BLASTX nr result

ID: Coptis23_contig00003137 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003137
         (855 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL58282.1|AC068923_24 putative membrane-associated protein [...   121   2e-25
gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]                120   3e-25
gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]                120   3e-25
sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; ...   120   3e-25
dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]      120   4e-25

>gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  121 bits (303), Expect = 2e-25
 Identities = 76/247 (30%), Positives = 132/247 (53%), Gaps = 1/247 (0%)
 Frame = +3

Query: 3   EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
           E++ +FDLMV    KP  + Y  LIDGYCLAG++DEA+ L   + S GL P+T TY+TL+
Sbjct: 261 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 320

Query: 183 REACKVGGRSTSKMFSEDILDNGL-PPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGS 359
              CK+     + +  +++  +G+ P +ITY   L G++        AK+L + +  +G+
Sbjct: 321 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR-RTAAAKELYVRITESGT 379

Query: 360 PADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARS 539
             +  T+  ++  L K      A  +F +L +  + L+ R +NI I+   K G+ +EA+ 
Sbjct: 380 QIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 439

Query: 540 LLNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVV 719
           L       G+ PN++T+  + E  +  Q ++ E  ++ L M    C +D     ML  +V
Sbjct: 440 LFVAFSSNGLVPNYWTYRLMAENIIG-QGLLEELDQLFLSMEDNGCTVD---SGMLNFIV 495

Query: 720 RDVVVLG 740
           R+++  G
Sbjct: 496 RELLQRG 502



 Score = 66.2 bits (160), Expect = 9e-09
 Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 14/247 (5%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLLREACK---------- 197
           P  ++Y  +I+G+   G  D+A   +  +  +G++PD  TY++++   CK          
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSH 253

Query: 198 -VGGR--STSKMFSEDILDNGLPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSPAD 368
              GR   + K+F   +     P +ITY   + G      +DE  K LL  M + G   +
Sbjct: 254 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMK-LLSGMVSVGLKPN 312

Query: 369 TETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLN 548
           T T+  ++    K  ++  A  LF  +   G+  D   YNI ++   +T +   A+ L  
Sbjct: 313 TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 372

Query: 549 NMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVVRDV 728
            + E G      T+  ++ G   C+   N+  +  L+M    CL+D++ E    +++ D 
Sbjct: 373 RITESGTQIELSTYNIILHG--LCK---NKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 427

Query: 729 VV-LGRS 746
           ++ +GR+
Sbjct: 428 LLKVGRN 434


>gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  120 bits (302), Expect = 3e-25
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 1/251 (0%)
 Frame = +3

Query: 3    EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
            E++ +F+LMV    KP  + Y  LI+GYCLAG++DEA+ L   + S GL P+T TY+TL+
Sbjct: 494  ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553

Query: 183  REACKVGGRSTSKMFSEDILDNGL-PPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGS 359
               CK+     + +  +++  +G+ P +ITY   L G++        AK+L + +  +G+
Sbjct: 554  NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR-RTAAAKELYVRITESGT 612

Query: 360  PADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARS 539
              +  T+  ++  L K      A  +F +L +  + L+ R +NI I+   K G+ +EA+ 
Sbjct: 613  QIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672

Query: 540  LLNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVV 719
            L       G+ PN++T+  + E  +  Q ++ E  ++ L M    C +D     ML  +V
Sbjct: 673  LFVAFSSNGLVPNYWTYRLMAENIIG-QGLLEELDQLFLSMEDNGCTVD---SGMLNFIV 728

Query: 720  RDVVVLGRSTK 752
            R+++  G  T+
Sbjct: 729  RELLQRGEITR 739



 Score = 90.5 bits (223), Expect = 4e-16
 Identities = 61/220 (27%), Positives = 100/220 (45%)
 Frame = +3

Query: 3   EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
           +A  + + MV     P  + Y  ++ GYC +G+  EA+     +RS G+ PD  TY+ L+
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLM 308

Query: 183 REACKVGGRSTSKMFSEDILDNGLPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSP 362
              CK G    ++   + +   GL P IT   +L   Y       +   LL LM  NG  
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368

Query: 363 ADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSL 542
            D   F  ++ A    GK+  A  +F  +   G+  +   Y   I    K+G++E+A   
Sbjct: 369 PDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428

Query: 543 LNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKM 662
              M ++G+SP +  + +LI G  TC        E++L+M
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNK-WERAEELILEM 467



 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLLREACKVGGRSTSKMF 227
           P  ++Y  +I+G+   G  D+A   +  +  +G++PD  TY +++   CK      +   
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 228 SEDILDNG-LPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSPADTETFYAVMVALR 404
              ++ NG +P  +TY   L G Y      ++A   L  M+++G   D  T+  +M  L 
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHG-YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC 312

Query: 405 KAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNNMKEKGVSPNHF 584
           K G+   AR +F S+   G+  +   Y   ++ ++  G L E   LL+ M   G+ P+H+
Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372

Query: 585 TFIALI 602
            F  LI
Sbjct: 373 VFSILI 378



 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 4/194 (2%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILF---LNIRSKGLIPDTPTYTTLLREACKVGGRSTS 218
           P   +Y IL+ G C   R  EA+ L     + R  G  PD  +YTT++    K G    +
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 219 KMFSEDILDNG-LPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSPADTETFYAVMV 395
                ++LD G LP ++TY   +  +     +D +A ++L  M  NG   D  T+ +++ 
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD-KAMEVLNTMVKNGVMPDCMTYNSILH 274

Query: 396 ALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNNMKEKGVSP 575
               +G+   A      +  DG+  D   Y++ ++   K G+  EAR + ++M ++G+ P
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334

Query: 576 NHFTFIALIEGCLT 617
              T+  L++G  T
Sbjct: 335 EITTYGTLLQGYAT 348



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 58/249 (23%), Positives = 112/249 (44%), Gaps = 1/249 (0%)
 Frame = +3

Query: 3    EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
            +A   F+ M+     P  + Y  LI G C   + + A  L L +  +G+  +T  + +++
Sbjct: 424  DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 183  REACKVGGRSTSKMFSEDILDNGLPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSP 362
               CK G    S+   E ++  G+ P +    +L   Y L    ++A  LL  M + G  
Sbjct: 484  DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543

Query: 363  ADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSL 542
             +T T+  ++    K  ++  A  LF  +   G+  D   YNI ++   +T +   A+ L
Sbjct: 544  PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 603

Query: 543  LNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVVR 722
               + E G      T+  ++ G   C+   N+  +  L+M    CL+D++ E    +++ 
Sbjct: 604  YVRITESGTQIELSTYNIILHG--LCK---NKLTDDALQMFQNLCLMDLKLEARTFNIMI 658

Query: 723  DVVV-LGRS 746
            D ++ +GR+
Sbjct: 659  DALLKVGRN 667



 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 6/228 (2%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLLREACKVGGRSTS-KM 224
           P    Y ILI   C AGRLD       N+  KG   D   +T LL+  C     S +  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 225 FSEDILDNG-LPPLITYRESLFGIYNLHYLDEQAKDLLLLM---QTNGSPADTETFYAVM 392
               + + G +P + +Y   L G+ +     ++A +LL +M   +  GSP D  ++  V+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCD-ENRSQEALELLHMMADDRGGGSPPDVVSYTTVI 203

Query: 393 VALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNNMKEKGVS 572
               K G    A   ++ ++  G+  D   YN  I    K   +++A  +LN M + GV 
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVM 263

Query: 573 PNHFTFIALIEG-CLTCQTIINETMEILLKMSTEDCLLDIETEYMLKD 713
           P+  T+ +++ G C + Q    E +  L KM ++    D+ T  +L D
Sbjct: 264 PDCMTYNSILHGYCSSGQP--KEAIGFLKKMRSDGVEPDVVTYSLLMD 309


>gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  120 bits (302), Expect = 3e-25
 Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 1/251 (0%)
 Frame = +3

Query: 3    EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
            E++ +FDLMV    KP  + Y  LIDGYCLAG++DEA+ L   + S GL P+T TY TL+
Sbjct: 464  ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLI 523

Query: 183  REACKVGGRSTSKMFSEDILDNGL-PPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGS 359
               CK+     + +  +++  +G+ P +ITY   L G++        AK+L + +  +G+
Sbjct: 524  NGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTR-RTAAAKELYVRITESGT 582

Query: 360  PADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARS 539
              +  T+  ++  L K      A  +F +L +  + L+ R +NI I+   K G+  EA+ 
Sbjct: 583  QIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKD 642

Query: 540  LLNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVV 719
            L       G+ PN++T+  + E  +  Q ++ E  ++ L M    C +D     ML  +V
Sbjct: 643  LFVAFSSNGLVPNYWTYRLMAENIIG-QGLLEELDQLFLSMEDNGCTVD---SGMLNFIV 698

Query: 720  RDVVVLGRSTK 752
            R+++  G  T+
Sbjct: 699  RELLQRGEITR 709



 Score =  100 bits (250), Expect = 3e-19
 Identities = 64/200 (32%), Positives = 105/200 (52%), Gaps = 1/200 (0%)
 Frame = +3

Query: 12  AIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLLREA 191
           A+ DLMV     P    Y ILI  Y   G++DEA+++F  +R +GL PD  TY  ++   
Sbjct: 327 ALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGIL 386

Query: 192 CKVGGRSTSKMFSEDILDNGLPP-LITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSPAD 368
           CK G    + ++ E ++D GL P  I Y   + G+   +   E+A++L+L M   G   +
Sbjct: 387 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW-ERAEELILEMLDRGICLN 445

Query: 369 TETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLN 548
           T  F +++ +  K G++  +  LF  ++  G+  D   Y+  I+ +   GK++EA  LL+
Sbjct: 446 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLS 505

Query: 549 NMKEKGVSPNHFTFIALIEG 608
            M   G+ PN  T+  LI G
Sbjct: 506 GMVSVGLKPNTVTYRTLING 525



 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 5/225 (2%)
 Frame = +3

Query: 3   EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
           +A + +  M+ R   P  + Y  +I   C    +D+A+ +  ++   G++P+  TYT+++
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIM 273

Query: 183 REACKVGGRSTS-----KMFSEDILDNGLPPLITYRESLFGIYNLHYLDEQAKDLLLLMQ 347
              C  G    +     K+ S+ +  +GL P I    +L   Y           LL LM 
Sbjct: 274 HGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMV 333

Query: 348 TNGSPADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLE 527
            NG   D   +  ++ A  K GK+  A  +F  +   G+  D   Y   I    K+G++E
Sbjct: 334 RNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVE 393

Query: 528 EARSLLNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKM 662
           +A      M ++G+SP +  + +LI G  TC        E++L+M
Sbjct: 394 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK-WERAEELILEM 437



 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 61/250 (24%), Positives = 113/250 (45%), Gaps = 2/250 (0%)
 Frame = +3

Query: 3    EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
            +A   F+ M+     P  + Y  LI G C   + + A  L L +  +G+  +T  + +++
Sbjct: 394  DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 453

Query: 183  REACKVGG-RSTSKMFSEDILDNGLPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGS 359
               CK G    + K+F   +     P +ITY   + G      +DE  K LL  M + G 
Sbjct: 454  DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMK-LLSGMVSVGL 512

Query: 360  PADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARS 539
              +T T+  ++    K  ++G A  LF  +   G+  D   YNI ++   +T +   A+ 
Sbjct: 513  KPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 572

Query: 540  LLNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVV 719
            L   + E G      T+  ++ G   C+   N+  +  L+M    CL+D++ E    +++
Sbjct: 573  LYVRITESGTQIELSTYNIILHG--LCK---NKLTDDALRMFQNLCLMDLKLEARTFNIM 627

Query: 720  RDVVV-LGRS 746
             D ++ +GR+
Sbjct: 628  IDALLKVGRN 637



 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 9/214 (4%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVIL---FLNIRSKGLIPDTPTYTTLLREACKVGGRSTS 218
           P   +  IL+ G C   R  EA+ L     + R  G  PD  +YTT++    K G    +
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKA 215

Query: 219 KMFSEDILDNGL-PPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSPADTETFYAVMV 395
                ++LD  + P ++TY   +  +     +D +A ++L  M  NG   +  T+ ++M 
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMD-KAMEVLTSMVKNGVMPNCRTYTSIMH 274

Query: 396 ALRKAGKLGSA-----RCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNNMKE 560
               +G+   A     +     +  DG+  D   Y   ++ ++  G L    +LL+ M  
Sbjct: 275 GYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVR 334

Query: 561 KGVSPNHFTFIALIEGCLTCQTIINETMEILLKM 662
            G+ P+H+ +  LI      Q  ++E M +  KM
Sbjct: 335 NGIHPDHYVYNILI-CAYAKQGKVDEAMLVFSKM 367


>sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
            restorer; AltName: Full=Protein PPR; AltName:
            Full=Restorer for CMS; Flags: Precursor
            gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa
            Indica Group] gi|33859442|dbj|BAC77666.2| Rf1 [Oryza
            sativa Indica Group] gi|41152689|dbj|BAD08214.1|
            fertility restorer [Oryza sativa Indica Group]
            gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa
            Indica Group] gi|47550657|dbj|BAD20283.1| restorer for
            CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  120 bits (302), Expect = 3e-25
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 1/251 (0%)
 Frame = +3

Query: 3    EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
            E++ +F+LMV    KP  + Y  LI+GYCLAG++DEA+ L   + S GL P+T TY+TL+
Sbjct: 494  ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553

Query: 183  REACKVGGRSTSKMFSEDILDNGL-PPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGS 359
               CK+     + +  +++  +G+ P +ITY   L G++        AK+L + +  +G+
Sbjct: 554  NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR-RTAAAKELYVRITESGT 612

Query: 360  PADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARS 539
              +  T+  ++  L K      A  +F +L +  + L+ R +NI I+   K G+ +EA+ 
Sbjct: 613  QIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672

Query: 540  LLNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVV 719
            L       G+ PN++T+  + E  +  Q ++ E  ++ L M    C +D     ML  +V
Sbjct: 673  LFVAFSSNGLVPNYWTYRLMAENIIG-QGLLEELDQLFLSMEDNGCTVD---SGMLNFIV 728

Query: 720  RDVVVLGRSTK 752
            R+++  G  T+
Sbjct: 729  RELLQRGEITR 739



 Score = 92.4 bits (228), Expect = 1e-16
 Identities = 62/220 (28%), Positives = 101/220 (45%)
 Frame = +3

Query: 3   EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
           +A  + + MV     P  + Y  ++ GYC +G+  EA+     +RS G+ PD  TY+ L+
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLM 308

Query: 183 REACKVGGRSTSKMFSEDILDNGLPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSP 362
              CK G    ++   + +   GL P IT   +L   Y       +   LL LM  NG  
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368

Query: 363 ADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSL 542
            D   F  ++ A  K GK+  A  +F  +   G+  +   Y   I    K+G++E+A   
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428

Query: 543 LNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKM 662
              M ++G+SP +  + +LI G  TC        E++L+M
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNK-WERAEELILEM 467



 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLLREACKVGGRSTSKMF 227
           P  ++Y  +I+G+   G  D+A   +  +  +G++PD  TY +++   CK      +   
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 228 SEDILDNG-LPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSPADTETFYAVMVALR 404
              ++ NG +P  +TY   L G Y      ++A   L  M+++G   D  T+  +M  L 
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHG-YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC 312

Query: 405 KAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNNMKEKGVSPNHF 584
           K G+   AR +F S+   G+  +   Y   ++ ++  G L E   LL+ M   G+ P+H+
Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372

Query: 585 TFIALI 602
            F  LI
Sbjct: 373 VFSILI 378



 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 4/194 (2%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILF---LNIRSKGLIPDTPTYTTLLREACKVGGRSTS 218
           P   +Y IL+ G C   R  EA+ L     + R  G  PD  +YTT++    K G    +
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 219 KMFSEDILDNG-LPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSPADTETFYAVMV 395
                ++LD G LP ++TY   +  +     +D +A ++L  M  NG   D  T+ +++ 
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD-KAMEVLNTMVKNGVMPDCMTYNSILH 274

Query: 396 ALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNNMKEKGVSP 575
               +G+   A      +  DG+  D   Y++ ++   K G+  EAR + ++M ++G+ P
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334

Query: 576 NHFTFIALIEGCLT 617
              T+  L++G  T
Sbjct: 335 EITTYGTLLQGYAT 348



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 58/249 (23%), Positives = 112/249 (44%), Gaps = 1/249 (0%)
 Frame = +3

Query: 3    EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
            +A   F+ M+     P  + Y  LI G C   + + A  L L +  +G+  +T  + +++
Sbjct: 424  DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 183  REACKVGGRSTSKMFSEDILDNGLPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSP 362
               CK G    S+   E ++  G+ P +    +L   Y L    ++A  LL  M + G  
Sbjct: 484  DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543

Query: 363  ADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSL 542
             +T T+  ++    K  ++  A  LF  +   G+  D   YNI ++   +T +   A+ L
Sbjct: 544  PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 603

Query: 543  LNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVVR 722
               + E G      T+  ++ G   C+   N+  +  L+M    CL+D++ E    +++ 
Sbjct: 604  YVRITESGTQIELSTYNIILHG--LCK---NKLTDDALQMFQNLCLMDLKLEARTFNIMI 658

Query: 723  DVVV-LGRS 746
            D ++ +GR+
Sbjct: 659  DALLKVGRN 667



 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 6/228 (2%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLLREACKVGGRSTS-KM 224
           P    Y ILI   C AGRLD       N+  KG   D   +T LL+  C     S +  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 225 FSEDILDNG-LPPLITYRESLFGIYNLHYLDEQAKDLLLLM---QTNGSPADTETFYAVM 392
               + + G +P + +Y   L G+ +     ++A +LL +M   +  GSP D  ++  V+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCD-ENRSQEALELLHMMADDRGGGSPPDVVSYTTVI 203

Query: 393 VALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNNMKEKGVS 572
               K G    A   ++ ++  G+  D   YN  I    K   +++A  +LN M + GV 
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVM 263

Query: 573 PNHFTFIALIEG-CLTCQTIINETMEILLKMSTEDCLLDIETEYMLKD 713
           P+  T+ +++ G C + Q    E +  L KM ++    D+ T  +L D
Sbjct: 264 PDCMTYNSILHGYCSSGQP--KEAIGFLKKMRSDGVEPDVVTYSLLMD 309


>dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  120 bits (301), Expect = 4e-25
 Identities = 75/251 (29%), Positives = 131/251 (52%), Gaps = 1/251 (0%)
 Frame = +3

Query: 3    EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
            E++ +FDLMV    KP  + Y  LIDGYCLAG++DEA  L  ++ S G+ PD  TY TL+
Sbjct: 494  ESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLI 553

Query: 183  REACKVGGRSTSKMFSEDILDNGLPP-LITYRESLFGIYNLHYLDEQAKDLLLLMQTNGS 359
               C+V     +    ++++ +G+ P +ITY   L G+++       AK+L + +  +G+
Sbjct: 554  NGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTR-RTAAAKELYVGITKSGT 612

Query: 360  PADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARS 539
              +  T+  ++  L K      A  +F +L +  + L+ R +NI I    K G+ +EA+ 
Sbjct: 613  QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 672

Query: 540  LLNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVV 719
            L       G+ PN++T+  + E  +  Q ++ E  ++   M    C +D     ML  +V
Sbjct: 673  LFVAFSSNGLVPNYWTYRLMAENIIG-QGLLEELDQLFFSMEDNGCTVD---SGMLNFIV 728

Query: 720  RDVVVLGRSTK 752
            R+++  G  T+
Sbjct: 729  RELLQRGEITR 739



 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 2/204 (0%)
 Frame = +3

Query: 3   EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
           E  A+ DLMV     P    + ILI  Y    ++DEA+++F  +R  GL P+  TY  ++
Sbjct: 354 EMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVI 413

Query: 183 REACKVGGRSTSKMFSEDILDNGLPPLITYRESLFGIYNLHYLD--EQAKDLLLLMQTNG 356
              CK G    + ++ E ++D GL P I    SL  I++L   D  ++A++L+L M   G
Sbjct: 414 GILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSL--IHSLCIFDKWDKAEELILEMLDRG 471

Query: 357 SPADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEAR 536
              +T  F +++ +  K G++  +  LF  ++  G+  +   Y+  I+ +   GK++EA 
Sbjct: 472 ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 537 SLLNNMKEKGVSPNHFTFIALIEG 608
            LL++M   G+ P+  T+  LI G
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLING 555



 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 1/206 (0%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLLREACKVGGRSTSKMF 227
           P  ++Y  +I+G+   G  D+A   +  +  + + PD  TY++++   CK      +   
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 228 SEDILDNG-LPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSPADTETFYAVMVALR 404
              ++ NG +P  +TY   L G Y      ++A   L  M+++G   D  T+ ++M  L 
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHG-YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLC 312

Query: 405 KAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNNMKEKGVSPNHF 584
           K G+   AR +F S+   G+  D   Y   ++ ++  G L E  +LL+ M   G+ P+H 
Sbjct: 313 KNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHH 372

Query: 585 TFIALIEGCLTCQTIINETMEILLKM 662
            F  LI      Q  ++E M +  KM
Sbjct: 373 VFNILI-CAYAKQEKVDEAMLVFSKM 397



 Score = 67.0 bits (162), Expect = 5e-09
 Identities = 49/223 (21%), Positives = 99/223 (44%)
 Frame = +3

Query: 3   EAKAIFDLMVARYHKPTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLL 182
           +A + +  M+ R   P  + Y  +I   C    +D+A+ +   +   G++P+  TY ++L
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSIL 273

Query: 183 REACKVGGRSTSKMFSEDILDNGLPPLITYRESLFGIYNLHYLDEQAKDLLLLMQTNGSP 362
              C       +  F + +  +G+ P +    SL      +    +A+ +   M   G  
Sbjct: 274 HGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLE 333

Query: 363 ADTETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSL 542
            D  T+  ++      G L     L   ++ +G+  D   +NI I  ++K  K++EA  +
Sbjct: 334 PDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLV 393

Query: 543 LNNMKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTE 671
            + M++ G++PN  T+ A+I G L     +++ M    +M  E
Sbjct: 394 FSKMRQHGLNPNVVTYGAVI-GILCKSGSVDDAMLYFEQMIDE 435



 Score = 56.6 bits (135), Expect = 7e-06
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 12/247 (4%)
 Frame = +3

Query: 48  PTALAYRILIDGYCLAGRLDEAVILFLNIRSKGLIPDTPTYTTLLREACKVGGRSTSKMF 227
           PT   Y ILI   C AGRLD       N+  KG   +  T+T LL+  C    + TS   
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLC--ADKRTS--- 139

Query: 228 SEDILD---------NGLPPLITYRESLFGIYNLHYLDEQAKDLLLLM---QTNGSPADT 371
             D +D         + +P + +    L G+ +     ++A +LL +M   +  GS  D 
Sbjct: 140 --DAMDIVLRRMTELSCMPDVFSCTILLKGLCD-ENRSQEALELLHMMADDRGGGSAPDV 196

Query: 372 ETFYAVMVALRKAGKLGSARCLFYSLIVDGMPLDKRFYNIAIEDFSKTGKLEEARSLLNN 551
            ++  V+    K G    A   ++ ++   +  D   Y+  I    K   +++A  +L  
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTT 256

Query: 552 MKEKGVSPNHFTFIALIEGCLTCQTIINETMEILLKMSTEDCLLDIETEYMLKDVVRDVV 731
           M + GV PN  T+ +++ G  + +    E +  L KM ++    D+ T   L D    + 
Sbjct: 257 MVKNGVMPNCMTYNSILHGYCSSEQ-PKEAIGFLKKMRSDGVEPDVVTYNSLMDY---LC 312

Query: 732 VLGRSTK 752
             GRST+
Sbjct: 313 KNGRSTE 319


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