BLASTX nr result
ID: Coptis23_contig00003144
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00003144
(508 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281825.1| PREDICTED: photosystem I reaction center sub... 202 3e-50
gb|AAM66066.1| putative photosystem I reaction center subunit II... 199 1e-49
ref|NP_171812.1| photosystem I reaction center subunit II-2 [Ara... 199 1e-49
ref|NP_192186.1| photosystem I reaction center subunit II-1 [Ara... 199 1e-49
ref|XP_002892148.1| hypothetical protein ARALYDRAFT_887465 [Arab... 199 1e-49
>ref|XP_002281825.1| PREDICTED: photosystem I reaction center subunit II, chloroplastic
isoform 1 [Vitis vinifera]
gi|359477510|ref|XP_003631987.1| PREDICTED: photosystem
I reaction center subunit II, chloroplastic isoform 2
[Vitis vinifera] gi|359477512|ref|XP_003631988.1|
PREDICTED: photosystem I reaction center subunit II,
chloroplastic isoform 3 [Vitis vinifera]
gi|359477514|ref|XP_003631989.1| PREDICTED: photosystem
I reaction center subunit II, chloroplastic isoform 4
[Vitis vinifera] gi|147800882|emb|CAN62373.1|
hypothetical protein VITISV_036477 [Vitis vinifera]
Length = 204
Score = 202 bits (513), Expect = 3e-50
Identities = 95/101 (94%), Positives = 99/101 (98%)
Frame = +1
Query: 1 QVFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPK 180
Q+FEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPK
Sbjct: 104 QIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPK 163
Query: 181 DGVYPEKVNPGREGVGINARSIGKNVNPIEVKFTGKQSYDL 303
DGVYPEKVNPGR+GVG+N RSIGKNVNPIEVKFTGKQ+YDL
Sbjct: 164 DGVYPEKVNPGRQGVGVNFRSIGKNVNPIEVKFTGKQAYDL 204
>gb|AAM66066.1| putative photosystem I reaction center subunit II precursor
[Arabidopsis thaliana]
Length = 208
Score = 199 bits (507), Expect = 1e-49
Identities = 94/101 (93%), Positives = 98/101 (97%)
Frame = +1
Query: 1 QVFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPK 180
Q+FEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPK
Sbjct: 108 QIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPK 167
Query: 181 DGVYPEKVNPGREGVGINARSIGKNVNPIEVKFTGKQSYDL 303
DGVYPEK NPGREGVG+N RSIGKNV+PIEVKFTGKQSYDL
Sbjct: 168 DGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>ref|NP_171812.1| photosystem I reaction center subunit II-2 [Arabidopsis thaliana]
gi|38503234|sp|Q9SA56.1|PSAD2_ARATH RecName:
Full=Photosystem I reaction center subunit II-2,
chloroplastic; AltName: Full=Photosystem I 20 kDa
subunit 2; Short=PSI-D2; Flags: Precursor
gi|4587564|gb|AAD25795.1|AC006550_3 Strong similarity to
gb|X14017 photosystem I reaction centre subunit II
precursor (psaD) from Spinacia oleracea. ESTs gb|R30423,
gb|T42998, gb|Z18178, gb|T14133, gb|N65521, gb|T42498,
gb|T41918, gb|N38024, gb|R65109, gb|T43849, gb|AA394388,
gb|T20925 and gb|N65696 come from this gene [Arabidopsis
thaliana] gi|11692912|gb|AAG40059.1|AF324708_1 At1g03130
[Arabidopsis thaliana]
gi|12083234|gb|AAG48776.1|AF332413_1 putative
photosystem I reaction center subunit II precursor
[Arabidopsis thaliana] gi|14517460|gb|AAK62620.1|
At1g03130/F10O3_4 [Arabidopsis thaliana]
gi|21555282|gb|AAM63823.1| putative photosystem I
reaction center subunit II precursor [Arabidopsis
thaliana] gi|23507779|gb|AAN38693.1| At1g03130/F10O3_4
[Arabidopsis thaliana] gi|332189413|gb|AEE27534.1|
photosystem I reaction center subunit II-2 [Arabidopsis
thaliana]
Length = 204
Score = 199 bits (507), Expect = 1e-49
Identities = 94/101 (93%), Positives = 98/101 (97%)
Frame = +1
Query: 1 QVFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPK 180
Q+FEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPK
Sbjct: 104 QIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPK 163
Query: 181 DGVYPEKVNPGREGVGINARSIGKNVNPIEVKFTGKQSYDL 303
DGVYPEK NPGREGVG+N RSIGKNV+PIEVKFTGKQSYDL
Sbjct: 164 DGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>ref|NP_192186.1| photosystem I reaction center subunit II-1 [Arabidopsis thaliana]
gi|38503230|sp|Q9S7H1.1|PSAD1_ARATH RecName:
Full=Photosystem I reaction center subunit II-1,
chloroplastic; AltName: Full=Photosystem I 20 kDa
subunit 1; Short=PSI-D1; Flags: Precursor
gi|11692846|gb|AAG40026.1|AF324675_1 AT4g02770
[Arabidopsis thaliana]
gi|11908080|gb|AAG41469.1|AF326887_1 putative
photosystem I reaction center subunit II precursor
[Arabidopsis thaliana]
gi|14488084|gb|AAK63862.1|AF389290_1 AT4g02770/T5J8_7
[Arabidopsis thaliana] gi|4263525|gb|AAD15351.1|
putative photosystem I reaction center subunit II
precursor [Arabidopsis thaliana]
gi|5732199|emb|CAB52676.1| photosystem I subunit II
precursor [Arabidopsis thaliana]
gi|7269762|emb|CAB77762.1| putative photosystem I
reaction center subunit II precursor [Arabidopsis
thaliana] gi|17064872|gb|AAL32590.1| Unknown protein
[Arabidopsis thaliana] gi|20148685|gb|AAM10233.1|
unknown protein [Arabidopsis thaliana]
gi|20908086|gb|AAM26726.1| AT4g02770/T5J8_7 [Arabidopsis
thaliana] gi|21281091|gb|AAM44987.1| putative
photosystem I reaction center subunit II precursor
[Arabidopsis thaliana] gi|332656828|gb|AEE82228.1|
photosystem I reaction center subunit II-1 [Arabidopsis
thaliana]
Length = 208
Score = 199 bits (507), Expect = 1e-49
Identities = 94/101 (93%), Positives = 98/101 (97%)
Frame = +1
Query: 1 QVFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPK 180
Q+FEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPK
Sbjct: 108 QIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPK 167
Query: 181 DGVYPEKVNPGREGVGINARSIGKNVNPIEVKFTGKQSYDL 303
DGVYPEK NPGREGVG+N RSIGKNV+PIEVKFTGKQSYDL
Sbjct: 168 DGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>ref|XP_002892148.1| hypothetical protein ARALYDRAFT_887465 [Arabidopsis lyrata subsp.
lyrata] gi|297337990|gb|EFH68407.1| hypothetical protein
ARALYDRAFT_887465 [Arabidopsis lyrata subsp. lyrata]
Length = 205
Score = 199 bits (507), Expect = 1e-49
Identities = 94/101 (93%), Positives = 98/101 (97%)
Frame = +1
Query: 1 QVFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPK 180
Q+FEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPK
Sbjct: 105 QIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPK 164
Query: 181 DGVYPEKVNPGREGVGINARSIGKNVNPIEVKFTGKQSYDL 303
DGVYPEK NPGREGVG+N RSIGKNV+PIEVKFTGKQSYDL
Sbjct: 165 DGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 205