BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003212
         (443 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002878157.1| 40S ribosomal protein S2 [Arabidopsis lyrata...   285   3e-75
ref|NP_191308.1| 40S ribosomal protein S2-4 [Arabidopsis thalian...   285   4e-75
ref|NP_181715.1| 40S ribosomal protein S2-3 [Arabidopsis thalian...   283   1e-74
gb|AAM62944.1| 40S ribosomal protein S2 [Arabidopsis thaliana]        283   1e-74
ref|XP_002886684.1| hypothetical protein ARALYDRAFT_475376 [Arab...   283   1e-74

>ref|XP_002878157.1| 40S ribosomal protein S2 [Arabidopsis lyrata subsp. lyrata]
           gi|297323995|gb|EFH54416.1| 40S ribosomal protein S2
           [Arabidopsis lyrata subsp. lyrata]
          Length = 272

 Score =  285 bits (729), Expect = 3e-75
 Identities = 141/147 (95%), Positives = 145/147 (98%)
 Frame = +1

Query: 1   KEFQIIDLLLGAHLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVA 180
           KE+QIIDLL+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVA
Sbjct: 70  KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVA 129

Query: 181 TAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 360
           TAIRGAIILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR
Sbjct: 130 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 189

Query: 361 VPKKVLQFAGIDDVFTSSRGSTKTLGN 441
           VPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 190 VPKKVLQFAGIDDVFTSSRGSTKTLGN 216


>ref|NP_191308.1| 40S ribosomal protein S2-4 [Arabidopsis thaliana]
           gi|75313287|sp|Q9SCM3.1|RS24_ARATH RecName: Full=40S
           ribosomal protein S2-4 gi|6706420|emb|CAB66106.1| 40S
           ribosomal protein S2 homolog [Arabidopsis thaliana]
           gi|21536514|gb|AAM60846.1| 40S ribosomal protein S2
           homolog [Arabidopsis thaliana]
           gi|30017231|gb|AAP12849.1| At3g57490 [Arabidopsis
           thaliana] gi|110736085|dbj|BAF00015.1| 40S ribosomal
           protein S2 homolog [Arabidopsis thaliana]
           gi|332646141|gb|AEE79662.1| 40S ribosomal protein S2-4
           [Arabidopsis thaliana]
          Length = 276

 Score =  285 bits (728), Expect = 4e-75
 Identities = 140/147 (95%), Positives = 145/147 (98%)
 Frame = +1

Query: 1   KEFQIIDLLLGAHLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVA 180
           KE+QIIDLL+G  LKDEVMKIMPVQKQTRAGQRTRFKAF+VVGDSNGHVGLGVKCSKEVA
Sbjct: 74  KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133

Query: 181 TAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 360
           TAIRGAIILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 193

Query: 361 VPKKVLQFAGIDDVFTSSRGSTKTLGN 441
           VPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 194 VPKKVLQFAGIDDVFTSSRGSTKTLGN 220


>ref|NP_181715.1| 40S ribosomal protein S2-3 [Arabidopsis thaliana]
           gi|3915847|sp|P49688.2|RS23_ARATH RecName: Full=40S
           ribosomal protein S2-3 gi|2335095|gb|AAC02764.1| 40S
           ribosomal protein S2 [Arabidopsis thaliana]
           gi|15081715|gb|AAK82512.1| At2g41840/T11A7.6
           [Arabidopsis thaliana] gi|22137092|gb|AAM91391.1|
           At2g41840/T11A7.6 [Arabidopsis thaliana]
           gi|330254945|gb|AEC10039.1| 40S ribosomal protein S2-3
           [Arabidopsis thaliana]
          Length = 285

 Score =  283 bits (724), Expect = 1e-74
 Identities = 140/147 (95%), Positives = 144/147 (97%)
 Frame = +1

Query: 1   KEFQIIDLLLGAHLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVA 180
           KE+QIID+L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVA
Sbjct: 83  KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142

Query: 181 TAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 360
           TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 202

Query: 361 VPKKVLQFAGIDDVFTSSRGSTKTLGN 441
           VPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 203 VPKKVLQFAGIDDVFTSSRGSTKTLGN 229


>gb|AAM62944.1| 40S ribosomal protein S2 [Arabidopsis thaliana]
          Length = 285

 Score =  283 bits (724), Expect = 1e-74
 Identities = 140/147 (95%), Positives = 144/147 (97%)
 Frame = +1

Query: 1   KEFQIIDLLLGAHLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVA 180
           KE+QIID+L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVA
Sbjct: 83  KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142

Query: 181 TAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 360
           TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 202

Query: 361 VPKKVLQFAGIDDVFTSSRGSTKTLGN 441
           VPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 203 VPKKVLQFAGIDDVFTSSRGSTKTLGN 229


>ref|XP_002886684.1| hypothetical protein ARALYDRAFT_475376 [Arabidopsis lyrata subsp.
           lyrata] gi|297332525|gb|EFH62943.1| hypothetical protein
           ARALYDRAFT_475376 [Arabidopsis lyrata subsp. lyrata]
          Length = 282

 Score =  283 bits (723), Expect = 1e-74
 Identities = 140/147 (95%), Positives = 144/147 (97%)
 Frame = +1

Query: 1   KEFQIIDLLLGAHLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVA 180
           KE+QIIDLL+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVA
Sbjct: 80  KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 139

Query: 181 TAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 360
           TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAAR
Sbjct: 140 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAAR 199

Query: 361 VPKKVLQFAGIDDVFTSSRGSTKTLGN 441
           VPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 200 VPKKVLQFAGIDDVFTSSRGSTKTLGN 226