BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003191
         (225 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003616261.1| Pentatricopeptide repeat-containing protein ...    79   4e-13
ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selag...    79   5e-13
ref|XP_002328356.1| predicted protein [Populus trichocarpa] gi|2...    78   7e-13
ref|XP_002328355.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|NP_197167.1| pentatricopeptide repeat-containing protein [Ar...    77   2e-12

>ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355517596|gb|AES99219.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 37/73 (50%), Positives = 47/73 (64%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M  RGI PD+ TYNALI+GL   G  K+A +L NEM G G  PD  T+  ++D CCKDG 
Sbjct: 357 MKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGD 416

Query: 182 VDEAFELFQTMIE 220
           +D A E+   M+E
Sbjct: 417 MDSALEIKDRMVE 429



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/74 (43%), Positives = 47/74 (63%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M    I+PDVFTY+ALI+GL    + ++A  LF+EM   G++P+G T+  +ID  CK G 
Sbjct: 287 MESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGK 346

Query: 182 VDEAFELFQTMIER 223
           +D A   F+ M +R
Sbjct: 347 IDLALRNFEIMKDR 360


>ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
           gi|300158761|gb|EFJ25383.1| hypothetical protein
           SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 37/74 (50%), Positives = 50/74 (67%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M+++G  PDV TY+ +I GL  +GK  +A+ +  EMT +G+ PD  TY II+D  C+ G 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 182 VDEAFELFQTMIER 223
           VDEA ELF  MIER
Sbjct: 61  VDEADELFHKMIER 74



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/73 (42%), Positives = 47/73 (64%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M+++  +PDV   NA+ID L  + K  DA ++  EM+  G +PD  TY I++D  CK  +
Sbjct: 283 MTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNL 342

Query: 182 VDEAFELFQTMIE 220
           VD+A ELF TM++
Sbjct: 343 VDKAHELFSTMVD 355



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 31/74 (41%), Positives = 45/74 (60%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M +R + PDV T+N L+DGL  +GK  +A  L + M+   +LPDG T   ++   C+D  
Sbjct: 388 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKR 447

Query: 182 VDEAFELFQTMIER 223
            DEA  LFQ M+E+
Sbjct: 448 TDEAVRLFQYMVEK 461



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M+ +G  PD  TYN ++ GL   GK  +A + F+ M  RG  PD   Y  ++DA  K+G 
Sbjct: 106 MASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 165

Query: 182 VDEAFELFQTM 214
           V EA+ LF+TM
Sbjct: 166 VAEAWGLFKTM 176



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFN--EMTGRGILPDGHTYGIIIDACCKD 175
           M  RG +PDV  YN L+D LY  GK  +A  LF   +M  R + PD  TY  +ID  C+ 
Sbjct: 141 MPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRV 200

Query: 176 GMVDEAFELFQTMIER 223
              DEA +LF+ +I +
Sbjct: 201 EKTDEAMKLFKDVIAK 216



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/74 (35%), Positives = 45/74 (60%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M+++G+NPDV TY  ++D L  +GK  +A  LF++M  RG   +   Y  +I+  CKD  
Sbjct: 36  MTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDEN 95

Query: 182 VDEAFELFQTMIER 223
           ++ A++L + M  +
Sbjct: 96  IERAYKLLEEMASK 109



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 27/73 (36%), Positives = 44/73 (60%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M+ R + PD+ TYN LIDG     K  +A++LF ++  +G +PD  TY  I+    +   
Sbjct: 178 MADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSN 237

Query: 182 VDEAFELFQTMIE 220
           +DEA E+F+ M++
Sbjct: 238 MDEAEEMFKKMVD 250



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           MS+ G  PDV TYN L+DGL  +     A  LF+ M   G  PD  +Y ++++  CK   
Sbjct: 318 MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 377

Query: 182 VDEAFELFQTMIER 223
           V +A  LF  MIER
Sbjct: 378 VHDARVLFDRMIER 391



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/73 (38%), Positives = 43/73 (58%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M   G  PD+ +Y+ +++GL  + K  DA  LF+ M  R ++PD  T+ I++D  CK G 
Sbjct: 353 MVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGK 412

Query: 182 VDEAFELFQTMIE 220
           +DEA +L   M E
Sbjct: 413 LDEAKDLLDVMSE 425


>ref|XP_002328356.1| predicted protein [Populus trichocarpa] gi|222838071|gb|EEE76436.1|
           predicted protein [Populus trichocarpa]
          Length = 613

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 35/74 (47%), Positives = 52/74 (70%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M +RGI P+VFTYN+++ G    G+  +A RLF EM GR ++P+  T+ I++D  CK+GM
Sbjct: 259 MVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGM 318

Query: 182 VDEAFELFQTMIER 223
           V EA  +F+TM E+
Sbjct: 319 VSEARLVFETMTEK 332



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/71 (45%), Positives = 45/71 (63%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M + GI+PD  T+NALI+GL   GK K+A+ LFNEM  RG  P+  +Y  +I+  CK G 
Sbjct: 154 MFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGN 213

Query: 182 VDEAFELFQTM 214
              A ++F+ M
Sbjct: 214 TSMAVDVFKKM 224



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/74 (41%), Positives = 46/74 (62%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M  + +NPD  TY+ L+ GL   G+ K+A+ LF EM   G  P+  TY I++D  CK G 
Sbjct: 399 MYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGH 458

Query: 182 VDEAFELFQTMIER 223
           +DEA +L ++M E+
Sbjct: 459 LDEALKLLKSMKEK 472



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 27/74 (36%), Positives = 42/74 (56%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M+++G+ PD+ TYNAL+DG        +A ++F  M  +G  P  H+Y I+I+  CK   
Sbjct: 329 MTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRR 388

Query: 182 VDEAFELFQTMIER 223
           +DEA  L   M  +
Sbjct: 389 MDEAKSLLAEMYHK 402



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/71 (36%), Positives = 46/71 (64%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M ++ + P++  Y  LI+G++ +GK + A  LF+++ G G  PD  TY ++I    K+G+
Sbjct: 469 MKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGL 528

Query: 182 VDEAFELFQTM 214
            DEA++LF+ M
Sbjct: 529 SDEAYDLFRKM 539


>ref|XP_002328355.1| predicted protein [Populus trichocarpa] gi|222838070|gb|EEE76435.1|
           predicted protein [Populus trichocarpa]
          Length = 608

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 36/74 (48%), Positives = 49/74 (66%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M  RGI P+VFTYN ++ G    G+  +A RLF EM GR ++PD  T  I++D  CK+GM
Sbjct: 254 MLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGM 313

Query: 182 VDEAFELFQTMIER 223
           V EA  +F+TM E+
Sbjct: 314 VSEARLVFETMTEK 327



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 31/74 (41%), Positives = 48/74 (64%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M  + +NPD  TY+ L+ GL   G+ K+A+ +F EM   G+LP+  TY I++D  CK G 
Sbjct: 394 MYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGH 453

Query: 182 VDEAFELFQTMIER 223
           +DEA +L ++M E+
Sbjct: 454 LDEALKLLKSMQEK 467



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 30/74 (40%), Positives = 45/74 (60%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M +RG  P+V +YN +I+GL  +G    A+ +F +M   G  PD  TY  IID+ CKD +
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRL 243

Query: 182 VDEAFELFQTMIER 223
           V++A E    M++R
Sbjct: 244 VNDAMEFLSEMLDR 257



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/71 (45%), Positives = 44/71 (61%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M + GI+P   T+NALI+GL   GK K+A+ LFNEM  RG  P+  +Y  II+  CK G 
Sbjct: 149 MFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGN 208

Query: 182 VDEAFELFQTM 214
              A ++F+ M
Sbjct: 209 TSMAVDVFKKM 219



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/74 (35%), Positives = 42/74 (56%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M+++G+ P++ TYNAL+DG        +A ++F  M  +G  P  H+Y I+I+  CK   
Sbjct: 324 MTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRR 383

Query: 182 VDEAFELFQTMIER 223
           +DEA  L   M  +
Sbjct: 384 MDEAKSLLAEMYHK 397


>ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
           gi|10176973|dbj|BAB10191.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737318|dbj|BAF00605.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332004938|gb|AED92321.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/74 (51%), Positives = 49/74 (66%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M + GI PDV TYN+LI GL +SG+  DA R+ + MT R I PD  T+  +IDAC K+G 
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGR 271

Query: 182 VDEAFELFQTMIER 223
           V EA E ++ MI R
Sbjct: 272 VSEAEEFYEEMIRR 285



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M++R I PDVFT+NALID     G+  +A   + EM  R + PD  TY ++I   C    
Sbjct: 247 MTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306

Query: 182 VDEAFELFQTMIER 223
           +DEA E+F  M+ +
Sbjct: 307 LDEAEEMFGFMVSK 320



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/72 (38%), Positives = 45/72 (62%)
 Frame = +2

Query: 2   MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPDGHTYGIIIDACCKDGM 181
           M  +G  PDV TY+ LI+G   S K +  ++LF EM+ RG++ +  TY I+I   C+ G 
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376

Query: 182 VDEAFELFQTMI 217
           ++ A E+F+ M+
Sbjct: 377 LNVAEEIFRRMV 388