BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003208
         (2830 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30170.3| unnamed protein product [Vitis vinifera]              363   1e-97
ref|XP_002266748.1| PREDICTED: splicing factor 3A subunit 2 [Vit...   363   1e-97
ref|XP_002323495.1| predicted protein [Populus trichocarpa] gi|2...   358   4e-96
ref|XP_003543690.1| PREDICTED: splicing factor 3A subunit 2-like...   358   6e-96
ref|XP_002519451.1| Splicing factor 3A subunit, putative [Ricinu...   357   1e-95

>emb|CBI30170.3| unnamed protein product [Vitis vinifera]
          Length = 241

 Score =  363 bits (932), Expect = 1e-97
 Identities = 183/233 (78%), Positives = 193/233 (82%), Gaps = 3/233 (1%)
 Frame = -3

Query: 851 MD*DWGSKPXXXXXXXAQNEAIDXXXXXXXXXXETIDLAKDPYFMRNHLGSYECKLCLTL 672
           MD DWGSKP       AQNEAID          ETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDRDWGSKPGTGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 671 HNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQPHKRKVNLRKSVKIGRPGYRVTKQ 492
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKE+PA PQPHKRKV++RK+VKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 491 FDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAADPYEIIAFK 312
           FDPETKQRSLLFQIEYPEIEDL KPRHRFMSS+EQR++S DKRYQYLLFAA+PYEIIAFK
Sbjct: 121 FDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQSFDKRYQYLLFAAEPYEIIAFK 180

Query: 311 VPSIEIDKSSSKLFTHWDPDSKMFTLQLYF---XXXXXXXXXXXXANGTEAPG 162
           VPS EIDKS+ K F+HWDPDSKMFTLQLYF               ANGT APG
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPASAANGTTAPG 233


>ref|XP_002266748.1| PREDICTED: splicing factor 3A subunit 2 [Vitis vinifera]
          Length = 357

 Score =  363 bits (932), Expect = 1e-97
 Identities = 183/233 (78%), Positives = 193/233 (82%), Gaps = 3/233 (1%)
 Frame = -3

Query: 851 MD*DWGSKPXXXXXXXAQNEAIDXXXXXXXXXXETIDLAKDPYFMRNHLGSYECKLCLTL 672
           MD DWGSKP       AQNEAID          ETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDRDWGSKPGTGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 671 HNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQPHKRKVNLRKSVKIGRPGYRVTKQ 492
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKE+PA PQPHKRKV++RK+VKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 491 FDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAADPYEIIAFK 312
           FDPETKQRSLLFQIEYPEIEDL KPRHRFMSS+EQR++S DKRYQYLLFAA+PYEIIAFK
Sbjct: 121 FDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQSFDKRYQYLLFAAEPYEIIAFK 180

Query: 311 VPSIEIDKSSSKLFTHWDPDSKMFTLQLYF---XXXXXXXXXXXXANGTEAPG 162
           VPS EIDKS+ K F+HWDPDSKMFTLQLYF               ANGT APG
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPASAANGTTAPG 233


>ref|XP_002323495.1| predicted protein [Populus trichocarpa] gi|222868125|gb|EEF05256.1|
           predicted protein [Populus trichocarpa]
          Length = 334

 Score =  358 bits (919), Expect = 4e-96
 Identities = 175/210 (83%), Positives = 187/210 (89%)
 Frame = -3

Query: 851 MD*DWGSKPXXXXXXXAQNEAIDXXXXXXXXXXETIDLAKDPYFMRNHLGSYECKLCLTL 672
           MD +WGSKP       AQNEAID          ETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 671 HNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQPHKRKVNLRKSVKIGRPGYRVTKQ 492
           HNNEGNYLAHTQGKRHQTNLAKRAAREAK++PALPQP+KRKVN+RK+VKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPALPQPNKRKVNIRKTVKIGRPGYRVTKQ 120

Query: 491 FDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAADPYEIIAFK 312
           FDPETKQRSLLFQIEYPEIED TKPRHRFMSSYEQRIE+ DKR+QYLLF+A+PYEIIAFK
Sbjct: 121 FDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSYEQRIEANDKRFQYLLFSAEPYEIIAFK 180

Query: 311 VPSIEIDKSSSKLFTHWDPDSKMFTLQLYF 222
           VPS EIDKS+ K F+HWDPDSKMFTLQLYF
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYF 210


>ref|XP_003543690.1| PREDICTED: splicing factor 3A subunit 2-like [Glycine max]
          Length = 350

 Score =  358 bits (918), Expect = 6e-96
 Identities = 174/210 (82%), Positives = 184/210 (87%)
 Frame = -3

Query: 851 MD*DWGSKPXXXXXXXAQNEAIDXXXXXXXXXXETIDLAKDPYFMRNHLGSYECKLCLTL 672
           MD +WGSKP       AQNEAID          ETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 671 HNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQPHKRKVNLRKSVKIGRPGYRVTKQ 492
           HNNEGNYLAHTQGKRHQTNLAKRAAREAK+SPA PQPHKRKV LRK+VKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKDSPAQPQPHKRKVTLRKTVKIGRPGYRVTKQ 120

Query: 491 FDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAADPYEIIAFK 312
           +DPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQR++  DK YQYLLFAA+PYEI+AFK
Sbjct: 121 YDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKSYQYLLFAAEPYEIVAFK 180

Query: 311 VPSIEIDKSSSKLFTHWDPDSKMFTLQLYF 222
           VPS EIDKS+ K F+HWDPDSKMFTLQLYF
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYF 210


>ref|XP_002519451.1| Splicing factor 3A subunit, putative [Ricinus communis]
           gi|223541314|gb|EEF42865.1| Splicing factor 3A subunit,
           putative [Ricinus communis]
          Length = 327

 Score =  357 bits (916), Expect = 1e-95
 Identities = 180/234 (76%), Positives = 191/234 (81%), Gaps = 3/234 (1%)
 Frame = -3

Query: 851 MD*DWGSKPXXXXXXXAQNEAIDXXXXXXXXXXETIDLAKDPYFMRNHLGSYECKLCLTL 672
           MD +WGSKP       AQNEAID          ETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 671 HNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQPHKRKVNLRKSVKIGRPGYRVTKQ 492
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQP+KRK+N+RK+VKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQPNKRKINIRKTVKIGRPGYRVTKQ 120

Query: 491 FDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAADPYEIIAFK 312
           FD ETKQRSLLFQIEYPEIED TKPRHRFMSS+EQR++  DKRYQYLLFAA+PYEIIAFK
Sbjct: 121 FDHETKQRSLLFQIEYPEIEDNTKPRHRFMSSFEQRMQPYDKRYQYLLFAAEPYEIIAFK 180

Query: 311 VPSIEIDKSSSKLFTHWDPDSKMFTLQLYF---XXXXXXXXXXXXANGTEAPGV 159
           VPS EIDKS+ K F+HWDPDSKMFTLQLYF                NG  APGV
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKSQAPPAPNGVAAPGV 234