BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003327
         (1651 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   171   7e-40
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...   166   2e-38
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   145   3e-32
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   145   4e-32
ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm...   137   6e-30

>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 398

 Score =  171 bits (432), Expect = 7e-40
 Identities = 130/432 (30%), Positives = 210/432 (48%), Gaps = 17/432 (3%)
 Frame = +2

Query: 269  ADVPDHVLELVVDRLCLPDLYRFGVVSKPCKSVCDPLQFS---------DHLPWLIVPFI 421
            + +P  ++E++   L +   Y +       ++VC   +FS           LPWL++P  
Sbjct: 6    SQLPPELIEIISKGLTIYSDYLYS------RAVCHAWRFSIPKTPNHLPPQLPWLMLPQS 59

Query: 422  NNINNCSTASSFAFDDTKDVGFFSLRDGKVYKAELPELSNR-RICGSFPGGWLMTVHENS 598
             + +N S  +           FFSL   K +   LPE+S R R CGS   GWLM + +  
Sbjct: 60   QSQSNQSRRA-----------FFSLSTNKFHFLNLPEVSYRKRHCGS-SHGWLMILDDTP 107

Query: 599  QVQLFNPLRSSSRVIHLPPLTNFPGVVDMIERKEDGVSSRFYMLSYKPENMIKPSTWVRD 778
             + L NPL  +   + LPPL++FP V+         +   + + +   E +      +RD
Sbjct: 108  TILLINPLTRAK--LSLPPLSSFPNVISF---NYSDIGREYALRNLLGERVTVSLRQMRD 162

Query: 779  IYIFKVAMSSSSVTQGA-IIMAIQSPISTLAYYRIGGDQQGWTLVTQTSGNGMHHDLTYY 955
             +I KV +SSS +     +++AI +    LAY R G   + W+LV   +      D+ + 
Sbjct: 163  SFIRKVVLSSSPLKDNNFVVIAILNQTDDLAYCRNG--DKSWSLVE--NARSFCEDVIFV 218

Query: 956  KGKFYAVHNTGYVVVVNGLGQVETPIPSTSIETVISSPPGKSGPQFYILESSDDLLVVQR 1135
             G FYAV+  G +V+ +    + +  P  S    + +P    G   Y++ S D+LL+V R
Sbjct: 219  NGMFYAVNKAGQIVICD----ISSDSPRVSF---METPRQAGGDMQYLVNSGDELLLVTR 271

Query: 1136 YVKRHRNTKVNNDGDPPHLFPH---ETVGFTVFKLEFGTPCRWVKIDNLGDRSLFLGYNS 1306
            Y+       +  + D P + PH    T+ F VF+L++  P +W+++  LGD++LF+G NS
Sbjct: 272  YLD------LEYEFDHPDMEPHLIYRTIRFEVFRLDWNGP-QWLRMSTLGDKALFIGENS 324

Query: 1307 SFSVPASKFTGCKPNSIYFTDNLWLWFYKRKFGGQDFGIFSLLDGRIEKF-LYPDD--DL 1477
            S S+ A+ F+GC  N IY+TD+     Y   FG  D GIF L D  IE    YP +    
Sbjct: 325  SLSLSATDFSGCMGNCIYYTDDYLDANYDGHFGDHDLGIFKLCDETIEPLPCYPRNFTSP 384

Query: 1478 VVMPSPIWFAPN 1513
            +    P+W +PN
Sbjct: 385  LQWSPPLWVSPN 396


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
            predicted protein [Populus trichocarpa]
          Length = 393

 Score =  166 bits (419), Expect = 2e-38
 Identities = 134/423 (31%), Positives = 203/423 (47%), Gaps = 10/423 (2%)
 Frame = +2

Query: 275  VPDHVLELVVDRLCL-PDLYRFGVVSKPCKSVCD--PLQFSDHLPWLIVPFINNINNCST 445
            +P  ++E++  ++ +  D   F  V    KS     P      LPWL++P      + S 
Sbjct: 8    LPPELIEIISKKITIYSDYLHFQAVCHAWKSSIPKTPNHLPPQLPWLLLP-----QSQSN 62

Query: 446  ASSFAFDDTKDVGFFSLRDGKVYKAELPELSNRRI-CGSFPGGWLMTVHENSQVQLFNPL 622
             SS+         FF+L   K +   LPE S+R+  CGS   GWL+ + ++  + + NPL
Sbjct: 63   QSSYR-------AFFNLSTYKFHSLNLPEASHRKKHCGS-SHGWLIILDDSPSILVINPL 114

Query: 623  RSSSRVIHLPPLTNFPGVVDMIERKEDGVSSRFYMLSYKPENMIKPSTWVRDIYIFKVAM 802
              + R IHLP +++FP VV         V   + +++ + E        +RD +I KV M
Sbjct: 115  --TRRKIHLPAISSFPNVVSF---DYANVGREYLLVNPQGERNTASLRQMRDGFIKKVVM 169

Query: 803  SSSSVTQGA---IIMAIQSPISTLAYYRIGGDQQGWTLVTQTSGNGMHHDLTYYKGKFYA 973
            SSS + +     + MAI      LAY + G   + W +V  +       D+ Y+ G FYA
Sbjct: 170  SSSPLEKKGDFFVAMAILCSTGDLAYCKNG--DECWNIVENS--RSFSEDVIYFNGLFYA 225

Query: 974  VHNTGYVVVVNGLGQVETPIPSTSIETVISSPPGKSGPQFYILESSDDLLVVQRYVKRHR 1153
            V+  G +VV +  G      P  S    I +P    G   Y++ S D LL+V RY+    
Sbjct: 226  VNKAGQIVVCDVNGNS----PKVSF---IETPRQIGGDMQYLVSSGDGLLLVTRYL---- 274

Query: 1154 NTKVNNDGDPPHLFPHETVGFTVFKLEFGTPCRWVKIDNLGDRSLFLGYNSSFSVPASKF 1333
            +  V  D     +F ++T  F VFKL+   P RW ++ +LGD  LF+G NSS ++ AS  
Sbjct: 275  DLDVEFD-----IFIYKTARFEVFKLDLNGP-RWERVTSLGDMMLFIGENSSLALSASGL 328

Query: 1334 TGCKPNSIYFTDNLWLWFYKRKFGGQDFGIFSLLDGRIEKF-LYPDDDL--VVMPSPIWF 1504
            +GC  + IY+TD+     Y    G  D GIF L DG IE    YP +    +  P P+W 
Sbjct: 329  SGCMGDCIYYTDDYSANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLWI 388

Query: 1505 APN 1513
            +PN
Sbjct: 389  SPN 391


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  145 bits (366), Expect = 3e-32
 Identities = 113/345 (32%), Positives = 164/345 (47%), Gaps = 2/345 (0%)
 Frame = +2

Query: 485  FFSLRDGKVYKAELPELSNRRICGSFPGGWLMTVHENSQVQLFNPLRSSSRVIHLPPLTN 664
            FFSL   K +  +LPE S+RR       GWL+ + E  ++ L NPL  S   +HLPPL+ 
Sbjct: 67   FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSK--VHLPPLST 124

Query: 665  FPGVVDMIERKEDGVSSRFYMLSYKPENMIKPSTWVRDIYIFKVAMSSSSVTQGAII-MA 841
            FP VV         V   + + +   +   +    +RD +I K  +SSS       I + 
Sbjct: 125  FPNVVRF---NFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPANGSDFIAVV 181

Query: 842  IQSPISTLAYYRIGGDQQGWTLVTQTSGNGMHHDLTYYKGKFYAVHNTGYVVVVNGLGQV 1021
            I +    LA  R   D   WT +          D+ +++G FYAV+  G + V +  G  
Sbjct: 182  ILNQTGDLALCRKSDDS--WTFLEDAQSYA--EDVIFHRGLFYAVNKYGSIAVCDVSG-- 235

Query: 1022 ETPIPSTSIETVISSPPGKSGPQFYILESSDDLLVVQRYVKRHRNTKVNNDGDPPHL-FP 1198
                 S+   ++I  P    G   Y++ES ++LL+V RY+       +  D +P      
Sbjct: 236  -----SSPRVSIIEMPQQFGGDLQYLVESGEELLLVTRYLD------LTYDVEPDQTSLI 284

Query: 1199 HETVGFTVFKLEFGTPCRWVKIDNLGDRSLFLGYNSSFSVPASKFTGCKPNSIYFTDNLW 1378
            + T  F V +L+   P RW  + +LGDR+LFLG N S S+ +  F GCK N IY+TD+  
Sbjct: 285  YRTTRFQVCRLDLKAP-RWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYS 343

Query: 1379 LWFYKRKFGGQDFGIFSLLDGRIEKFLYPDDDLVVMPSPIWFAPN 1513
               Y    G QD GIF+L DG IE  L      +  P P+W  PN
Sbjct: 344  EDNYDGIGGEQDLGIFNLEDGSIEP-LPCSHFRIRWPPPLWVTPN 387


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  145 bits (365), Expect = 4e-32
 Identities = 113/344 (32%), Positives = 165/344 (47%), Gaps = 1/344 (0%)
 Frame = +2

Query: 485  FFSLRDGKVYKAELPELSNRRICGSFPGGWLMTVHENSQVQLFNPLRSSSRVIHLPPLTN 664
            FFSL   K +  +LPE S+RR       GWL+ + E  ++ L NPL  S   +HLPPL+ 
Sbjct: 67   FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSK--VHLPPLST 124

Query: 665  FPGVVDMIERKEDGVSSRFYMLSYKPENMIKPSTWVRDIYIFKVAMSSSSVTQGAII-MA 841
            FP VV         V   + + +   +   +    +RD +I K  +SSS       I + 
Sbjct: 125  FPNVVRF---NFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPANGSDFIAVV 181

Query: 842  IQSPISTLAYYRIGGDQQGWTLVTQTSGNGMHHDLTYYKGKFYAVHNTGYVVVVNGLGQV 1021
            I +    LA  R   D   WT +          D+ +++G FYAV+  G + V +  G  
Sbjct: 182  ILNQTGDLALCRKSDDS--WTFLEDAQSYS--EDVIFHRGLFYAVNKYGSIAVCDVSG-- 235

Query: 1022 ETPIPSTSIETVISSPPGKSGPQFYILESSDDLLVVQRYVKRHRNTKVNNDGDPPHLFPH 1201
                 S+   ++I  P    G   Y++ES ++LL+V RY+    +   + + D   L  +
Sbjct: 236  -----SSPRVSIIEMPQQFGGDLQYLVESGEELLLVTRYL----DLTYDVEXDQTSLI-Y 285

Query: 1202 ETVGFTVFKLEFGTPCRWVKIDNLGDRSLFLGYNSSFSVPASKFTGCKPNSIYFTDNLWL 1381
             T  F V +L+   P RW  + +LGDR+LFLG N S S+ +  F GCK N IY+TD+   
Sbjct: 286  RTTRFQVCRLDSKAP-RWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSE 344

Query: 1382 WFYKRKFGGQDFGIFSLLDGRIEKFLYPDDDLVVMPSPIWFAPN 1513
              Y    G QD GIF+L DG IE  L      +  P P+W  PN
Sbjct: 345  DNYDGIGGEQDLGIFNLEDGSIEP-LPCSHFRIRWPPPLWVTPN 387


>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
            gi|223551309|gb|EEF52795.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 406

 Score =  137 bits (346), Expect = 6e-30
 Identities = 114/419 (27%), Positives = 184/419 (43%), Gaps = 33/419 (7%)
 Frame = +2

Query: 356  CKSVCDPLQFSDH-----LPWLIVPFINNINNCSTASSFAFDDTKDVGFFSLRDGKVYKA 520
            CKS    +    H     LPWL++P+  N  N               GF++L DGK Y  
Sbjct: 32   CKSWWSAIPKKPHDLLCQLPWLLLPYHKNNPNHR-------------GFYNLADGKTYHL 78

Query: 521  ELPELSNRRICGSFPGGWLMTVHENSQVQLFNPLRSSSRVIHLPPLTNFPGV-VDMIERK 697
            ELPE   +R CGS   GWL+ V +   + L NPL  +   I LP L+ FP    +++   
Sbjct: 79   ELPETIEKRCCGS-SHGWLVMVEDTPSIFLLNPLTKAR--IELPSLSTFPYFPTEVVYEN 135

Query: 698  EDGVSSRFYMLSYKPENMIKPSTWVRDIYIFKVAMSSSSVTQGAIIMAIQSPIST---LA 868
               ++  F           K    +R+ YI K  +S    T    +MAI   I++   +A
Sbjct: 136  SRNINEYFNT---------KAKLRIRETYIRKAIVSEDPSTGNFAVMAIYKTINSTENIA 186

Query: 869  YYRIGGDQQGWTLVTQTSGNGMHHDLTYYKGKFYAVHNTGYVVVVNGLGQVETPIPSTSI 1048
            + + G     W  + +TS    + D+ +++GKFYAV + G V +        T I   S+
Sbjct: 187  FCKSG--DATWFTIQETSQKIHYQDVMFHRGKFYAVDDKGRVSICI------TDINPPSV 238

Query: 1049 ETVISSPPGK---SGPQFYILESSDDLLVVQRYVKRHRNTKVNNDGDPPHLFPHETVGFT 1219
              V   PP        Q+Y+    +DL++  R+ +++R +           + ++T  F 
Sbjct: 239  IQVADPPPVPPLMGYKQWYLASLDEDLILAGRF-RKYRGSG----------YEYQTHKFM 287

Query: 1220 VFKLEFGTPCRWVKIDNLGDRSLFLGYNSSFSVPASKFTGCKPNSIYFTDNLWLWFYKRK 1399
            V+KL+  +   W+++D LGD   FLG+N   S+    +     N IYFTD+ ++      
Sbjct: 288  VYKLD-ASSSNWLELDGLGDMLSFLGWNCFHSISTQNYRNYSGNCIYFTDDKFIVGSDFP 346

Query: 1400 FGGQDFGIFSLLDGRIEK--------------FLY-------PDDDLVVMPSPIWFAPN 1513
            + G D+GIF+L D  +++              F+Y        D    ++P PIW   N
Sbjct: 347  WEGHDYGIFNLDDKSVQRLGLPSYPIKLPILPFIYGYERSLKRDRSSFILPPPIWVTIN 405