BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003273
         (2557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containi...   637   e-180
ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containi...   592   e-166
ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containi...   589   e-165
gb|ADN33740.1| pentatricopeptide repeat-containing protein [Cucu...   585   e-164
ref|XP_003602247.1| Pentatricopeptide repeat-containing protein ...   585   e-164

>ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Vitis vinifera]
          Length = 672

 Score =  637 bits (1643), Expect = e-180
 Identities = 348/641 (54%), Positives = 437/641 (68%), Gaps = 8/641 (1%)
 Frame = -1

Query: 2347 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2168
            S+R LS+ TPEE         R LRIEPPL+S+R Q+                    E V
Sbjct: 30   SLRHLSFVTPEEAAAERRRRKRRLRIEPPLSSLRHQQAQPRQNPNPNHNPNAPKLP-EPV 88

Query: 2167 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1988
            SAL G RL+LHN+IL LIR NDLDEAAL TRHSIYSNC+PTIFT N+V+AALLRQSRYSD
Sbjct: 89   SALSGNRLNLHNRILGLIRVNDLDEAALLTRHSIYSNCRPTIFTVNSVLAALLRQSRYSD 148

Query: 1987 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1808
            +LSLHRF+TQAGVAANVVTHNLLINAY DCRKTDTALEHYKQLIN+APF+PSPTTYRIL+
Sbjct: 149  LLSLHRFITQAGVAANVVTHNLLINAYLDCRKTDTALEHYKQLINDAPFNPSPTTYRILI 208

Query: 1807 KGLVDNLKVDRAVELKDEMLEKGLAADPVVYNYLILGLVKNEDGDRXXXXXXXXXXXLDF 1628
            KG+VDN KV+RA+ELK+EML KG AADPVVY+YL+LG V+N + D            L  
Sbjct: 209  KGIVDNGKVERALELKEEMLGKGFAADPVVYSYLMLGHVRNLNADGVFELYEELKEKLGD 268

Query: 1627 VNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDEA 1448
            V+DG+V G+LMK YFL+G++KEAM+ YA+  GEGS I+M+A+A+NSVL AL KNGK DEA
Sbjct: 269  VDDGVVVGSLMKGYFLRGMEKEAMQCYAEAVGEGSKIRMSAVAFNSVLDALSKNGKFDEA 328

Query: 1447 LQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSFN 1268
            + LFERM  E++PPR+L++NLGS+NVMVD FC  G+F DAIEVFRKMGEKR S DTLS+N
Sbjct: 329  MLLFERMMAEYNPPRRLSMNLGSFNVMVDGFCTAGRFKDAIEVFRKMGEKRCSADTLSYN 388

Query: 1267 NLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDTCFEQSRADDAAEYFGKMVE 1088
            NLI+QLC N ++ +AEELY EM    G NPDE+TYVLL+DTCF+++R DD A YF KMVE
Sbjct: 389  NLIEQLCNNGMLAEAEELYGEMAN-KGVNPDEFTYVLLMDTCFKENRTDDGAGYFRKMVE 447

Query: 1087 SGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDEV 908
            +GL+PNLA Y+K+VDGL+K GKIDEA  F+  M+ KL++D A+++ +++AL E  K D+V
Sbjct: 448  TGLRPNLAVYSKLVDGLVKVGKIDEAKSFYDLMVKKLKMDEASYKFLMKALFEVGKHDDV 507

Query: 907  LKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDLVXXXXXXXXXXXXXXXXXXXXXXX 728
            LK++ +ML D+     +++ EFV++ LRKEGRE D+V                       
Sbjct: 508  LKMIGDMLDDDASEFTTDLQEFVKEELRKEGREEDVV----------------------K 545

Query: 727  XXXXXXXXXXXXXXXXAGGTYSLFGDTKPSNGNVSPLSLFGDTKTSNS-DV---PSAETF 560
                            A  T +     K +  ++ P  LFG   T N  DV    + E  
Sbjct: 546  LMEDKEREKAEAQAKEAAATEAAKASAKAAVSSLLPSKLFGSKDTENEPDVVIGNTVEAI 605

Query: 559  SMNGEAPSGNQEGSGGAPA----VEATPALGVVEETIDASD 449
            S+N E     QE  G +PA     EAT A    +  + + D
Sbjct: 606  SVNEEVEDVEQESIGDSPAESGSEEATKAHNSADLDVKSDD 646


>ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Cucumis sativus] gi|449511036|ref|XP_004163845.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At3g49240-like [Cucumis sativus]
          Length = 624

 Score =  592 bits (1526), Expect = e-166
 Identities = 302/550 (54%), Positives = 393/550 (71%), Gaps = 1/550 (0%)
 Frame = -1

Query: 2446 MYLSKLTFFSXXXXXXXXXXXXXXXXXXXXXXLSIRCLSYATPEEXXXXXXXXXRTLRIE 2267
            M LSK  FF+                      +++R LS+A+ EE         R LRIE
Sbjct: 1    MALSKPAFFTHLKTLTGSHHLLQRQALAPFPIVTLRFLSFASAEEADAERRRRKRRLRIE 60

Query: 2266 PPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHVSALKGKRLDLHNKILTLIRENDLDEAA 2087
            PPL+S    R                   PEH+SAL G RL+LHN+ILTLIRENDL+EAA
Sbjct: 61   PPLSSSSAARPLTQPPRSQTPQNPNAPKIPEHISALSGNRLNLHNRILTLIRENDLEEAA 120

Query: 2086 LYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDMLSLHRFVTQAGVAANVVTHNLLINAY 1907
            L+TRHSIYSNC+PTIFT NAV+ A LRQS+Y+D+LSLHRF+TQAGV  N++THNL+   Y
Sbjct: 121  LFTRHSIYSNCRPTIFTVNAVLNAQLRQSKYADLLSLHRFITQAGVVPNIITHNLIFQTY 180

Query: 1906 CDCRKTDTALEHYKQLINNAPFDPSPTTYRILVKGLVDNLKVDRAVELKDEMLEKGLAAD 1727
             DCRK DTA+EHYKQLIN+APF+PSPTTYRIL+KGLVDN K++RA+ELKDEM+EKG A D
Sbjct: 181  LDCRKPDTAMEHYKQLINDAPFNPSPTTYRILIKGLVDNNKLERAMELKDEMIEKGFAPD 240

Query: 1726 PVVYNYLILGLVKNEDGDRXXXXXXXXXXXLD-FVNDGIVYGNLMKAYFLKGLDKEAMEI 1550
            P++Y+YL+ G V++ D D            L   V DG+VYGNLMK YF+K +++EAM+ 
Sbjct: 241  PLIYHYLMGGCVRSLDPDGVFKLFEELKEKLGATVEDGVVYGNLMKGYFMKEMEEEAMKC 300

Query: 1549 YADLSGEGSSIKMNALAYNSVLQALIKNGKSDEALQLFERMKEEHSPPRKLTVNLGSYNV 1370
            Y +  G+ S +KM+A+AYNSVL AL +NGK  EAL LF+RM +EH PPR L VNLGS+NV
Sbjct: 301  YEETVGDNSVVKMSAIAYNSVLDALCRNGKFGEALTLFDRMTKEHRPPRHLAVNLGSFNV 360

Query: 1369 MVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSFNNLIQQLCANDLMPKAEELYREMGEIP 1190
            MVD +C +G+F +AIEVF KMG+ R  PDTLSFNNLI+QLC N ++ +AE LY  M +  
Sbjct: 361  MVDGYCIEGRFKEAIEVFEKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDD-K 419

Query: 1189 GANPDEYTYVLLIDTCFEQSRADDAAEYFGKMVESGLKPNLATYNKVVDGLIKAGKIDEA 1010
            G NPDE+TY LL+D+CF+++RADDAA YF KMV+SGL+PN+A YN +VD L+K GKID+A
Sbjct: 420  GVNPDEFTYGLLMDSCFKKNRADDAAAYFRKMVDSGLRPNIAVYNILVDELVKLGKIDDA 479

Query: 1009 NGFFSQMIVKLRLDAANFEVMLRALCEAAKLDEVLKLVSEMLKDEKVGLNSEMDEFVRDA 830
              FF  M+ KL++DA++++ +++AL E+ K+DE+L +V  +L D+ +  + E+ EFVR  
Sbjct: 480  KSFFDLMVKKLKMDASSYQFIMKALSESGKMDEILNVVDTLLDDDGIEFSEELQEFVRGE 539

Query: 829  LRKEGREGDL 800
            LRKE RE DL
Sbjct: 540  LRKENREEDL 549


>ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Glycine max]
          Length = 631

 Score =  589 bits (1518), Expect = e-165
 Identities = 296/517 (57%), Positives = 383/517 (74%), Gaps = 1/517 (0%)
 Frame = -1

Query: 2347 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2168
            SIR LS+++PEE         R LR+EPPL+++   +                   PEHV
Sbjct: 27   SIRLLSFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPLQSPYYLNPNNPKLPEHV 86

Query: 2167 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1988
            SAL G RL+LHN+ILTLIRENDLDEAALYTRHSIYSNC+PTIFT NAV+AALLRQSRYSD
Sbjct: 87   SALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSD 146

Query: 1987 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1808
            +LSLHRF+TQAGV  N++THNL+   Y DCRK DTALEHYKQ +N+AP +PSPTTYR+L+
Sbjct: 147  LLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLI 206

Query: 1807 KGLVDNLKVDRAVELKDEMLEKGLAADPVVYNYLILGLVKNEDGDR-XXXXXXXXXXXLD 1631
            KGL+DN K++RA+++K EM  KG A DP+VY+YL+LG  +  DGD               
Sbjct: 207  KGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHARVSDGDAILRLYEELRERLGG 266

Query: 1630 FVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDE 1451
             V DGIV+G LMK YF+KG++KEAME Y +  G+    KM+A+ YNSVL AL KNG+ DE
Sbjct: 267  VVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKK---KMSAVGYNSVLDALSKNGRFDE 323

Query: 1450 ALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSF 1271
            AL+LF+RM +EH P ++L+VNLGS+NV+VD +C++G+F++A+EVFRKMGE R SPDTLSF
Sbjct: 324  ALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSF 383

Query: 1270 NNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDTCFEQSRADDAAEYFGKMV 1091
            NNLI +LC N  + +AEE+Y EM E  G +PDE+TY LL+D CF ++RADDAA YF KMV
Sbjct: 384  NNLIDRLCDNGRIVEAEEVYGEM-EGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMV 442

Query: 1090 ESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDE 911
            +SGL+PNLA YN++V GL+K GKIDEA GFF  M+ KL++D  +++ +++ L +  +LDE
Sbjct: 443  DSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDE 502

Query: 910  VLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 800
            +LK+V  +L D  V  + E  EFV+  LRKEGRE +L
Sbjct: 503  MLKIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEEL 539


>gb|ADN33740.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
            melo]
          Length = 624

 Score =  585 bits (1508), Expect = e-164
 Identities = 298/550 (54%), Positives = 388/550 (70%), Gaps = 1/550 (0%)
 Frame = -1

Query: 2446 MYLSKLTFFSXXXXXXXXXXXXXXXXXXXXXXLSIRCLSYATPEEXXXXXXXXXRTLRIE 2267
            M LSK  FF+                      ++ R LS+A+ EE         R LRIE
Sbjct: 1    MALSKPAFFTHLKTLTGSHHLLQRQAPAPLPIVTFRFLSFASAEEADAERRRRKRRLRIE 60

Query: 2266 PPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHVSALKGKRLDLHNKILTLIRENDLDEAA 2087
            PPL+S    R                   PEH+SAL G RL+LHN+ILTLIRENDL+EAA
Sbjct: 61   PPLSSSSAARPQSQPSRSQTPQNPNTPKVPEHISALSGNRLNLHNRILTLIRENDLEEAA 120

Query: 2086 LYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDMLSLHRFVTQAGVAANVVTHNLLINAY 1907
            L+TRHSIYSNC+PTIFT NAV+ A LRQS+Y+D+LSLHRF+TQAGV  N++THNL+   Y
Sbjct: 121  LFTRHSIYSNCRPTIFTVNAVLNAQLRQSKYADLLSLHRFITQAGVVPNIITHNLIFQTY 180

Query: 1906 CDCRKTDTALEHYKQLINNAPFDPSPTTYRILVKGLVDNLKVDRAVELKDEMLEKGLAAD 1727
             DCRK DTA+EHYKQLIN+APF+PSPTTYRIL+KGLVDN K++RA+ELK+EM+ KG A D
Sbjct: 181  LDCRKPDTAMEHYKQLINDAPFNPSPTTYRILIKGLVDNKKLERAMELKEEMIVKGFAPD 240

Query: 1726 PVVYNYLILGLVKNEDGDR-XXXXXXXXXXXLDFVNDGIVYGNLMKAYFLKGLDKEAMEI 1550
            P++Y+YL+ G V++ D D                V DG+VYGNLMK YF+K +++EAM+ 
Sbjct: 241  PLIYHYLMAGCVRSSDPDGVFKLFEELKEKLGGTVEDGVVYGNLMKGYFMKEMEEEAMKC 300

Query: 1549 YADLSGEGSSIKMNALAYNSVLQALIKNGKSDEALQLFERMKEEHSPPRKLTVNLGSYNV 1370
            Y +  G+   +KM+A+AYNSVL AL K+GK  EAL LF+RM +EH PPR L VNLG++NV
Sbjct: 301  YEETVGDNPVVKMSAIAYNSVLDALCKHGKFSEALTLFDRMTKEHRPPRHLAVNLGTFNV 360

Query: 1369 MVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSFNNLIQQLCANDLMPKAEELYREMGEIP 1190
            MVD +C +G+F +AI VF +MG+ R SPDTLSFNNLI+QLC N ++ +AE LY  MGE  
Sbjct: 361  MVDGYCIKGRFKEAIGVFEEMGDYRCSPDTLSFNNLIEQLCNNGMLAEAEMLYGTMGE-K 419

Query: 1189 GANPDEYTYVLLIDTCFEQSRADDAAEYFGKMVESGLKPNLATYNKVVDGLIKAGKIDEA 1010
            G NPDE+TY LL+ +CF+++RADDAA YF KMV+SGL+PN+A YN +V  L+K GK+DEA
Sbjct: 420  GVNPDEFTYGLLMHSCFQKNRADDAAAYFRKMVDSGLRPNIAVYNILVGELVKLGKVDEA 479

Query: 1009 NGFFSQMIVKLRLDAANFEVMLRALCEAAKLDEVLKLVSEMLKDEKVGLNSEMDEFVRDA 830
              FF  M+ KL++DA+N++ +++AL E+ K+DEVL +V  +L D+ +  + E+ EFVR  
Sbjct: 480  KSFFDLMVKKLKMDASNYQFIMKALSESGKMDEVLNVVDTLLDDDGIEFSEELQEFVRGE 539

Query: 829  LRKEGREGDL 800
            LRKE RE DL
Sbjct: 540  LRKEDREEDL 549


>ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355491295|gb|AES72498.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 704

 Score =  585 bits (1507), Expect = e-164
 Identities = 299/520 (57%), Positives = 380/520 (73%), Gaps = 6/520 (1%)
 Frame = -1

Query: 2341 RCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXP----- 2177
            R LS+A+PEE         R LRIEPPL+++   ++                        
Sbjct: 31   RFLSFASPEEAAAERRRRKRQLRIEPPLSALNRNQQQSPNPNPKSQSPPYYLNPTDPKLP 90

Query: 2176 EHVSALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSR 1997
            EH SAL G R++LHN ILTLIR+NDLDEAALYTRHSIYSNC+PTIFT NAV+ AL RQSR
Sbjct: 91   EHASALTGNRVNLHNTILTLIRQNDLDEAALYTRHSIYSNCRPTIFTINAVLFALFRQSR 150

Query: 1996 YSDMLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYR 1817
            YSD+LSLHRF+TQAGV  N++T+NL+   Y DCRK DTALE++KQ I +APF+PSPTT+R
Sbjct: 151  YSDLLSLHRFITQAGVVPNIITYNLIFQTYLDCRKPDTALENFKQFIKDAPFNPSPTTFR 210

Query: 1816 ILVKGLVDNLKVDRAVELKDEMLEKGLAADPVVYNYLILGLVKNEDGDR-XXXXXXXXXX 1640
            IL+KGLVDN ++DRA+++KD+M   G A DP+VY+YL+LG  ++ DGD            
Sbjct: 211  ILIKGLVDNNRLDRAMDIKDQMNASGFAPDPLVYHYLMLGHARSSDGDGVLRVYEELKEK 270

Query: 1639 XLDFVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGK 1460
                V DG+V G LMK YFLKG++KEAME Y ++  EG   KM+ +AYNSVL AL KNGK
Sbjct: 271  LGGVVEDGVVLGCLMKGYFLKGMEKEAMECYQEVFVEGK--KMSDIAYNSVLDALAKNGK 328

Query: 1459 SDEALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDT 1280
             DEA++LF+RM +EH+PP KL VNLGS+NVMVD +C +GKF +AIEVFR MGE R  PDT
Sbjct: 329  FDEAMRLFDRMIKEHNPPAKLAVNLGSFNVMVDGYCAEGKFKEAIEVFRSMGESRCKPDT 388

Query: 1279 LSFNNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDTCFEQSRADDAAEYFG 1100
            LSFNNLI+QLC N ++ +AEE+Y EM E  G NPDEYTY LL+DTCF+++R DDAA YF 
Sbjct: 389  LSFNNLIEQLCNNGMILEAEEVYGEM-EGKGVNPDEYTYGLLMDTCFKENRPDDAASYFK 447

Query: 1099 KMVESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAK 920
            KMVESGL+PNLA YN++VDGL+K GKID+A  FF  M+ KL++D A+++ M++ L EA +
Sbjct: 448  KMVESGLRPNLAVYNRLVDGLVKVGKIDDAKFFFDLMVKKLKMDVASYQFMMKVLSEAGR 507

Query: 919  LDEVLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 800
            LD+VL++V+ +L D  V  + E  EFV+  LRKEGRE DL
Sbjct: 508  LDDVLQIVNMLLDDNGVDFDEEFQEFVKVELRKEGREEDL 547