BLASTX nr result

ID: Coptis23_contig00003054 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003054
         (1106 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530850.1| PREDICTED: uncharacterized protein LOC100816...   329   9e-88
ref|XP_002320619.1| predicted protein [Populus trichocarpa] gi|2...   326   6e-87
ref|XP_002301805.1| predicted protein [Populus trichocarpa] gi|2...   325   9e-87
ref|XP_003552105.1| PREDICTED: uncharacterized protein LOC100783...   325   1e-86
ref|XP_003622869.1| GTP cyclohydrolase I [Medicago truncatula] g...   308   1e-81

>ref|XP_003530850.1| PREDICTED: uncharacterized protein LOC100816351 [Glycine max]
          Length = 457

 Score =  329 bits (843), Expect = 9e-88
 Identities = 177/313 (56%), Positives = 208/313 (66%), Gaps = 7/313 (2%)
 Frame = +1

Query: 187  ISNAVNTLLAGLGEDSNREGLIKTPLRVAKALREGTRGYRQKVKDIVQGALFPEXXXXXX 366
            + +AV  LL GLGED NREGL KTPLRVAKALREGTRGYRQKVKDIVQGALFPE      
Sbjct: 24   VEDAVKVLLEGLGEDVNREGLRKTPLRVAKALREGTRGYRQKVKDIVQGALFPEAGLDNR 83

Query: 367  XXXXXXXXXXXXXXXXXXFSYCESCLLPFRVKCHVGYVPSGQRVVGLSKLSRVADVFARR 546
                              FSYCESCLLPF VKCHVGYVPSG+RVVGLSKLSRVADVFA+R
Sbjct: 84   VGHAGGAGGLVIVRDLDLFSYCESCLLPFPVKCHVGYVPSGERVVGLSKLSRVADVFAKR 143

Query: 547  LQDPQRLADEVCSSLYNGIRPAGVGVVLQCWHIEFPQVDCTCHEQINHPTVMDM--QGWL 720
            LQ+PQRLADEVCS+L+ GI+PAGV ++LQC HI FP ++         P  +D   QGW+
Sbjct: 144  LQEPQRLADEVCSALHRGIKPAGVAIILQCTHIHFPDIE---------PVFLDSNHQGWV 194

Query: 721  KVSVCAGAGVFEKETGDVWGDFLALLKFRGVKLDKLRNGXXXXXXXXXXXXLDLLAINGH 900
            K+ V +G+GVFE +  DVW DF  LLKFRG+ +DK+                    + G 
Sbjct: 195  KILVSSGSGVFENKNADVWDDFFGLLKFRGINMDKIH-------------------LRGS 235

Query: 901  TNN-WNP----LSYKTSITAEPAPASMITAVAIILLSLGENPSRKELVGTPRRFVQWLMN 1065
            ++  W P    LS K S    P    M+TAVA I+ SLGE+P RKEL+GTP RFV+WLMN
Sbjct: 236  SDPCWCPSQSSLSAKVSSKIGPVNPVMVTAVASIIESLGEDPLRKELIGTPSRFVKWLMN 295

Query: 1066 FKSSNLGMNLNGF 1104
            F++SN  M LNGF
Sbjct: 296  FQNSNFDMKLNGF 308


>ref|XP_002320619.1| predicted protein [Populus trichocarpa] gi|222861392|gb|EEE98934.1|
            predicted protein [Populus trichocarpa]
          Length = 465

 Score =  326 bits (836), Expect = 6e-87
 Identities = 178/314 (56%), Positives = 207/314 (65%), Gaps = 1/314 (0%)
 Frame = +1

Query: 163  QEQVVISNISNAVNTLLAGLGEDSNREGLIKTPLRVAKALREGTRGYRQKVKDIVQGALF 342
            Q+Q     I +AV  LL GLGED NREGL KTPLRVAKALREGT+GY+Q+VK+IVQGALF
Sbjct: 27   QDQPETVAIEDAVKVLLQGLGEDINREGLKKTPLRVAKALREGTKGYKQRVKEIVQGALF 86

Query: 343  PEXXXXXXXXXXXXXXXXXXXXXXXXFSYCESCLLPFRVKCHVGYVPSGQRVVGLSKLSR 522
            PE                        FSYCESCLLPF+VKC +GYVPSGQRVVGLSKLSR
Sbjct: 87   PEVGLDDEVGQAGGAGGLVIVRDLDLFSYCESCLLPFQVKCQIGYVPSGQRVVGLSKLSR 146

Query: 523  VADVFARRLQDPQRLADEVCSSLYNGIRPAGVGVVLQCWHIEFPQVDCTCHEQINHPTVM 702
            VADVFA+RLQDPQRLADE+CS+L++G+ PAGV VVLQC HI+FP ++    +  NH    
Sbjct: 147  VADVFAKRLQDPQRLADEICSALHHGVMPAGVAVVLQCLHIQFPNIESLFLDS-NH---- 201

Query: 703  DMQGWLKVSVCAGAGVFEKETGDVWGDFLALLKFRGVKLDKLRNGXXXXXXXXXXXXLDL 882
              QGW+K  V +G+GVFE E  DVWGDFL+LLKFRG+ LDK +                 
Sbjct: 202  --QGWVKAVVHSGSGVFENELADVWGDFLSLLKFRGINLDKTQMKDSVQQC--------- 250

Query: 883  LAINGHTNNWNPLSYKTSITA-EPAPASMITAVAIILLSLGENPSRKELVGTPRRFVQWL 1059
                     W P  Y +S     P    M+TAV  IL SLGE+P RKELVGTP RFV+WL
Sbjct: 251  ---------WCPSRYSSSAKVIGPPNRGMVTAVTSILSSLGEDPLRKELVGTPSRFVKWL 301

Query: 1060 MNFKSSNLGMNLNG 1101
            MNF+S NL M LNG
Sbjct: 302  MNFQSPNLEMKLNG 315


>ref|XP_002301805.1| predicted protein [Populus trichocarpa] gi|222843531|gb|EEE81078.1|
            predicted protein [Populus trichocarpa]
          Length = 465

 Score =  325 bits (834), Expect = 9e-87
 Identities = 180/344 (52%), Positives = 217/344 (63%), Gaps = 6/344 (1%)
 Frame = +1

Query: 91   MGALNDEHFXXXXXXXXXXXXXXX--QEQVVISNISNAVNTLLAGLGEDSNREGLIKTPL 264
            MGAL++EHF                 ++Q+    I +AV  LL GLGED NREGL KTPL
Sbjct: 1    MGALDEEHFNKEIENGVELDCLDLGFEDQLETVAIEDAVKVLLQGLGEDINREGLKKTPL 60

Query: 265  RVAKALREGTRGYRQKVKDIVQGALFPEXXXXXXXXXXXXXXXXXXXXXXXXFSYCESCL 444
            RVAKALREGT+GY+QK KDIVQ ALFPE                        FSYCESCL
Sbjct: 61   RVAKALREGTKGYKQKAKDIVQSALFPEVGLDDAVGHAGGAGGLVIVRDLDLFSYCESCL 120

Query: 445  LPFRVKCHVGYVPSGQRVVGLSKLSRVADVFARRLQDPQRLADEVCSSLYNGIRPAGVGV 624
            LPF+VKC +GYVPSGQRVVGLSKLSRVADVFA+RLQDPQRLADE+CS+L+ GI+PAGV V
Sbjct: 121  LPFQVKCQIGYVPSGQRVVGLSKLSRVADVFAKRLQDPQRLADEICSALHLGIKPAGVAV 180

Query: 625  VLQCWHIEFPQVDCTCHEQINHPTVMD--MQGWLKVSVCAGAGVFEKETGDVWGDFLALL 798
            +LQC HI FP ++         P  +D  +QGW+K  V +G+GVFE +  DVW DF +LL
Sbjct: 181  ILQCSHIHFPNIE---------PPFLDSNLQGWVKALVHSGSGVFENDFADVWDDFFSLL 231

Query: 799  KFRGVKLDKLRNGXXXXXXXXXXXXLDLLAINGHTNNWNPLSYKTS--ITAEPAPASMIT 972
            KFRG+ +DK                   L  +     W P  Y +S  +T +P    M+T
Sbjct: 232  KFRGINVDK------------------TLMKDSKQQCWCPSQYSSSAEVTGQP-NTGMVT 272

Query: 973  AVAIILLSLGENPSRKELVGTPRRFVQWLMNFKSSNLGMNLNGF 1104
            AV  IL+SLGENP RKEL GTP  FV+WLMNF+++NL   LNGF
Sbjct: 273  AVTSILISLGENPLRKELAGTPSHFVKWLMNFQNANLETKLNGF 316


>ref|XP_003552105.1| PREDICTED: uncharacterized protein LOC100783814 [Glycine max]
          Length = 467

 Score =  325 bits (833), Expect = 1e-86
 Identities = 174/311 (55%), Positives = 203/311 (65%), Gaps = 5/311 (1%)
 Frame = +1

Query: 187  ISNAVNTLLAGLGEDSNREGLIKTPLRVAKALREGTRGYRQKVKDIVQGALFPEXXXXXX 366
            I +AV  LL GLGED NREGL KTPLRVAKAL EGTRGYRQKV DIVQGALFPE      
Sbjct: 34   IEDAVKVLLEGLGEDVNREGLRKTPLRVAKALHEGTRGYRQKVNDIVQGALFPEAGLDNR 93

Query: 367  XXXXXXXXXXXXXXXXXXFSYCESCLLPFRVKCHVGYVPSGQRVVGLSKLSRVADVFARR 546
                              FSYCESCLLPF VKCHVGYVPSG+RVVGLSKLSRVADVFA+R
Sbjct: 94   VGHAGGAGGLVIVRDLDLFSYCESCLLPFPVKCHVGYVPSGERVVGLSKLSRVADVFAKR 153

Query: 547  LQDPQRLADEVCSSLYNGIRPAGVGVVLQCWHIEFPQVDCTCHEQINHPTVMDMQGWLKV 726
            LQ+PQRLADEVCS+L+ GIRPAGV ++LQC HI FP ++    +        + QGW+K+
Sbjct: 154  LQEPQRLADEVCSALHQGIRPAGVAIILQCSHIHFPDIESVFLDS-------NYQGWVKI 206

Query: 727  SVCAGAGVFEKETGDVWGDFLALLKFRGVKLDKLRNGXXXXXXXXXXXXLDLLAINGHTN 906
             V +G+GVFE +  DVW DF  LLKFRG+ +DK+                      G ++
Sbjct: 207  LVSSGSGVFENKNADVWADFFGLLKFRGINMDKIH-------------------FRGSSD 247

Query: 907  N-WNP----LSYKTSITAEPAPASMITAVAIILLSLGENPSRKELVGTPRRFVQWLMNFK 1071
              W P    LS K S    P    M+TAVA ++ SLGENP RKEL+GTP RFV+WLMNF+
Sbjct: 248  PCWCPSQSSLSAKVSSKIGPVNPVMVTAVASVIESLGENPLRKELIGTPTRFVKWLMNFQ 307

Query: 1072 SSNLGMNLNGF 1104
             SN  + LNGF
Sbjct: 308  KSNFNIKLNGF 318


>ref|XP_003622869.1| GTP cyclohydrolase I [Medicago truncatula]
            gi|355497884|gb|AES79087.1| GTP cyclohydrolase I
            [Medicago truncatula]
          Length = 456

 Score =  308 bits (790), Expect = 1e-81
 Identities = 167/310 (53%), Positives = 205/310 (66%), Gaps = 2/310 (0%)
 Frame = +1

Query: 181  SNISNAVNTLLAGLGEDSNREGLIKTPLRVAKALREGTRGYRQKVKDIVQGALFPEXXXX 360
            S I +AV  LL GLGED NREG+ KTPLRVAKALR+GTRGYRQKVKDIV+GALFPE    
Sbjct: 24   SAIEDAVKVLLMGLGEDINREGIRKTPLRVAKALRDGTRGYRQKVKDIVEGALFPEAGLD 83

Query: 361  XXXXXXXXXXXXXXXXXXXXFSYCESCLLPFRVKCHVGYVPSGQRVVGLSKLSRVADVFA 540
                                FSYCESC+LPF+VKCHVGYVPS +RVVGLSKLSRVADVFA
Sbjct: 84   NRVGHAGGAGGLVIVRDIDLFSYCESCMLPFQVKCHVGYVPSSERVVGLSKLSRVADVFA 143

Query: 541  RRLQDPQRLADEVCSSLYNGIRPAGVGVVLQCWHIEFPQVDCTCHEQINHPTVMDMQGWL 720
            +RLQ+PQRLA+EVCS+L++GI+P GV ++LQC HI FP V+    +  NH      QG +
Sbjct: 144  KRLQEPQRLANEVCSALHHGIKPDGVAIILQCTHIHFPDVESVFLDS-NH------QGLV 196

Query: 721  KVSVCAGAGVFEKETGDVWGDFLALLKFRGVKLDKLRNGXXXXXXXXXXXXLDLLAINGH 900
            K+ V AG+GVFE +  D W DF +LLKFRG+ ++K+                      G 
Sbjct: 197  KILVSAGSGVFENKNADEWADFFSLLKFRGISMEKIN-------------------FRGS 237

Query: 901  TN-NW-NPLSYKTSITAEPAPASMITAVAIILLSLGENPSRKELVGTPRRFVQWLMNFKS 1074
            ++ +W +  S K S    P   +M+TA A I+ SLGE+P RKEL GTP RFV+WLMNF++
Sbjct: 238  SDMSWCSSQSAKISSKVGPVNPAMVTAAASIIKSLGEDPLRKELRGTPTRFVKWLMNFQN 297

Query: 1075 SNLGMNLNGF 1104
             N  M LNGF
Sbjct: 298  CNFDMKLNGF 307


Top