BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003362
         (731 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532248.1| pentatricopeptide repeat-containing protein,...   358   8e-97
ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containi...   357   1e-96
ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containi...   345   7e-93
ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|2...   331   8e-89
ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containi...   326   3e-87

>ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528066|gb|EEF30142.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 521

 Score =  358 bits (918), Expect = 8e-97
 Identities = 168/243 (69%), Positives = 204/243 (83%)
 Frame = -1

Query: 731 FHEGLFLNLMTHFSKSCLHEKIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREIDLARN 552
           FHE +FLNLM HF KS LHE+++EM +AIQPIVRE+PSLKAISTCLN+L+E+++IDLA+ 
Sbjct: 125 FHENIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQIDLAQK 184

Query: 551 VLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGG 372
            LL + E    +PNTC+FNILVK+HCK GDL+SA EV++EMKK  +SYPN+ITYSTL+ G
Sbjct: 185 CLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDG 244

Query: 371 LCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECQP 192
           LC  GRL+EAI++FEEMVSKD+ILPD LTY++LI GFC GGK DRARKIM+FMR N C P
Sbjct: 245 LCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDP 304

Query: 191 NIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLEIDAVCYTTLISCLCKGGRIDEAINML 12
           N+FNYS LMNG+CKE R EEAKEVFDEM+ S L+ D V YTTLI+C C  GRIDEA+ +L
Sbjct: 305 NVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELL 364

Query: 11  KEM 3
           KEM
Sbjct: 365 KEM 367



 Score = 59.3 bits (142), Expect = 8e-07
 Identities = 44/173 (25%), Positives = 79/173 (45%)
 Frame = -1

Query: 626 RPSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAF 447
           +P     +T +N       ID A  +L E+ E    K +   FN+L+K  C++G  D A 
Sbjct: 338 KPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMK-CKADAVTFNVLLKGLCREGRFDEAL 396

Query: 446 EVVNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILIN 267
            ++  +   E  Y N  +Y  ++  LC  G L+++  +   M+S+   +P   T N L+ 
Sbjct: 397 RMLENLAY-EGVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSRG-FVPHYATSNELLV 454

Query: 266 GFCRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 108
             C  G VD A   +  + +    P   +++ L+   C+E +     E+ DE+
Sbjct: 455 CLCEAGMVDNAVTALFGLTQMGFTPEPKSWAHLIEYICRERKLLFVFELVDEL 507


>ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  357 bits (917), Expect = 1e-96
 Identities = 169/243 (69%), Positives = 203/243 (83%)
 Frame = -1

Query: 731 FHEGLFLNLMTHFSKSCLHEKIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREIDLARN 552
           FHEG+FLNLM HFSK  LHE++VEM  AI+PIVRE+PSLKAISTCLNLL+E+ ++DL R 
Sbjct: 126 FHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRK 185

Query: 551 VLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGG 372
            LL  K+  + +PNTC+FNILVK+HCK GD+DSAFEVV EMKK   SYPNLITYSTL+ G
Sbjct: 186 FLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLING 245

Query: 371 LCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECQP 192
           LC +GRL+EAI++FEEMVSKD+ILPD LTYN LINGFC G KVDRA KIM+FM+KN C P
Sbjct: 246 LCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNP 305

Query: 191 NIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLEIDAVCYTTLISCLCKGGRIDEAINML 12
           N+FNYS+LMNG+CKE R EEAKEVFDEM+   L+ D V YTTLI+  C+ GR+DEA+ +L
Sbjct: 306 NVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELL 365

Query: 11  KEM 3
           K+M
Sbjct: 366 KDM 368


>ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
           gi|449497032|ref|XP_004160294.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  345 bits (884), Expect = 7e-93
 Identities = 156/242 (64%), Positives = 202/242 (83%)
 Frame = -1

Query: 728 HEGLFLNLMTHFSKSCLHEKIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREIDLARNV 549
           HEG+FLNLM HFSKS +HE++++M +AI+ IVRE+PSLKAISTCLNLL+E+  +DLAR +
Sbjct: 117 HEGIFLNLMKHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVDLARKL 176

Query: 548 LLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGGL 369
           L+  + + + +PNTC+FNILVK+HC+ GDL +AFEVV EMK    SYPNL+TYSTL+GGL
Sbjct: 177 LVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGL 236

Query: 368 CDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECQPN 189
           C+ G+L+EAI+ FEEMVSKD ILPD LTYNILINGFC+ GKVDRAR I++FM+ N C PN
Sbjct: 237 CENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPN 296

Query: 188 IFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLEIDAVCYTTLISCLCKGGRIDEAINMLK 9
           +FNYS LMNGYCKE R +EAKEVF+E++   ++ D + YTTLI+CLC+ GR+DEA  +L+
Sbjct: 297 VFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQ 356

Query: 8   EM 3
           +M
Sbjct: 357 QM 358



 Score =  117 bits (292), Expect = 3e-24
 Identities = 63/204 (30%), Positives = 112/204 (54%)
 Frame = -1

Query: 623 PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFE 444
           P+L   ST +  L E  ++  A     E+  + +  P+   +NIL+   C++G +D A  
Sbjct: 224 PNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRART 283

Query: 443 VVNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILING 264
           ++  MK    S PN+  YS LM G C  GRLQEA +VF E+ S   + PDT++Y  LIN 
Sbjct: 284 ILEFMKSNGCS-PNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLG-MKPDTISYTTLINC 341

Query: 263 FCRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLEID 84
            CR G+VD A +++  M+  +C+ +   ++ ++ G C+E R++EA ++  ++      ++
Sbjct: 342 LCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLN 401

Query: 83  AVCYTTLISCLCKGGRIDEAINML 12
              Y  +++ L + G + +A  +L
Sbjct: 402 KGSYRIVLNFLTQKGELRKATELL 425



 Score = 93.6 bits (231), Expect = 4e-17
 Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 4/228 (1%)
 Frame = -1

Query: 683 CLHEKIVEMLFAIQPIVRER---PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKP 513
           C + K+ E +   + +V +    P     +  +N   +  ++D AR +L E  + +   P
Sbjct: 237 CENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTIL-EFMKSNGCSP 295

Query: 512 NTCVFNILVKYHCKKGDLDSAFEVVNEMKK-GEKSYPNLITYSTLMGGLCDAGRLQEAIQ 336
           N   +++L+  +CK+G L  A EV NE+K  G K  P+ I+Y+TL+  LC  GR+ EA +
Sbjct: 296 NVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMK--PDTISYTTLINCLCRTGRVDEATE 353

Query: 335 VFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGY 156
           + ++M  KD    DT+T+N+++ G CR G+ D A  ++  +       N  +Y  ++N  
Sbjct: 354 LLQQMKDKD-CRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFL 412

Query: 155 CKEDRYEEAKEVFDEMRRSRLEIDAVCYTTLISCLCKGGRIDEAINML 12
            ++    +A E+   M             TL+  LC  G + +A+  L
Sbjct: 413 TQKGELRKATELLGLMLNRGFVPHHATSNTLLLLLCNNGMVKDAVESL 460


>ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|222842808|gb|EEE80355.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  331 bits (849), Expect = 8e-89
 Identities = 159/243 (65%), Positives = 197/243 (81%)
 Frame = -1

Query: 731 FHEGLFLNLMTHFSKSCLHEKIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREIDLARN 552
           FHE LFLNLM +F+KS   E++VEM   IQPIVRE+PSLKAISTCLNLL+E++++DL R 
Sbjct: 116 FHESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLLVESKQVDLLRG 175

Query: 551 VLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGG 372
            LL+L +    KPNTC+FNI +KYHCK GDL+SAF VV EMKK   SYPNLITYSTLM G
Sbjct: 176 FLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDG 235

Query: 371 LCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECQP 192
           LC++GRL+EAI++FEEMVSKD+ILPD LTYN+LINGF   GKVDRA+KIM+FM+ N C P
Sbjct: 236 LCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSP 295

Query: 191 NIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLEIDAVCYTTLISCLCKGGRIDEAINML 12
           N+FNYS+LM+G+CKE R EEA + F+EM+   L+ D V YT LI+  C+ GRIDEA+ +L
Sbjct: 296 NVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALL 355

Query: 11  KEM 3
           +EM
Sbjct: 356 EEM 358



 Score = 72.4 bits (176), Expect = 9e-11
 Identities = 41/172 (23%), Positives = 85/172 (49%)
 Frame = -1

Query: 518 KPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAI 339
           K +T  + IL+ Y C+ G +D A  ++ EMK+  K   +++T + L+ G C  GR +EA+
Sbjct: 329 KQDTVGYTILINYFCRFGRIDEAMALLEEMKE-TKCKADIVTVNVLLRGFCGEGRTEEAL 387

Query: 338 QVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNG 159
            +   + S + I  +  +Y I++N  C+ G +D+A +++         P+    + L+ G
Sbjct: 388 GMLNRL-SSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVG 446

Query: 158 YCKEDRYEEAKEVFDEMRRSRLEIDAVCYTTLISCLCKGGRIDEAINMLKEM 3
            CK    ++A      +     + +   +  L+  +C+  ++  A  +L E+
Sbjct: 447 LCKAGMADDAVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDEL 498



 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 43/169 (25%), Positives = 81/169 (47%)
 Frame = -1

Query: 596 LNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGE 417
           +N       ID A  +L E+KE +  K +    N+L++  C +G  + A  ++N +   E
Sbjct: 339 INYFCRFGRIDEAMALLEEMKE-TKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSS-E 396

Query: 416 KSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDR 237
             Y N  +Y  ++  LC  G L +A+++    +S+   +P   T N L+ G C+ G  D 
Sbjct: 397 GIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRG-FVPHHATSNELLVGLCKAGMADD 455

Query: 236 ARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLE 90
           A   +  + +   +P   +++ L+   C+E +   A E+ DE+  +  E
Sbjct: 456 AVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDELTANECE 504


>ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  326 bits (835), Expect = 3e-87
 Identities = 153/243 (62%), Positives = 193/243 (79%)
 Frame = -1

Query: 731 FHEGLFLNLMTHFSKSCLHEKIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREIDLARN 552
           FHEG+F+NLM HFSKS LHEK++   F+IQPIVRE+PS KA+STCLNLL+++  +DLAR 
Sbjct: 159 FHEGIFVNLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNLLLDSNRVDLARK 218

Query: 551 VLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGG 372
           +LL  K     KPN CVFNILVKYHCK GDLDSAFE+V EM+  E SYPNL+TYSTLM G
Sbjct: 219 LLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDG 278

Query: 371 LCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECQP 192
           LC  GR++EA  +FEEMVS+D I+PD LTYN+LINGFCRGGK DRAR ++ FM+ N C P
Sbjct: 279 LCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYP 338

Query: 191 NIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLEIDAVCYTTLISCLCKGGRIDEAINML 12
           N++NYS+L++G CK  + E+AK V  E++ S L+ DAV YT+LI+ LC+ G+ DEAI +L
Sbjct: 339 NVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELL 398

Query: 11  KEM 3
           +EM
Sbjct: 399 EEM 401



 Score =  110 bits (274), Expect = 4e-22
 Identities = 60/204 (29%), Positives = 109/204 (53%)
 Frame = -1

Query: 623 PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFE 444
           P+L   ST ++ L     +  A ++  E+  R    P+   +N+L+   C+ G  D A  
Sbjct: 267 PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARN 326

Query: 443 VVNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILING 264
           V+  MK     YPN+  YS L+ GLC  G+L++A  V  E +    + PD +TY  LIN 
Sbjct: 327 VIQFMKSNG-CYPNVYNYSALVDGLCKVGKLEDAKGVLAE-IKGSGLKPDAVTYTSLINF 384

Query: 263 FCRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLEID 84
            CR GK D A ++++ M++N CQ +   ++ L+ G C+E ++EEA ++ +++ +  + ++
Sbjct: 385 LCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLN 444

Query: 83  AVCYTTLISCLCKGGRIDEAINML 12
              Y  +++ L +   +  A  +L
Sbjct: 445 KGSYRIVLNSLTQKCELKRAKELL 468



 Score = 79.7 bits (195), Expect = 6e-13
 Identities = 48/207 (23%), Positives = 105/207 (50%)
 Frame = -1

Query: 623 PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFE 444
           P++   S  ++ L +  +++ A+ VL E+K  S  KP+   +  L+ + C+ G  D A E
Sbjct: 338 PNVYNYSALVDGLCKVGKLEDAKGVLAEIKG-SGLKPDAVTYTSLINFLCRNGKSDEAIE 396

Query: 443 VVNEMKKGEKSYPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILING 264
           ++ EMK+      + +T++ L+GGLC  G+ +EA+ + E++  +   L +  +Y I++N 
Sbjct: 397 LLEEMKENG-CQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYL-NKGSYRIVLNS 454

Query: 263 FCRGGKVDRARKIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLEID 84
             +  ++ RA++++  M +   QP+    + L+   CK    ++A     ++     +  
Sbjct: 455 LTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPG 514

Query: 83  AVCYTTLISCLCKGGRIDEAINMLKEM 3
              +  LI  +C+  ++     +L E+
Sbjct: 515 LETWEVLIGLICRERKLLYVFELLDEL 541