BLASTX nr result

ID: Coptis23_contig00003078 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003078
         (246 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270966.2| PREDICTED: histone deacetylase HDT1-like [Vi...    94   1e-17
emb|CBI17088.3| unnamed protein product [Vitis vinifera]               94   1e-17
ref|XP_002277422.1| PREDICTED: histone deacetylase HDT1-like [Vi...    94   1e-17
emb|CBI29370.3| unnamed protein product [Vitis vinifera]               91   1e-16
emb|CBI30241.3| unnamed protein product [Vitis vinifera]               89   5e-16

>ref|XP_002270966.2| PREDICTED: histone deacetylase HDT1-like [Vitis vinifera]
          Length = 300

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
 Frame = -1

Query: 246 KTPVPEKKAKLVTPKKSGGEGKKGNTHTATPHPSKQAGKSNA--DXXXXXXXXXXXSHTC 73
           KTPVP KKAKLV+P+K+  +GKKG  HTATPHP+K+AGK+ A  D             +C
Sbjct: 219 KTPVPAKKAKLVSPQKT--DGKKGGAHTATPHPNKKAGKTPASGDKGKGQSPKSGGQVSC 276

Query: 72  KSCTKTFNSDGALQSHTKAKH 10
           KSC+KTFNS+ ALQSH+KAKH
Sbjct: 277 KSCSKTFNSENALQSHSKAKH 297


>emb|CBI17088.3| unnamed protein product [Vitis vinifera]
          Length = 353

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
 Frame = -1

Query: 246 KTPVPEKKAKLVTPKKSGGEGKKGNTHTATPHPSKQAGKSNA--DXXXXXXXXXXXSHTC 73
           KTPVP KKAKLV+P+K+  +GKKG  HTATPHP+K+AGK+ A  D             +C
Sbjct: 272 KTPVPAKKAKLVSPQKT--DGKKGGAHTATPHPNKKAGKTPASGDKGKGQSPKSGGQVSC 329

Query: 72  KSCTKTFNSDGALQSHTKAKH 10
           KSC+KTFNS+ ALQSH+KAKH
Sbjct: 330 KSCSKTFNSENALQSHSKAKH 350


>ref|XP_002277422.1| PREDICTED: histone deacetylase HDT1-like [Vitis vinifera]
          Length = 307

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
 Frame = -1

Query: 246 KTPVPEKKAKLVTPKKSGGEGKKGNTHTATPHPSKQAGK--SNADXXXXXXXXXXXSHTC 73
           KTPVP+KKAK VTP+K+G + KK   H ATP+PSKQAGK  +N +           S +C
Sbjct: 223 KTPVPDKKAKFVTPQKTGDDDKKSGGHVATPYPSKQAGKTPANTEKPKQQVQKSGGSFSC 282

Query: 72  KSCTKTFNSDGALQSHTKAKH 10
           KSC ++FNS+ ALQSHTKAKH
Sbjct: 283 KSCNRSFNSENALQSHTKAKH 303


>emb|CBI29370.3| unnamed protein product [Vitis vinifera]
          Length = 110

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
 Frame = -1

Query: 246 KTPVPEKKAKLVTPKKSGGEGKKGNTHTATPHPSKQAGKSNA--DXXXXXXXXXXXSHTC 73
           KTPVP KKAKLV+P+ +  +GKKG  HTATPHP+K+AGK+ A  D             +C
Sbjct: 29  KTPVPAKKAKLVSPQNT--DGKKGGAHTATPHPNKKAGKTPATGDKGKEQSPKSGGQVSC 86

Query: 72  KSCTKTFNSDGALQSHTKAKH 10
           KSC+KTFNS+ ALQSH+K KH
Sbjct: 87  KSCSKTFNSENALQSHSKTKH 107


>emb|CBI30241.3| unnamed protein product [Vitis vinifera]
          Length = 149

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
 Frame = -1

Query: 246 KTPVPEKKAKLVTPKKSGG---EGKKGNTHTATPHPSKQAGKS--NADXXXXXXXXXXXS 82
           KTPVP+KKAK VTP+K+ G   + KK   H ATP+PSKQAGK+  N +           S
Sbjct: 62  KTPVPDKKAKFVTPQKTDGKKSDDKKSGGHVATPYPSKQAGKTPANTEKPKQQVQKSGGS 121

Query: 81  HTCKSCTKTFNSDGALQSHTKAKH 10
            +CKSC ++FNS+ ALQSHTKAKH
Sbjct: 122 FSCKSCNRSFNSENALQSHTKAKH 145


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