BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003187
         (1258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530660.1| DNA mismatch repair protein mutS, putative [...   619   e-175
ref|XP_003538746.1| PREDICTED: mutS protein homolog 4-like [Glyc...   600   e-169
ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-...   595   e-167
ref|XP_003563107.1| PREDICTED: mutS protein homolog 4-like [Brac...   588   e-166
gb|AFP73610.1| mutS-like protein 4 [Hordeum vulgare subsp. vulgare]   583   e-164

>ref|XP_002530660.1| DNA mismatch repair protein mutS, putative [Ricinus communis]
            gi|223529793|gb|EEF31729.1| DNA mismatch repair protein
            mutS, putative [Ricinus communis]
          Length = 553

 Score =  619 bits (1595), Expect = e-175
 Identities = 301/377 (79%), Positives = 340/377 (90%)
 Frame = -2

Query: 1257 DIKGRLPSKFIQVVKHGNNVHCSTLELASLNVRNKSAAAECYTRTEICLEALMDGIRKDV 1078
            DI+G+LPSKFIQV+KHGNN+HCSTLELASLNVRN+SAA ECY RTE+CLEAL+D IR+D 
Sbjct: 177  DIQGKLPSKFIQVLKHGNNIHCSTLELASLNVRNRSAAEECYIRTEVCLEALLDAIREDA 236

Query: 1077 SVXXXXXXXXXXLDMIVNSFAHTISTKPVDQYTRPEFTENGPLAIDAGRHPILESLHTDF 898
            S           LDM+VNSFAHTISTK VD+YTRPEFT +GPLAIDAGRHPILES+H DF
Sbjct: 237  SALTLLAEVLCLLDMLVNSFAHTISTKLVDRYTRPEFTSSGPLAIDAGRHPILESIHNDF 296

Query: 897  TPNNVFLSEASNMVIVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFSSLRVADRIFTR 718
             PNN+F+SEASNMVIVMGPNMSGKSTYLQQVCL+VILAQIGCYVPARF ++R+ DRIFTR
Sbjct: 297  VPNNLFVSEASNMVIVMGPNMSGKSTYLQQVCLIVILAQIGCYVPARFLTIRIVDRIFTR 356

Query: 717  MGTGDNLESNSSTFMTEMKETAFIMQNVSSRSLIVMDELGRATSSSDGLAIAWSCCEHLL 538
            MG+ DNLESNSSTFMTEMKETAFIMQNVS RSLI+MDELGRATSSSDG +IAWSCCEHLL
Sbjct: 357  MGSVDNLESNSSTFMTEMKETAFIMQNVSQRSLIIMDELGRATSSSDGFSIAWSCCEHLL 416

Query: 537  SLKAYTIFATHMENLSELATVYPNVKILHFDVDVKNNRLDFKFHLNDGPKYIPHYGLLLA 358
            SLKAYTIFATHMENLSELAT+YPNVK+LH DV VKNNRLDFKF L DGP+++PHYGLLLA
Sbjct: 417  SLKAYTIFATHMENLSELATIYPNVKLLHLDVTVKNNRLDFKFQLKDGPRHVPHYGLLLA 476

Query: 357  GVAGLPCSVIESAKSITSKITEKDVRRMEVNCKQYQSVQLAYRVAQRLICLKYSSQDEGS 178
             VAGLP SVIE+A+SITSKI EK++ +MEV+C QY+ +Q+ Y VAQRLICLKYSSQDE S
Sbjct: 477  EVAGLPSSVIETARSITSKIKEKEITQMEVHCHQYRQLQMIYHVAQRLICLKYSSQDEDS 536

Query: 177  IREALQNLKESYIDGRL 127
            IR+ALQNLKESY+DG++
Sbjct: 537  IRQALQNLKESYMDGKI 553


>ref|XP_003538746.1| PREDICTED: mutS protein homolog 4-like [Glycine max]
          Length = 794

 Score =  600 bits (1547), Expect = e-169
 Identities = 295/377 (78%), Positives = 334/377 (88%)
 Frame = -2

Query: 1257 DIKGRLPSKFIQVVKHGNNVHCSTLELASLNVRNKSAAAECYTRTEICLEALMDGIRKDV 1078
            +I+G+LPSKFIQVVKHGNN+ CS+LELASLN RNKSAAAECYTRTE+CLE LMD IR++V
Sbjct: 416  NIQGKLPSKFIQVVKHGNNIRCSSLELASLNARNKSAAAECYTRTEVCLEELMDDIRENV 475

Query: 1077 SVXXXXXXXXXXLDMIVNSFAHTISTKPVDQYTRPEFTENGPLAIDAGRHPILESLHTDF 898
            SV          LDMIVNSFAH ISTKPVD+YTRPEFTENGPLAID+GRHPILES+H DF
Sbjct: 476  SVLTLLAEVLCLLDMIVNSFAHMISTKPVDRYTRPEFTENGPLAIDSGRHPILESIHNDF 535

Query: 897  TPNNVFLSEASNMVIVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFSSLRVADRIFTR 718
              NN+FL+EASNM IVMGPNMSGKSTYLQQVCL+VILAQ+GCYVPARFS++RV DR+FTR
Sbjct: 536  VANNIFLTEASNMAIVMGPNMSGKSTYLQQVCLIVILAQVGCYVPARFSTVRVVDRMFTR 595

Query: 717  MGTGDNLESNSSTFMTEMKETAFIMQNVSSRSLIVMDELGRATSSSDGLAIAWSCCEHLL 538
            MG  DNLESNSSTFMTEMKETAFIMQNVS RSLIVMDELGRATSSSDG AIAWSCCEHLL
Sbjct: 596  MGAVDNLESNSSTFMTEMKETAFIMQNVSQRSLIVMDELGRATSSSDGFAIAWSCCEHLL 655

Query: 537  SLKAYTIFATHMENLSELATVYPNVKILHFDVDVKNNRLDFKFHLNDGPKYIPHYGLLLA 358
            SLK YT+FATHMEN+SEL T+YPNVKILHFDV++KNN LDFKF L +G K IPHYGLLLA
Sbjct: 656  SLKTYTVFATHMENISELVTMYPNVKILHFDVELKNNHLDFKFQLKEGSKRIPHYGLLLA 715

Query: 357  GVAGLPCSVIESAKSITSKITEKDVRRMEVNCKQYQSVQLAYRVAQRLICLKYSSQDEGS 178
             VAGLP SV+E+A+ ITS+I+EK+V+RMEVNC Q+ S+Q AY VAQRL+CLKY +QDE +
Sbjct: 716  EVAGLPSSVVETARMITSRISEKEVKRMEVNCLQHHSIQKAYHVAQRLLCLKYCNQDEDT 775

Query: 177  IREALQNLKESYIDGRL 127
            IR+AL+NLKES I  +L
Sbjct: 776  IRQALRNLKESCIKEKL 792


>ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-like, partial [Cucumis
            sativus]
          Length = 770

 Score =  595 bits (1533), Expect = e-167
 Identities = 290/377 (76%), Positives = 332/377 (88%)
 Frame = -2

Query: 1257 DIKGRLPSKFIQVVKHGNNVHCSTLELASLNVRNKSAAAECYTRTEICLEALMDGIRKDV 1078
            D++G+LP+KFIQV+KHGNN+ CSTLELASLNVRNKSAA ECY RTEICLE L+D IR+DV
Sbjct: 394  DVQGKLPNKFIQVLKHGNNIRCSTLELASLNVRNKSAAGECYIRTEICLEGLVDAIREDV 453

Query: 1077 SVXXXXXXXXXXLDMIVNSFAHTISTKPVDQYTRPEFTENGPLAIDAGRHPILESLHTDF 898
            S+          LDMIVNSFAHTISTKPVD+YTRP FTENGP+AI+A RHPILES+H DF
Sbjct: 454  SMLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPNFTENGPMAIEAARHPILESIHNDF 513

Query: 897  TPNNVFLSEASNMVIVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFSSLRVADRIFTR 718
              N++FLSEASNM+IVMGPNMSGKSTYLQQ+CL+VILAQIGCYVPA FS+LRV DRIFTR
Sbjct: 514  VANSIFLSEASNMIIVMGPNMSGKSTYLQQMCLLVILAQIGCYVPAHFSTLRVVDRIFTR 573

Query: 717  MGTGDNLESNSSTFMTEMKETAFIMQNVSSRSLIVMDELGRATSSSDGLAIAWSCCEHLL 538
            MGT D+LESNSSTFMTEMKETAF+MQNVS RSL+V+DELGRATSSSDG AIAWSCCE+LL
Sbjct: 574  MGTDDSLESNSSTFMTEMKETAFVMQNVSQRSLVVVDELGRATSSSDGFAIAWSCCEYLL 633

Query: 537  SLKAYTIFATHMENLSELATVYPNVKILHFDVDVKNNRLDFKFHLNDGPKYIPHYGLLLA 358
            +LKAYTIFATHME LSELAT+YPNVKILHF VD++N+RLDFKF L DG +++PHYGLLLA
Sbjct: 634  TLKAYTIFATHMEGLSELATIYPNVKILHFHVDIRNHRLDFKFQLKDGIRHVPHYGLLLA 693

Query: 357  GVAGLPCSVIESAKSITSKITEKDVRRMEVNCKQYQSVQLAYRVAQRLICLKYSSQDEGS 178
             VAGLP SVIE+A+ ITS+I EK+ RRME+N  QY  +++ Y VAQRLICLKYSS DE S
Sbjct: 694  EVAGLPSSVIETARDITSRIKEKEERRMEINHLQYHPIRMTYNVAQRLICLKYSSHDEDS 753

Query: 177  IREALQNLKESYIDGRL 127
            +REAL+NLKE YI GRL
Sbjct: 754  VREALRNLKEGYISGRL 770


>ref|XP_003563107.1| PREDICTED: mutS protein homolog 4-like [Brachypodium distachyon]
          Length = 726

 Score =  588 bits (1517), Expect = e-166
 Identities = 283/377 (75%), Positives = 337/377 (89%)
 Frame = -2

Query: 1257 DIKGRLPSKFIQVVKHGNNVHCSTLELASLNVRNKSAAAECYTRTEICLEALMDGIRKDV 1078
            DI G+LPSKFIQVV+HG NVHCS+ ELASLN RNKSAAAEC+ RTE+CLE L+  IR+D+
Sbjct: 343  DITGKLPSKFIQVVRHGKNVHCSSFELASLNARNKSAAAECFLRTELCLEGLISEIREDI 402

Query: 1077 SVXXXXXXXXXXLDMIVNSFAHTISTKPVDQYTRPEFTENGPLAIDAGRHPILESLHTDF 898
             +          LDMIVNSFA+TISTKPVD+YTRPEFT++GP+AI+AGRHPILE LHTDF
Sbjct: 403  GILTLLAEVLCLLDMIVNSFANTISTKPVDRYTRPEFTDDGPMAINAGRHPILEGLHTDF 462

Query: 897  TPNNVFLSEASNMVIVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFSSLRVADRIFTR 718
             PNN+FLSEASNMV+VMGPNMSGKSTYLQQ+CL+VILAQ+GCYVPA+F+SLRV DRIFTR
Sbjct: 463  VPNNIFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQVGCYVPAQFASLRVVDRIFTR 522

Query: 717  MGTGDNLESNSSTFMTEMKETAFIMQNVSSRSLIVMDELGRATSSSDGLAIAWSCCEHLL 538
            +GTGDN+E+NSSTFMTEMKETAFIMQNVSS+SL+V+DELGRATSSSDGLAIAWSCCEHLL
Sbjct: 523  IGTGDNVENNSSTFMTEMKETAFIMQNVSSKSLVVVDELGRATSSSDGLAIAWSCCEHLL 582

Query: 537  SLKAYTIFATHMENLSELATVYPNVKILHFDVDVKNNRLDFKFHLNDGPKYIPHYGLLLA 358
            SLKAYT+FATHME LSELAT+YPNVK LHF+V+++NNRLDFKF L DG + +PHYGLLLA
Sbjct: 583  SLKAYTVFATHMEGLSELATMYPNVKTLHFEVNLRNNRLDFKFQLKDGLRRVPHYGLLLA 642

Query: 357  GVAGLPCSVIESAKSITSKITEKDVRRMEVNCKQYQSVQLAYRVAQRLICLKYSSQDEGS 178
             VAGLP SV+++A +ITS+ITE+++ RM+ NC+QY+ +Q+AY+ AQRLICLKYS+Q +  
Sbjct: 643  RVAGLPASVVDTATNITSRITEQEMVRMDANCEQYRPLQMAYQAAQRLICLKYSNQGDEY 702

Query: 177  IREALQNLKESYIDGRL 127
            IREALQ+LKESY  G+L
Sbjct: 703  IREALQDLKESYAAGKL 719


>gb|AFP73610.1| mutS-like protein 4 [Hordeum vulgare subsp. vulgare]
          Length = 720

 Score =  583 bits (1503), Expect = e-164
 Identities = 283/377 (75%), Positives = 335/377 (88%)
 Frame = -2

Query: 1257 DIKGRLPSKFIQVVKHGNNVHCSTLELASLNVRNKSAAAECYTRTEICLEALMDGIRKDV 1078
            DI  +LP+KFIQVV+HG NVHCS+ ELASLNVRNKSAAAEC+ RTE+CLE L+  IR+D+
Sbjct: 343  DITEKLPNKFIQVVRHGKNVHCSSFELASLNVRNKSAAAECFLRTELCLEGLISEIREDI 402

Query: 1077 SVXXXXXXXXXXLDMIVNSFAHTISTKPVDQYTRPEFTENGPLAIDAGRHPILESLHTDF 898
             +          LDMIVNSFA+TISTKPVD+YTRPEFT++GP+AI+AGRHPILESLHTDF
Sbjct: 403  CILTLLAEVLCLLDMIVNSFAYTISTKPVDRYTRPEFTDDGPMAINAGRHPILESLHTDF 462

Query: 897  TPNNVFLSEASNMVIVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFSSLRVADRIFTR 718
             PNN+FLSEASNMV+VMGPNMSGKSTYLQQ+CL+VILAQ+GCYVPA+F+SLRV DRIFTR
Sbjct: 463  VPNNIFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQVGCYVPAQFASLRVVDRIFTR 522

Query: 717  MGTGDNLESNSSTFMTEMKETAFIMQNVSSRSLIVMDELGRATSSSDGLAIAWSCCEHLL 538
            +GTGDN+E+NSSTFMTEMKETAFIMQNVSSRSL+V+DELGRATSSSDGLAIAWSCCEHLL
Sbjct: 523  IGTGDNVENNSSTFMTEMKETAFIMQNVSSRSLVVVDELGRATSSSDGLAIAWSCCEHLL 582

Query: 537  SLKAYTIFATHMENLSELATVYPNVKILHFDVDVKNNRLDFKFHLNDGPKYIPHYGLLLA 358
            SLK YT+FATHME LSELAT+YPNVK+LHF+VD++N+RLDFKF L DG + +PHYGLLLA
Sbjct: 583  SLKGYTVFATHMEGLSELATMYPNVKVLHFEVDLRNSRLDFKFLLKDGLRRVPHYGLLLA 642

Query: 357  GVAGLPCSVIESAKSITSKITEKDVRRMEVNCKQYQSVQLAYRVAQRLICLKYSSQDEGS 178
             VAGLP SVI++A SITS+ITE+++ RM+ NC QY+ +++AY+ AQRLICLKYS+Q +  
Sbjct: 643  RVAGLPASVIDTATSITSRITEQEMVRMDANCVQYKPLRMAYQAAQRLICLKYSNQGDDY 702

Query: 177  IREALQNLKESYIDGRL 127
             REALQ+LKESY  G L
Sbjct: 703  NREALQDLKESYAAGNL 719