BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003313
         (2627 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002866412.1| hypothetical protein ARALYDRAFT_919345 [Arab...   297   1e-77
ref|NP_200914.2| histone deacetylase 5 [Arabidopsis thaliana] gi...   285   6e-74
ref|NP_001060205.1| Os07g0602200 [Oryza sativa Japonica Group] g...   283   2e-73
ref|NP_200915.2| histone deacetylase 18 [Arabidopsis thaliana] g...   283   2e-73
gb|EEC82400.1| hypothetical protein OsI_26768 [Oryza sativa Indi...   283   2e-73

>ref|XP_002866412.1| hypothetical protein ARALYDRAFT_919345 [Arabidopsis lyrata subsp.
           lyrata] gi|297312247|gb|EFH42671.1| hypothetical protein
           ARALYDRAFT_919345 [Arabidopsis lyrata subsp. lyrata]
          Length = 660

 Score =  297 bits (760), Expect = 1e-77
 Identities = 141/269 (52%), Positives = 194/269 (72%), Gaps = 12/269 (4%)
 Frame = +3

Query: 3   ICEAVARGEVQSAVALVRPPGHHAESDRARGFCIFNNNAIAATHLLES--DLGINKIMML 176
           + E VA GE+    A+VRPPGHHAE+D A GFC+FNN A+AA++LL    DLG+ KI+++
Sbjct: 136 VAEKVAEGELDCGYAIVRPPGHHAEADEAMGFCLFNNIAVAASYLLNQRPDLGVKKILIV 195

Query: 177 DWDIHHGNGIQKMFWKDPRVLYLSLHRYDEATFYPCSEEANYDMIGEGPGEGFNINVPFS 356
           DWD+HHGNG QKMFW+DPRVL+ S+HR++  +FYP  ++ +Y+M+GEGPGEGFNINVP+ 
Sbjct: 196 DWDVHHGNGTQKMFWEDPRVLFFSVHRHEYGSFYPAGDDGDYNMVGEGPGEGFNINVPWD 255

Query: 357 KRSGCDDVNYLAVWEHVVLPVALEYNPDIILISAGFDAATDDPVGLTYRITPQCFARLLE 536
            +  C D +YLA W+H+++PVA E+NPDIIL+SAGFDAA  DP+G   R+TP  ++ +L+
Sbjct: 256 -QGRCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLG-GCRVTPYAYSVMLK 313

Query: 537 KLMGFARGKIVMTLEGGYDPDSLANCVLSCVKTLLGDKKNYVDLDLVIPEDTKHLIKLVR 716
           KLM FA GKIVM LEGGY+ DS+A   L+CV+ LLGDK+ +   +    E T  +I+ VR
Sbjct: 314 KLMEFAHGKIVMALEGGYNLDSIAKSSLACVQVLLGDKQIHGSSEAYPFESTWRVIQAVR 373

Query: 717 GALCQFWDTF----------KKTPPSLIV 773
             LC +W +           +KTP  +I+
Sbjct: 374 KRLCAYWPSLADELSWKLINQKTPTPIIL 402


>ref|NP_200914.2| histone deacetylase 5 [Arabidopsis thaliana]
           gi|75247631|sp|Q8RX28.1|HDA5_ARATH RecName: Full=Histone
           deacetylase 5 gi|20259320|gb|AAM13986.1| putative
           histone deacetylase [Arabidopsis thaliana]
           gi|21539579|gb|AAM53342.1| histone deacetylase-like
           protein [Arabidopsis thaliana]
           gi|23197730|gb|AAN15392.1| histone deacetylase-like
           protein [Arabidopsis thaliana]
           gi|332010034|gb|AED97417.1| histone deacetylase 5
           [Arabidopsis thaliana]
          Length = 660

 Score =  285 bits (728), Expect = 6e-74
 Identities = 137/269 (50%), Positives = 190/269 (70%), Gaps = 12/269 (4%)
 Frame = +3

Query: 3   ICEAVARGEVQSAVALVRPPGHHAESDRARGFCIFNNNAIAATHLLES--DLGINKIMML 176
           + E VA GE+    A+VRPPGHHAE+D A GFC+FNN A+AA+ LL    DLG+ KI+++
Sbjct: 136 LAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIV 195

Query: 177 DWDIHHGNGIQKMFWKDPRVLYLSLHRYDEATFYPCSEEANYDMIGEGPGEGFNINVPFS 356
           DWD+HHGNG QKMFWKDPRVL+ S+HR++   FYP  ++ +Y+M+GEGPGEGFNINVP+ 
Sbjct: 196 DWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWD 255

Query: 357 KRSGCDDVNYLAVWEHVVLPVALEYNPDIILISAGFDAATDDPVGLTYRITPQCFARLLE 536
            +  C D +YLA W+H+++PVA E+NPD+I +SAGFDAA +DP+G    +TP  ++ +L+
Sbjct: 256 -QGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLG-GCCVTPYGYSVMLK 313

Query: 537 KLMGFARGKIVMTLEGGYDPDSLANCVLSCVKTLLGDKKNYVDLDLVIPEDTKHLIKLVR 716
           KLM FA+GKIV+ LEGGY+ DS+A   L+CV+ LL DK+     +    E T  +I+ VR
Sbjct: 314 KLMEFAQGKIVLALEGGYNLDSIAKSSLACVQVLLEDKQIQGPPEAYPFESTWRVIQAVR 373

Query: 717 GALCQFWDTF----------KKTPPSLIV 773
             LC +W +           +KTP  +I+
Sbjct: 374 KRLCTYWPSLADELSWKLINQKTPTPIIL 402


>ref|NP_001060205.1| Os07g0602200 [Oryza sativa Japonica Group]
           gi|113611741|dbj|BAF22119.1| Os07g0602200 [Oryza sativa
           Japonica Group] gi|222637409|gb|EEE67541.1| hypothetical
           protein OsJ_25020 [Oryza sativa Japonica Group]
          Length = 695

 Score =  283 bits (724), Expect = 2e-73
 Identities = 142/261 (54%), Positives = 184/261 (70%), Gaps = 2/261 (0%)
 Frame = +3

Query: 3   ICEAVARGEVQSAVALVRPPGHHAESDRARGFCIFNNNAIAATHLLE--SDLGINKIMML 176
           + E VA GE+ SA+ALVRPPGHHAE + A GFC+FNN AIAA +LL   +DLGI KI+++
Sbjct: 122 VAEKVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIV 181

Query: 177 DWDIHHGNGIQKMFWKDPRVLYLSLHRYDEATFYPCSEEANYDMIGEGPGEGFNINVPFS 356
           DWD+HHGNG QKMF+ DPRVL+ S+HR+D  +FYP   +A+Y  IGEG G+G+NINVP+ 
Sbjct: 182 DWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPW- 240

Query: 357 KRSGCDDVNYLAVWEHVVLPVALEYNPDIILISAGFDAATDDPVGLTYRITPQCFARLLE 536
           +   C D +Y+A W+HV+LPVA  +NPDI+L+SAGFDAA  DP+G    ITP  +A LL 
Sbjct: 241 EHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLG-GCCITPNGYALLLT 299

Query: 537 KLMGFARGKIVMTLEGGYDPDSLANCVLSCVKTLLGDKKNYVDLDLVIPEDTKHLIKLVR 716
           KL+GFA+G+IVM LEGGY+  S+AN V +C K LLGDK  +   D+   E +  +I+ VR
Sbjct: 300 KLLGFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVR 359

Query: 717 GALCQFWDTFKKTPPSLIVKR 779
             L  FW       P  I  R
Sbjct: 360 DELKTFWPVLSNRLPENISLR 380


>ref|NP_200915.2| histone deacetylase 18 [Arabidopsis thaliana]
           gi|75246526|sp|Q8LRK8.1|HDA18_ARATH RecName:
           Full=Histone deacetylase 18
           gi|21105769|gb|AAM34783.1|AF510670_1 HDA18 [Arabidopsis
           thaliana] gi|332010036|gb|AED97419.1| histone
           deacetylase 18 [Arabidopsis thaliana]
          Length = 682

 Score =  283 bits (723), Expect = 2e-73
 Identities = 134/247 (54%), Positives = 180/247 (72%), Gaps = 2/247 (0%)
 Frame = +3

Query: 3   ICEAVARGEVQSAVALVRPPGHHAESDRARGFCIFNNNAIAATHLLES--DLGINKIMML 176
           + E VA GE+    A+VRPPGHHAESD A GFC+FNN A+AA+ LL    DL + KI+++
Sbjct: 169 VAEKVAEGELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIV 228

Query: 177 DWDIHHGNGIQKMFWKDPRVLYLSLHRYDEATFYPCSEEANYDMIGEGPGEGFNINVPFS 356
           DWDIHHGNG QKMFWKD RVL  S+HR+D  +FYP  ++ +++M+GEGPGEGFNINVP+ 
Sbjct: 229 DWDIHHGNGTQKMFWKDSRVLIFSVHRHDHGSFYPFGDDGDFNMVGEGPGEGFNINVPW- 287

Query: 357 KRSGCDDVNYLAVWEHVVLPVALEYNPDIILISAGFDAATDDPVGLTYRITPQCFARLLE 536
           ++ GC D +YLAVW H+++PV  E+ PDIIL+SAGFDAA  DP+G    +TP  ++ +L+
Sbjct: 288 EQGGCGDADYLAVWNHILIPVTKEFKPDIILLSAGFDAAIGDPLG-GCCVTPYGYSVMLK 346

Query: 537 KLMGFARGKIVMTLEGGYDPDSLANCVLSCVKTLLGDKKNYVDLDLVIPEDTKHLIKLVR 716
           KLM FA GKIV+ LEGGY+ +SL    L+CV+ LL DK+ +   +    E T+ +I+ VR
Sbjct: 347 KLMEFAHGKIVLALEGGYNLESLGKSSLACVQVLLEDKQIHGSSETYPLESTRRVIQAVR 406

Query: 717 GALCQFW 737
             LC +W
Sbjct: 407 ERLCTYW 413


>gb|EEC82400.1| hypothetical protein OsI_26768 [Oryza sativa Indica Group]
          Length = 695

 Score =  283 bits (723), Expect = 2e-73
 Identities = 142/261 (54%), Positives = 184/261 (70%), Gaps = 2/261 (0%)
 Frame = +3

Query: 3   ICEAVARGEVQSAVALVRPPGHHAESDRARGFCIFNNNAIAATHLLE--SDLGINKIMML 176
           + E VA GE+ SA+ALVRPPGHHAE + A GFC+FNN AIAA +LL   +DLGI KI+++
Sbjct: 122 VAEKVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIV 181

Query: 177 DWDIHHGNGIQKMFWKDPRVLYLSLHRYDEATFYPCSEEANYDMIGEGPGEGFNINVPFS 356
           DWD+HHGNG QKMF+ DPRVL+ S+HR+D  +FYP   +A+Y  IGEG G+G+NINVP+ 
Sbjct: 182 DWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPW- 240

Query: 357 KRSGCDDVNYLAVWEHVVLPVALEYNPDIILISAGFDAATDDPVGLTYRITPQCFARLLE 536
           +   C D +Y+A W+HV+LPVA  +NPDI+L+SAGFDAA  DP+G    ITP  +A LL 
Sbjct: 241 EHGKCGDADYIAAWDHVLLPVAETFNPDIVLVSAGFDAALGDPLG-GCCITPNGYALLLT 299

Query: 537 KLMGFARGKIVMTLEGGYDPDSLANCVLSCVKTLLGDKKNYVDLDLVIPEDTKHLIKLVR 716
           KL+GFA+G+IVM LEGGY+  S+AN V +C K LLGDK  +   D+   E +  +I+ VR
Sbjct: 300 KLLGFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVR 359

Query: 717 GALCQFWDTFKKTPPSLIVKR 779
             L  FW       P  I  R
Sbjct: 360 DELKTFWPILSNRLPENISLR 380