BLASTX nr result

ID: Coptis23_contig00003286 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003286
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317556.1| predicted protein [Populus trichocarpa] gi|2...   167   8e-40
ref|NP_188702.2| organic cation/carnitine transporter4 [Arabidop...   166   1e-39
ref|XP_002885393.1| carbohydrate transporter/ sugar porter [Arab...   162   3e-38
ref|XP_002280309.1| PREDICTED: organic cation transporter protei...   160   1e-37
ref|XP_004149938.1| PREDICTED: organic cation/carnitine transpor...   159   2e-37

>ref|XP_002317556.1| predicted protein [Populus trichocarpa] gi|222860621|gb|EEE98168.1|
           predicted protein [Populus trichocarpa]
          Length = 533

 Score =  167 bits (423), Expect = 8e-40
 Identities = 78/127 (61%), Positives = 95/127 (74%), Gaps = 8/127 (6%)
 Frame = -3

Query: 357 SGTNDVRSPLLV-------KASKNHD-EKMVIDEMLTTYCGEFGPWQFKHFVLTCCAWAL 202
           S   D+RSPLL        K  K  D +K+ ID+ML  +CGEFG WQ +HFVLTC AWAL
Sbjct: 6   SSDPDLRSPLLSSLEEPARKPEKGPDVQKLTIDDMLQKHCGEFGTWQLRHFVLTCLAWAL 65

Query: 201 EAFHTMVMIFADREPGWRCTSTGLDSGCSSLSRSVCGLEPGSWEWIGGSGASTIAEWGLV 22
           E FHTMVMIFADREP +RC    L SGC  +++SVCG EPGSW+W+GG+G+ST+A+WGLV
Sbjct: 66  EGFHTMVMIFADREPEFRC----LGSGCDEMAKSVCGFEPGSWDWVGGAGSSTVAQWGLV 121

Query: 21  CGDKYKV 1
           CG+KYKV
Sbjct: 122 CGEKYKV 128


>ref|NP_188702.2| organic cation/carnitine transporter4 [Arabidopsis thaliana]
           gi|75273307|sp|Q9LHQ6.1|OCT4_ARATH RecName: Full=Organic
           cation/carnitine transporter 4; Short=AtOCT4
           gi|9294345|dbj|BAB02242.1| organic anion
           transporter-like protein [Arabidopsis thaliana]
           gi|38564270|gb|AAR23714.1| At3g20660 [Arabidopsis
           thaliana] gi|51970990|dbj|BAD44187.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332642888|gb|AEE76409.1| organic cation/carnitine
           transporter4 [Arabidopsis thaliana]
          Length = 526

 Score =  166 bits (421), Expect = 1e-39
 Identities = 80/129 (62%), Positives = 90/129 (69%), Gaps = 4/129 (3%)
 Frame = -3

Query: 375 MPEPSDSGTNDVRSPLL----VKASKNHDEKMVIDEMLTTYCGEFGPWQFKHFVLTCCAW 208
           M  P D   NDVR PLL    VK     +E++ IDEML  YCGEFG WQ KHFVLTC AW
Sbjct: 1   MESPEDRNGNDVRQPLLEKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAW 60

Query: 207 ALEAFHTMVMIFADREPGWRCTSTGLDSGCSSLSRSVCGLEPGSWEWIGGSGASTIAEWG 28
           ALEAFHTMVMIFAD+EP WRC   G D    SL+   C L+P SWEW  G G+ST++EWG
Sbjct: 61  ALEAFHTMVMIFADQEPEWRC--VGSDCRVGSLN---CELDPSSWEWTAGKGSSTVSEWG 115

Query: 27  LVCGDKYKV 1
           L+CGDKYKV
Sbjct: 116 LICGDKYKV 124


>ref|XP_002885393.1| carbohydrate transporter/ sugar porter [Arabidopsis lyrata subsp.
           lyrata] gi|297331233|gb|EFH61652.1| carbohydrate
           transporter/ sugar porter [Arabidopsis lyrata subsp.
           lyrata]
          Length = 526

 Score =  162 bits (409), Expect = 3e-38
 Identities = 74/129 (57%), Positives = 88/129 (68%), Gaps = 4/129 (3%)
 Frame = -3

Query: 375 MPEPSDSGTNDVRSPLL----VKASKNHDEKMVIDEMLTTYCGEFGPWQFKHFVLTCCAW 208
           M  P +   NDVR PLL     K     +E++ IDEML  YCGEFG WQ KHFVLTC AW
Sbjct: 1   MESPDERNGNDVRQPLLEKIPAKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAW 60

Query: 207 ALEAFHTMVMIFADREPGWRCTSTGLDSGCSSLSRSVCGLEPGSWEWIGGSGASTIAEWG 28
           ALEAFHTMVMIFAD+EP WRC  +    G S+     C ++P SWEW  G G+ST++EWG
Sbjct: 61  ALEAFHTMVMIFADQEPEWRCVGSDCRVGSSN-----CDMDPSSWEWTAGKGSSTVSEWG 115

Query: 27  LVCGDKYKV 1
           L+CG+KYKV
Sbjct: 116 LICGEKYKV 124


>ref|XP_002280309.1| PREDICTED: organic cation transporter protein-like [Vitis vinifera]
          Length = 529

 Score =  160 bits (405), Expect = 1e-37
 Identities = 76/117 (64%), Positives = 87/117 (74%), Gaps = 2/117 (1%)
 Frame = -3

Query: 345 DVRSPLL--VKASKNHDEKMVIDEMLTTYCGEFGPWQFKHFVLTCCAWALEAFHTMVMIF 172
           D+ SPLL  VK      +K+ ID+ML  +CGEFG WQ +HFVLT  AWALEAFHTMVMIF
Sbjct: 12  DLASPLLRAVKTRGGEPQKLCIDDMLQRHCGEFGVWQLRHFVLTSLAWALEAFHTMVMIF 71

Query: 171 ADREPGWRCTSTGLDSGCSSLSRSVCGLEPGSWEWIGGSGASTIAEWGLVCGDKYKV 1
           AD+EP W C S+    GCS  S SVCGL+PGSWEW GG G+ST AEWGLVC +KYKV
Sbjct: 72  ADQEPAWTCVSS---RGCSVASTSVCGLDPGSWEWSGGPGSSTAAEWGLVCENKYKV 125


>ref|XP_004149938.1| PREDICTED: organic cation/carnitine transporter 4-like [Cucumis
           sativus]
          Length = 517

 Score =  159 bits (403), Expect = 2e-37
 Identities = 71/117 (60%), Positives = 84/117 (71%)
 Frame = -3

Query: 351 TNDVRSPLLVKASKNHDEKMVIDEMLTTYCGEFGPWQFKHFVLTCCAWALEAFHTMVMIF 172
           + ++R PLL    K   E++ +DEML  +CGEFG WQ KHFVLT  AWALEAFHTMVMIF
Sbjct: 5   SGEIRWPLLGAPEKEISERLTVDEMLEKHCGEFGRWQLKHFVLTSLAWALEAFHTMVMIF 64

Query: 171 ADREPGWRCTSTGLDSGCSSLSRSVCGLEPGSWEWIGGSGASTIAEWGLVCGDKYKV 1
           ADREP W C  +G  SGC      VCG+E G W W GG+G ST++EWGL+CGDKYKV
Sbjct: 65  ADREPEWVCVGSG--SGCDEEKGGVCGIEAGWWRWSGGAGISTVSEWGLICGDKYKV 119


Top