BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003140
         (1868 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152814.1| PREDICTED: splicing factor 3B subunit 2-like...   483   e-143
ref|XP_003543065.1| PREDICTED: splicing factor 3B subunit 2-like...   484   e-142
ref|XP_003545890.1| PREDICTED: splicing factor 3B subunit 2-like...   484   e-142
ref|XP_003541544.1| PREDICTED: splicing factor 3B subunit 2-like...   485   e-142
ref|XP_003593554.1| Splicing factor 3B subunit [Medicago truncat...   484   e-142

>ref|XP_004152814.1| PREDICTED: splicing factor 3B subunit 2-like [Cucumis sativus]
            gi|449515207|ref|XP_004164641.1| PREDICTED: splicing
            factor 3B subunit 2-like [Cucumis sativus]
          Length = 580

 Score =  483 bits (1244), Expect(2) = e-143
 Identities = 278/502 (55%), Positives = 298/502 (59%), Gaps = 11/502 (2%)
 Frame = +2

Query: 26   MIAEATNPNGV-SNGDL---KNXXXXXXXXXXXXXXXXXXXXXEENVNIILKTESRXXXX 193
            M  E + PNGV SNGDL    N                     ++N       E+     
Sbjct: 1    MTVEVSQPNGVVSNGDLDLNSNPKSGAVKKSRENERRRRRRKQKKNQKASKVKEAAGGED 60

Query: 194  XXA-----KENADPQQFVENVEIEYVAEKADLEGSSYEEFAKVFEKFTFTVTSALXXXXX 358
              A     KEN DP Q VE VEIEY+ EKA+L+ S  E+F KVFEKF+F+  +       
Sbjct: 61   SDASGDDTKENDDPLQVVEKVEIEYIPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENED 120

Query: 359  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRMKIAELKQVSSRPDV 538
                                                     LQRRMKIAELKQ+ SRPDV
Sbjct: 121  KDESAQNATSKKSDSDSDDEEHDNQQKEKGLSNKKKK----LQRRMKIAELKQICSRPDV 176

Query: 539  VEVWDATAADPKLLVYLKSYRNSVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIE 718
            VE+WDATAADPKLLVYLKSYRN+VPVPRHW QKRKFLQGKRGIEKQPFQLPDFIAATGIE
Sbjct: 177  VEIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIE 236

Query: 719  KIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYXXXXXXXXXXXXXXXXXXXXXXXXXX 898
            KIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDY                          
Sbjct: 237  KIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEG 296

Query: 899  XXXXXXXXXXXXXXXXXXXXXXXXXXXVKLREMKPGMLSRELKEALGMPEGAPPPWLINM 1078
                                       VKLREMKPGMLS+ELKEALGMPEGAPPPWLINM
Sbjct: 297  KEFE-----------------------VKLREMKPGMLSQELKEALGMPEGAPPPWLINM 333

Query: 1079 QRYGPPPSYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXX 1258
            QRYGPPPSYP LKIPGLNAPIP GASFGYHPGGWGKPPVDE GRPLYGDVFG        
Sbjct: 334  QRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQAN 393

Query: 1259 XXXXPVDRSKHWG--XXXXXXXXXXXXXXXXXXXXXXXGIQSVDSLSSTPTGVETPDVID 1432
                PVD++KHWG                         GI+SVDS SSTPTGVETPDVID
Sbjct: 394  YEEEPVDKTKHWGDLEEEEEEEVEEEDEEELEEEEMEDGIESVDSQSSTPTGVETPDVID 453

Query: 1433 LRKQQRKEPEKPLYQVLEEKEE 1498
            LRKQQRKEP++PLYQVLEEKEE
Sbjct: 454  LRKQQRKEPDRPLYQVLEEKEE 475



 Score = 52.4 bits (124), Expect(2) = e-143
 Identities = 32/59 (54%), Positives = 33/59 (55%)
 Frame = +1

Query: 1615 KRVDLLRGQKADKVDVTLRPXXXXXXXXXXXXXXXXXXXXXXXXXXSQREDFSDMVAEN 1791
            KRVDLLRGQK+DKVDVTLRP                          SQREDFSDMVAEN
Sbjct: 502  KRVDLLRGQKSDKVDVTLRP--EELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAEN 558


>ref|XP_003543065.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]
          Length = 575

 Score =  484 bits (1247), Expect(2) = e-142
 Identities = 266/438 (60%), Positives = 279/438 (63%), Gaps = 5/438 (1%)
 Frame = +2

Query: 200  AKENADPQQFVENVEIEYVAEKADLEGSSYEEFAKVFEKFTFTVTSALXXXXXXXXXXXX 379
            AKEN D +Q VE +EIEYV EKA+L     EEF K+FEKFTFT  +AL            
Sbjct: 59   AKENNDSKQLVEQIEIEYVPEKAELVEGMDEEFRKIFEKFTFTDATALEDTDKKDGSEEN 118

Query: 380  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRMKIAELKQVSSRPDVVEVWDAT 559
                                              LQRRMKIAELKQ+  RPDVVEVWDAT
Sbjct: 119  AATNKKANSDSEEEENDNEQKEKGISNKKKK---LQRRMKIAELKQICLRPDVVEVWDAT 175

Query: 560  AADPKLLVYLKSYRNSVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYI 739
            A+DPKLLV+LKSYRN+VPVPRHW QKRKFLQGKRGIEK PFQLPDFIAATGIEKIRQAYI
Sbjct: 176  ASDPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKPPFQLPDFIAATGIEKIRQAYI 235

Query: 740  EKEDSKKLKQKQRERMQPKMGKMDIDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 919
            EKEDSKKLKQKQRERMQPKMGKMDIDY                                 
Sbjct: 236  EKEDSKKLKQKQRERMQPKMGKMDIDY-----------------------QVLHDAFFKY 272

Query: 920  XXXXXXXXXXXXXXXXXXXXVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQRYGPPP 1099
                                VKLREMKPGMLS ELKEALGMPEG+PPPWLINMQRYGPPP
Sbjct: 273  QTKPKLTSLGDLYHEGKEFEVKLREMKPGMLSHELKEALGMPEGSPPPWLINMQRYGPPP 332

Query: 1100 SYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXXXXXPVD 1279
            SYPHLKIPGLNAPIP GASFGYHPGGWGKPPVDE GRPLYGDVFG            PVD
Sbjct: 333  SYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPVD 392

Query: 1280 RSKHWG-----XXXXXXXXXXXXXXXXXXXXXXXGIQSVDSLSSTPTGVETPDVIDLRKQ 1444
            ++KHWG                            GIQSVDSLSSTPTGVETPDVIDLRKQ
Sbjct: 393  KTKHWGDLEEEEEEEEEEEEEEEEEEMEEEELEAGIQSVDSLSSTPTGVETPDVIDLRKQ 452

Query: 1445 QRKEPEKPLYQVLEEKEE 1498
            QRKEPE+PLYQVLEEKEE
Sbjct: 453  QRKEPERPLYQVLEEKEE 470



 Score = 50.4 bits (119), Expect(2) = e-142
 Identities = 31/59 (52%), Positives = 32/59 (54%)
 Frame = +1

Query: 1615 KRVDLLRGQKADKVDVTLRPXXXXXXXXXXXXXXXXXXXXXXXXXXSQREDFSDMVAEN 1791
            KRVDLLRGQK DKVDVTL+P                          SQREDFSDMVAEN
Sbjct: 497  KRVDLLRGQKTDKVDVTLQP--EELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAEN 553


>ref|XP_003545890.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]
          Length = 575

 Score =  484 bits (1246), Expect(2) = e-142
 Identities = 266/438 (60%), Positives = 280/438 (63%), Gaps = 5/438 (1%)
 Frame = +2

Query: 200  AKENADPQQFVENVEIEYVAEKADLEGSSYEEFAKVFEKFTFTVTSALXXXXXXXXXXXX 379
            AKEN D +Q VE +EIEYV EKA+L     EEF K+FEKFTFT  +AL            
Sbjct: 59   AKENDDSKQLVEQIEIEYVPEKAELVEGMDEEFRKIFEKFTFTDATALEDTDKKDGSEEN 118

Query: 380  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRMKIAELKQVSSRPDVVEVWDAT 559
                                              LQRRMKIA+LKQ+ SRPDVVEVWDAT
Sbjct: 119  AATNKKADSDSEEEENDNEQKEKGISNKKKK---LQRRMKIAQLKQICSRPDVVEVWDAT 175

Query: 560  AADPKLLVYLKSYRNSVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYI 739
            A+DPKLLV+LKSYRN+VPVPRHW QKRKFLQGKRGIEK  FQLPDFIAATGIEKIRQAYI
Sbjct: 176  ASDPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKPAFQLPDFIAATGIEKIRQAYI 235

Query: 740  EKEDSKKLKQKQRERMQPKMGKMDIDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 919
            EKEDSKKLKQKQRERMQPKMGKMDIDY                                 
Sbjct: 236  EKEDSKKLKQKQRERMQPKMGKMDIDY-----------------------QVLHDAFFKY 272

Query: 920  XXXXXXXXXXXXXXXXXXXXVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQRYGPPP 1099
                                VKLREMKPGMLS+ELKEALGMPEGAPPPWLINMQRYGPPP
Sbjct: 273  QTKPKLTSLGDLYHEGKEFEVKLREMKPGMLSQELKEALGMPEGAPPPWLINMQRYGPPP 332

Query: 1100 SYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXXXXXPVD 1279
            SYPHLKIPGLNAPIP GASFGYHPGGWGKPPVDE GRPLYGDVFG            PVD
Sbjct: 333  SYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPVD 392

Query: 1280 RSKHWG-----XXXXXXXXXXXXXXXXXXXXXXXGIQSVDSLSSTPTGVETPDVIDLRKQ 1444
            ++KHWG                            GIQSVDSLSSTPTGVETPDVIDLRKQ
Sbjct: 393  KTKHWGDLEEEEEEEEEEEEEEEEEEMEEEELEAGIQSVDSLSSTPTGVETPDVIDLRKQ 452

Query: 1445 QRKEPEKPLYQVLEEKEE 1498
            QRKEPE+PLYQVLEEKEE
Sbjct: 453  QRKEPERPLYQVLEEKEE 470



 Score = 50.4 bits (119), Expect(2) = e-142
 Identities = 31/59 (52%), Positives = 32/59 (54%)
 Frame = +1

Query: 1615 KRVDLLRGQKADKVDVTLRPXXXXXXXXXXXXXXXXXXXXXXXXXXSQREDFSDMVAEN 1791
            KRVDLLRGQK DKVDVTL+P                          SQREDFSDMVAEN
Sbjct: 497  KRVDLLRGQKTDKVDVTLQP--EELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAEN 553


>ref|XP_003541544.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]
          Length = 577

 Score =  485 bits (1248), Expect(2) = e-142
 Identities = 266/438 (60%), Positives = 278/438 (63%), Gaps = 5/438 (1%)
 Frame = +2

Query: 200  AKENADPQQFVENVEIEYVAEKADLEGSSYEEFAKVFEKFTFTVTSALXXXXXXXXXXXX 379
            A EN DPQQ VE VEIEYV E+A+L+    EEF K+FEKF+F     +            
Sbjct: 60   ATENTDPQQVVEQVEIEYVPERAELDEGLDEEFRKIFEKFSF---GEVTGSEDNDKKDES 116

Query: 380  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRMKIAELKQVSSRPDVVEVWDAT 559
                                              LQRRMKIAELKQ+ SRPDVVEVWDAT
Sbjct: 117  VENATTNKKADSDSEEEENDNEQKEKGISNKKKKLQRRMKIAELKQICSRPDVVEVWDAT 176

Query: 560  AADPKLLVYLKSYRNSVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYI 739
            A+DPKLLV+LKSYRN+VPVPRHW QKRKFLQGKRGIEK PFQLPDFIAATGIEKIRQAYI
Sbjct: 177  ASDPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKLPFQLPDFIAATGIEKIRQAYI 236

Query: 740  EKEDSKKLKQKQRERMQPKMGKMDIDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 919
            EKEDSKKLKQKQRERMQPKMGKMDIDY                                 
Sbjct: 237  EKEDSKKLKQKQRERMQPKMGKMDIDY-----------------------QVLHDAFFKY 273

Query: 920  XXXXXXXXXXXXXXXXXXXXVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQRYGPPP 1099
                                VKLREMKPGMLS ELKEALGMPEGAPPPWLINMQRYGPPP
Sbjct: 274  QTKPKLTSLGELYHEGKEFEVKLREMKPGMLSHELKEALGMPEGAPPPWLINMQRYGPPP 333

Query: 1100 SYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXXXXXPVD 1279
            SYPHLKIPGLNAPIP GASFGYHPGGWGKPPVDE GRPLYGDVFG            PVD
Sbjct: 334  SYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVHQQDQPNYEEEPVD 393

Query: 1280 RSKHWG-----XXXXXXXXXXXXXXXXXXXXXXXGIQSVDSLSSTPTGVETPDVIDLRKQ 1444
            ++KHWG                            GIQSVDSLSSTPTGVETPDVIDLRKQ
Sbjct: 394  KTKHWGDLEEEEEEEEEEEEEEEEEEMEEEELEAGIQSVDSLSSTPTGVETPDVIDLRKQ 453

Query: 1445 QRKEPEKPLYQVLEEKEE 1498
            QRKEPEKPLYQVLEEKEE
Sbjct: 454  QRKEPEKPLYQVLEEKEE 471



 Score = 48.5 bits (114), Expect(2) = e-142
 Identities = 30/59 (50%), Positives = 32/59 (54%)
 Frame = +1

Query: 1615 KRVDLLRGQKADKVDVTLRPXXXXXXXXXXXXXXXXXXXXXXXXXXSQREDFSDMVAEN 1791
            KRVDLLRGQK+DKVDVTL P                          +QREDFSDMVAEN
Sbjct: 498  KRVDLLRGQKSDKVDVTLLP--EELDAMENVLPAKYEEAREEEKLRNQREDFSDMVAEN 554


>ref|XP_003593554.1| Splicing factor 3B subunit [Medicago truncatula]
            gi|355482602|gb|AES63805.1| Splicing factor 3B subunit
            [Medicago truncatula]
          Length = 578

 Score =  484 bits (1245), Expect(2) = e-142
 Identities = 268/441 (60%), Positives = 280/441 (63%), Gaps = 8/441 (1%)
 Frame = +2

Query: 200  AKENADPQQFVENVEIEYVAEKADLEGSSYEEFAKVFEKFTFTVTSALXXXXXXXXXXXX 379
            AKEN DP+Q  E VEIEYV EK DL     EEF K+FEKF+FT  +A             
Sbjct: 50   AKENTDPKQVFEQVEIEYVPEKVDLYEGMDEEFRKIFEKFSFTEVAA-SEETDKKDVAEE 108

Query: 380  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRMKIAELKQVSSRPDVVEVWDAT 559
                                              LQRRMKIAELKQVSSRPDVVEVWDAT
Sbjct: 109  TAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRRMKIAELKQVSSRPDVVEVWDAT 168

Query: 560  AADPKLLVYLKSYRNSVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYI 739
            AADPKLLV+LKSYRN+VPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYI
Sbjct: 169  AADPKLLVFLKSYRNTVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYI 228

Query: 740  EKEDSKKLKQKQRERMQPKMGKMDIDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 919
            EKEDSKKLKQKQRERMQPKMGKMDIDY                                 
Sbjct: 229  EKEDSKKLKQKQRERMQPKMGKMDIDY-----------------------QVLHDAFFKY 265

Query: 920  XXXXXXXXXXXXXXXXXXXXVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQRYGPPP 1099
                                VKLREMKPGMLS +LKEALGMPEGAPPPWLINMQRYGPPP
Sbjct: 266  QTKPKLTSLGELYHEGKEFEVKLREMKPGMLSHDLKEALGMPEGAPPPWLINMQRYGPPP 325

Query: 1100 SYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXXXXXPVD 1279
            SYP LKIPGLNAPIP GASFGYHPGGWGKPPVDE GRPLYGDVFG            PVD
Sbjct: 326  SYPQLKIPGLNAPIPAGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPVD 385

Query: 1280 RSKHWG-------XXXXXXXXXXXXXXXXXXXXXXXGIQSVDSLSSTPTGVETPDVIDLR 1438
            ++KHWG                              G++SVDSLSSTPTGVETPDVIDLR
Sbjct: 386  KTKHWGDLEEEEEEEEEEEEEEEEEEEGMEEEYFEDGVKSVDSLSSTPTGVETPDVIDLR 445

Query: 1439 KQQR-KEPEKPLYQVLEEKEE 1498
            KQQR KEPE+PLYQVLEEKEE
Sbjct: 446  KQQRNKEPERPLYQVLEEKEE 466



 Score = 48.5 bits (114), Expect(2) = e-142
 Identities = 30/59 (50%), Positives = 32/59 (54%)
 Frame = +1

Query: 1615 KRVDLLRGQKADKVDVTLRPXXXXXXXXXXXXXXXXXXXXXXXXXXSQREDFSDMVAEN 1791
            KRVDLL+GQK+DKVDVTL P                          SQREDFSDMVAEN
Sbjct: 494  KRVDLLKGQKSDKVDVTLLP--EELEAMENVLQARYEEAREEEKLRSQREDFSDMVAEN 550