 0.0
ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-pro... 899 0.0
ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-lik... 899 0.0
ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|2... 894 0.0
>ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-like [Vitis vinifera]
Length = 583
Score = 911 bits (2354), Expect = 0.0
Identities = 433/568 (76%), Positives = 474/568 (83%), Gaps = 1/568 (0%)
Frame = +1
Query: 190 ETYDDNGDDSXXXXXXXXSKTSAPKIDDTTYALANLSEN-KPIDPSQRVITYNPTYDQLW 366
+ D++ DS SK+SAPK+DDTT ALA + N KPIDP Q V+ +NPTYDQLW
Sbjct: 23 QNLDNSSPDSSPTRIALPSKSSAPKVDDTTLALAIANTNDKPIDPIQHVVPFNPTYDQLW 82
Query: 367 APIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDN 546
APIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPF+FDEQYNTFHKYGYAADPSA +G+N
Sbjct: 83 APIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFIFDEQYNTFHKYGYAADPSASAGNN 142
Query: 547 MVGDMEKMKENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEE 726
VGD+E +++NDGISVYNI Q + + +ED D+E V NPAT+
Sbjct: 143 YVGDLEALEKNDGISVYNIPQHEQKKRKIEKKK-----ESESEENEDVDVEEVQNPATDT 197
Query: 727 WLKKNRKSPWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVDKSMFHGK 906
WL KN+KSPW+GKKEGL ELT V DKS FHGK
Sbjct: 198 WLLKNKKSPWAGKKEGLQTELTEEQKKYAEEYAKKKGEEKGAAEKGEF--VTDKSTFHGK 255
Query: 907 EENDYQGRSWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMD 1086
EE DYQGRSWIA PKDAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD
Sbjct: 256 EERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMD 315
Query: 1087 SKVKIWDVFNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSF 1266
+KVKIWDVFNSGKCMRTYMGH KAVRDISF NDGTKFL+AGYDKNIKYWDTETGQVIS+F
Sbjct: 316 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIKYWDTETGQVISTF 375
Query: 1267 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDN 1446
STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+N
Sbjct: 376 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNN 435
Query: 1447 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYST 1626
RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP+ISLHPN+NWLAAQSLDNQILIYST
Sbjct: 436 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 495
Query: 1627 RDRFQLNKKKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHD 1806
R+RFQLNKKKRFAGHI AGYACQVNFSPDG++VMSGDGEG CW+W+WK+CKV R L+CH+
Sbjct: 496 RERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 555
Query: 1807 GVCIGCEWHPLEQSKVATCGWDGMIHYW 1890
GVCIGCEWHPLEQSKVATCGWDG+I YW
Sbjct: 556 GVCIGCEWHPLEQSKVATCGWDGLIKYW 583
>gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]
Length = 581
Score = 902 bits (2331), Expect = 0.0
Identities = 432/585 (73%), Positives = 477/585 (81%), Gaps = 15/585 (2%)
Frame = +1
Query: 184 LLETYDDNGDDSXXXXXXXXS-----------KTSAPKIDDTTYAL----ANLSENKPID 318
LL++Y D DD S KTSAPK+DDT AL AN + +KPID
Sbjct: 3 LLQSYTDQNDDDGSPKQLTSSPEASPPRLIPSKTSAPKVDDTMLALTVANANQTLSKPID 62
Query: 319 PSQRVITYNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTF 498
P+Q ++ +NPTYDQLWAPIYGP+HPYAKDGIAQGMRNHKLGFVENA+IEPF+FDEQYNTF
Sbjct: 63 PTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTF 122
Query: 499 HKYGYAADPSAMSGDNMVGDMEKMKENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDM 678
HKYGYAADPSA +G+N +GDME +++ND ISVYNI Q E+ DM
Sbjct: 123 HKYGYAADPSASAGNNYIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEM---SENEDM 179
Query: 679 DEDFDLEGVDNPATEEWLKKNRKSPWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXX 858
+E+ + VDNPA++ WL KNRKSPWSGKKEGL ELT
Sbjct: 180 EEEVNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEK 239
Query: 859 XXXXXXVVDKSMFHGKEENDYQGRSWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAI 1038
DKS FHGKEE DYQGRSWIA PKDAKA N+ CYIPKR +HTWSGHTKGVSAI
Sbjct: 240 GEV---TADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAI 296
Query: 1039 RFFPKHGHLLLSAGMDSKVKIWDVFNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDK 1218
RFFPKHGHL+LSAGMD+KVKIWDVFNSGKCMRTYMGH +AVRDISF NDG+KFL+AGYDK
Sbjct: 297 RFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDK 356
Query: 1219 NIKYWDTETGQVISSFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEY 1398
IKYWDTETGQVIS+FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN+GQITQEY
Sbjct: 357 KIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEY 416
Query: 1399 DQHLGAVNTITFVDDNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSN 1578
DQHLGAVNTITFVD+NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP+IS+HPN+N
Sbjct: 417 DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTN 476
Query: 1579 WLAAQSLDNQILIYSTRDRFQLNKKKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWY 1758
WLAAQSLDNQILIYSTR+RFQLNKKKRFAGHIVAGYACQVNFSPDG++VMSGDGEG CW+
Sbjct: 477 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 536
Query: 1759 WNWKTCKVSRKLRCHDGVCIGCEWHPLEQSKVATCGWDGMIHYWD 1893
W+WKTCKV R L+CH+GVCIGCEWHPLEQSKVATCGWDG+I YWD
Sbjct: 537 WDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 581
>ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing factor 17-like
[Cucumis sativus]
Length = 580
Score = 899 bits (2323), Expect = 0.0
Identities = 432/584 (73%), Positives = 477/584 (81%), Gaps = 15/584 (2%)
Frame = +1
Query: 184 LLETYDDNGDDSXXXXXXXXS-----------KTSAPKIDDTTYAL----ANLSENKPID 318
LL++Y D DD S KTSAPK+DDT AL AN + +KPID
Sbjct: 3 LLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKPID 62
Query: 319 PSQRVITYNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTF 498
P+Q ++ +NPTYDQLWAPIYGP+HPYAKDGIAQGMRNHKLGFVENA+IEPF+FDEQYNTF
Sbjct: 63 PTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTF 122
Query: 499 HKYGYAADPSAMSGDNMVGDMEKMKENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDM 678
HKYGYAADPSA +G+N +GDME +++ND ISVYNI Q E+ DM
Sbjct: 123 HKYGYAADPSASAGNNYIGDMEALEKNDAISVYNIPQHEQKKRKIEKKKKX---SENEDM 179
Query: 679 DEDFDLEGVDNPATEEWLKKNRKSPWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXX 858
+E+ + VDNPA++ WL KNRKSPWSGKKEGL ELT
Sbjct: 180 EEEVNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEK 239
Query: 859 XXXXXXVVDKSMFHGKEENDYQGRSWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAI 1038
DKS FHGKEE DYQGRSWIA PKDAKA N+ CYIPKR +HTWSGHTKGVSAI
Sbjct: 240 GEVTS---DKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAI 296
Query: 1039 RFFPKHGHLLLSAGMDSKVKIWDVFNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDK 1218
RFFPKHGHL+LSAGMD+KVKIWDVFNSGKCMRTYMGH +AVRDISF NDG+KFL+AGYDK
Sbjct: 297 RFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDK 356
Query: 1219 NIKYWDTETGQVISSFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEY 1398
IKYWDTETGQVIS+FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN+GQITQEY
Sbjct: 357 KIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEY 416
Query: 1399 DQHLGAVNTITFVDDNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSN 1578
DQHLGAVNTITFVD+NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP+IS+HPN+N
Sbjct: 417 DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTN 476
Query: 1579 WLAAQSLDNQILIYSTRDRFQLNKKKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWY 1758
WLAAQSLDNQILIYSTR+RFQLNKKKRFAGHIVAGYACQVNFSPDG++VMSGDGEG CW+
Sbjct: 477 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 536
Query: 1759 WNWKTCKVSRKLRCHDGVCIGCEWHPLEQSKVATCGWDGMIHYW 1890
W+WKTCKV R L+CH+GVCIGCEWHPLEQSKVATCGWDG+I YW
Sbjct: 537 WDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 580
>ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-like [Cucumis sativus]
Length = 580
Score = 899 bits (2323), Expect = 0.0
Identities = 431/584 (73%), Positives = 476/584 (81%), Gaps = 15/584 (2%)
Frame = +1
Query: 184 LLETYDDNGDDSXXXXXXXXS-----------KTSAPKIDDTTYAL----ANLSENKPID 318
LL++Y D DD S KTSAPK+DDT AL AN + +KPID
Sbjct: 3 LLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKPID 62
Query: 319 PSQRVITYNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTF 498
P+Q ++ +NPTYDQLWAPIYGP+HPYAKDGIAQGMRNHKLGFVENA+IEPF+FDEQYNTF
Sbjct: 63 PTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTF 122
Query: 499 HKYGYAADPSAMSGDNMVGDMEKMKENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDM 678
HKYGYAADPSA +G+N +GDME +++ND ISVYNI Q E+ DM
Sbjct: 123 HKYGYAADPSASAGNNYIGDMEALEKNDAISVYNIPQHEQKKRKIEKKKEM---SENEDM 179
Query: 679 DEDFDLEGVDNPATEEWLKKNRKSPWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXX 858
+E+ + VDNPA++ WL KNRKSPWSGKKEGL ELT
Sbjct: 180 EEEVNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEK 239
Query: 859 XXXXXXVVDKSMFHGKEENDYQGRSWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAI 1038
DKS FHGKEE DYQGRSWIA PKDAKA N+ CYIPKR +HTWSGHTKGVSAI
Sbjct: 240 GEVTS---DKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAI 296
Query: 1039 RFFPKHGHLLLSAGMDSKVKIWDVFNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDK 1218
RFFPKHGHL+LSAGMD+KVKIWDVFNSGKCMRTYMGH +AVRDISF NDG+KFL+AGYDK
Sbjct: 297 RFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDK 356
Query: 1219 NIKYWDTETGQVISSFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEY 1398
IKYWDTETGQVIS+FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN+GQITQEY
Sbjct: 357 KIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEY 416
Query: 1399 DQHLGAVNTITFVDDNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSN 1578
DQHLGAVNTITFVD+NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP+IS+HPN+N
Sbjct: 417 DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTN 476
Query: 1579 WLAAQSLDNQILIYSTRDRFQLNKKKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWY 1758
WLAAQSLDNQILIYSTR+RFQLNKKKRFAGHIVAGYACQVNFSPDG++VMSGDGEG CW+
Sbjct: 477 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 536
Query: 1759 WNWKTCKVSRKLRCHDGVCIGCEWHPLEQSKVATCGWDGMIHYW 1890
W+WKTCKV R L+CH+GVCIGCEWHPLEQSKVATCGWDG+I YW
Sbjct: 537 WDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 580
>ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|222852429|gb|EEE89976.1|
predicted protein [Populus trichocarpa]
Length = 581
Score = 894 bits (2310), Expect = 0.0
Identities = 425/566 (75%), Positives = 471/566 (83%), Gaps = 2/566 (0%)
Frame = +1
Query: 202 DNGDDSXXXXXXXXSKTSAPKIDDTTYAL--ANLSENKPIDPSQRVITYNPTYDQLWAPI 375
++ DS SK++APK+DDT AL AN + +KPIDP Q + +NPTYDQLWAP+
Sbjct: 21 NSSPDSSSPPRLLPSKSAAPKVDDTMLALTVANQTLSKPIDPVQHAVAFNPTYDQLWAPV 80
Query: 376 YGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVG 555
GPAHPYAKDGIAQGMRNHKLGFVENAAI+ F+FDEQYNTFHKYGYAADPSA +G+N VG
Sbjct: 81 LGPAHPYAKDGIAQGMRNHKLGFVENAAIDSFVFDEQYNTFHKYGYAADPSASAGNNYVG 140
Query: 556 DMEKMKENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLK 735
D++ +++ +GISVYNI Q +E GD D+ D E V+NPAT+ WL
Sbjct: 141 DLDTLEKTNGISVYNIPQHEQKKRKIEKKREVT--EEEGDGDDVMDKEEVENPATDAWLM 198
Query: 736 KNRKSPWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVDKSMFHGKEEN 915
KNRKSPW+GKKEGL EL+ V DK+ FHGKEE
Sbjct: 199 KNRKSPWAGKKEGLQTELSEEQQKYAEEHARKKAEKAGGEKGEV---VADKTTFHGKEER 255
Query: 916 DYQGRSWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKV 1095
DYQGRSW+A PKDAKA+N+ CYIPKR +HTWSGHTKGVSAIRFFPK+GHL+LSAGMD+KV
Sbjct: 256 DYQGRSWLAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 315
Query: 1096 KIWDVFNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTG 1275
KIWDVFNSGKCMRTYMGH KAVRDISF NDGTKFL+A YDKNIKYWDTETGQVIS+FSTG
Sbjct: 316 KIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVISTFSTG 375
Query: 1276 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRF 1455
KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVD+NRRF
Sbjct: 376 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDNNRRF 435
Query: 1456 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDR 1635
VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTR+R
Sbjct: 436 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRER 495
Query: 1636 FQLNKKKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVC 1815
FQLNKKKRFAGHIVAGYACQVNFSPDG++VMSGDGEG CW+W+WK+CKV R L+CH+GVC
Sbjct: 496 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC 555
Query: 1816 IGCEWHPLEQSKVATCGWDGMIHYWD 1893
IGCEWHPLEQSKVATCGWDG+I YWD
Sbjct: 556 IGCEWHPLEQSKVATCGWDGLIKYWD 581