BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00003000
         (1367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78473.1| hypothetical protein VITISV_026793 [Vitis vinifera]   484   e-134
emb|CBI19333.3| unnamed protein product [Vitis vinifera]              484   e-134
ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g...   484   e-134
ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus ...   458   e-126
ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g...   432   e-118

>emb|CAN78473.1| hypothetical protein VITISV_026793 [Vitis vinifera]
          Length = 709

 Score =  484 bits (1247), Expect = e-134
 Identities = 272/473 (57%), Positives = 330/473 (69%), Gaps = 18/473 (3%)
 Frame = -1

Query: 1367 RLLVLSSQVGCLLGKGGSVIKQMAADSGAQIRILPRDKLPQCASSTDELVQLTGGLEAVR 1188
            RLLVLSSQVGCLLGKGGSVIKQM+A+SGAQIRILPRDKLP CAS +DELVQ+TG L+A +
Sbjct: 185  RLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACK 244

Query: 1187 KALQLVSQQLLDNPPRDRESFPTTKTIGPSSHPFAP-ISKPDVHQPPNYQFQGQAALYSS 1011
            +ALQ +SQQLL+NPPRD +   T  T G SSH F P + + +   PPNY F  Q A Y++
Sbjct: 245  QALQSISQQLLENPPRDYDIVSTNPT-GSSSHLFGPPLPRSEAQPPPNYSFPAQGAPYAA 303

Query: 1010 GPHDRPDYHLNGPHSIPKYRETGIPSRMRPSLEVTFRMLSHNERXXXXXXXXXXXXXTLQ 831
            G  D  DYH N P  + K+ E+G+P  M+P   +TFR+L H+ER              LQ
Sbjct: 304  GVRDT-DYHSNTPQ-LHKFHESGMPGXMKPQDILTFRLLCHDERVGGIIGKGGTIIKNLQ 361

Query: 830  HETGCDIKILEGSPDSEDRLIIITGPAHPDDRISAVQDAVLRVQGRIARALPDSSDKPVI 651
            +ETGC+IK+L+G PDSEDR+I I+G AHPDDRIS  QDAVLRVQ RI RA+PDS +K VI
Sbjct: 362  NETGCEIKVLDGVPDSEDRVIFISGSAHPDDRISPAQDAVLRVQSRIVRAIPDSKEKTVI 421

Query: 650  SRLIVSSSQIGCLLGMGGTIIAEMRKYTGANIRILPKDQIPKFVSGTEEVVQMTGEFESV 471
            +RL+VSS+QIGCLLG GG IIAEMRK +GA+IRIL KDQIPK  S  EEVVQ+ GEFE+V
Sbjct: 422  ARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAV 481

Query: 470  QEALFQITSRLQHDLLRFAFPSMNQPGHHAFPDQLPPF-PYMGRREPSPPGMY------- 315
            QEAL QIT+RL+H   R AF S+N P + AF DQ+PPF PY+ RRE SPPGMY       
Sbjct: 482  QEALLQITTRLRHHHFRDAF-SVNHPSNPAFTDQVPPFPPYLARREFSPPGMYSNLGPSF 540

Query: 314  -----MGXXXXXXXXXXXXXRSAFAQNIHRQG-PPHSSGRIHSSAPWEPQGVIDVGGPMG 153
                 +G             R+ F  +IHR G PPH   R  SSAPW  QG+I+ G P+G
Sbjct: 541  HKFDAVGVLHPHGGFHPHDDRAPFMHSIHRLGIPPHIPERKPSSAPWGHQGLIEGGVPIG 600

Query: 152  MSEYAGGAPQRR---FGGGSQHAXXXXXXXXXXVPRAIVPSIYGEDGSSLKQI 3
            ++++AGG PQRR   FGGG+Q A          VPR++VPSIYGEDG  L+QI
Sbjct: 601  LADFAGG-PQRRIPGFGGGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQI 652



 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
 Frame = -1

Query: 800 EGSPDSEDRLIIITGPAHPDDRISAVQDAVLRVQGRIARALP-------DSSDKPV-ISR 645
           E   + ED+  +    +  +  IS+VQ A+L V  R+A           DS+  P  + R
Sbjct: 126 EPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVR 185

Query: 644 LIVSSSQIGCLLGMGGTIIAEMRKYTGANIRILPKDQIPKFVSGTEEVVQMTGEFESVQE 465
           L+V SSQ+GCLLG GG++I +M   +GA IRILP+D++P   S ++E+VQ+TGE ++ ++
Sbjct: 186 LLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACKQ 245

Query: 464 ALFQITSRLQHDLLR-FAFPSMNQPG--HHAFPDQLPPFPYMGRREPSPPGMY 315
           AL  I+ +L  +  R +   S N  G   H F    PP P   R E  PP  Y
Sbjct: 246 ALQSISQQLLENPPRDYDIVSTNPTGSSSHLFG---PPLP---RSEAQPPPNY 292


>emb|CBI19333.3| unnamed protein product [Vitis vinifera]
          Length = 672

 Score =  484 bits (1245), Expect = e-134
 Identities = 272/473 (57%), Positives = 330/473 (69%), Gaps = 18/473 (3%)
 Frame = -1

Query: 1367 RLLVLSSQVGCLLGKGGSVIKQMAADSGAQIRILPRDKLPQCASSTDELVQLTGGLEAVR 1188
            RLLVLSSQVGCLLGKGGSVIKQM+A+SGAQIRILPRDKLP CAS +DELVQ+TG L+A +
Sbjct: 156  RLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACK 215

Query: 1187 KALQLVSQQLLDNPPRDRESFPTTKTIGPSSHPFAP-ISKPDVHQPPNYQFQGQAALYSS 1011
            +ALQ +SQQLL+NPPRD +   T  T G SSH F P + + +   PPNY F  Q A Y++
Sbjct: 216  QALQSISQQLLENPPRDYDIVSTNPT-GSSSHLFGPPLPRSEAQPPPNYSFPAQGAPYAA 274

Query: 1010 GPHDRPDYHLNGPHSIPKYRETGIPSRMRPSLEVTFRMLSHNERXXXXXXXXXXXXXTLQ 831
            G  D  DYH N P  + K+ E+G+P  M+P   +TFR+L H+ER              LQ
Sbjct: 275  GVRDT-DYHSNTPQ-LHKFHESGMPGWMKPQDILTFRLLCHDERVGGIIGKGGTIIKNLQ 332

Query: 830  HETGCDIKILEGSPDSEDRLIIITGPAHPDDRISAVQDAVLRVQGRIARALPDSSDKPVI 651
            +ETGC+IK+L+G PDSEDR+I I+G AHPDDRIS  QDAVLRVQ RI RA+PDS +K VI
Sbjct: 333  NETGCEIKVLDGVPDSEDRVIFISGSAHPDDRISPAQDAVLRVQSRIVRAIPDSKEKTVI 392

Query: 650  SRLIVSSSQIGCLLGMGGTIIAEMRKYTGANIRILPKDQIPKFVSGTEEVVQMTGEFESV 471
            +RL+VSS+QIGCLLG GG IIAEMRK +GA+IRIL KDQIPK  S  EEVVQ+ GEFE+V
Sbjct: 393  ARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAV 452

Query: 470  QEALFQITSRLQHDLLRFAFPSMNQPGHHAFPDQLPPF-PYMGRREPSPPGMY------- 315
            QEAL QIT+RL+H   R AF S+N P + AF DQ+PPF PY+ RRE SPPGMY       
Sbjct: 453  QEALLQITTRLRHHHFRDAF-SVNHPSNPAFTDQVPPFPPYLARREFSPPGMYSNLGPSF 511

Query: 314  -----MGXXXXXXXXXXXXXRSAFAQNIHRQG-PPHSSGRIHSSAPWEPQGVIDVGGPMG 153
                 +G             R+ F  +IHR G PPH   R  SSAPW  QG+I+ G P+G
Sbjct: 512  HKFDAVGVLHPHGGFHPHDDRAPFMHSIHRLGIPPHIPERKPSSAPWGHQGLIEGGVPIG 571

Query: 152  MSEYAGGAPQRR---FGGGSQHAXXXXXXXXXXVPRAIVPSIYGEDGSSLKQI 3
            ++++AGG PQRR   FGGG+Q A          VPR++VPSIYGEDG  L+QI
Sbjct: 572  LADFAGG-PQRRIPGFGGGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQI 623



 Score = 97.1 bits (240), Expect = 1e-17
 Identities = 75/225 (33%), Positives = 114/225 (50%), Gaps = 26/225 (11%)
 Frame = -1

Query: 911 VTFRMLSHNERXXXXXXXXXXXXXTLQHETGCDIKILEGSPDSEDRLIIITGP------- 753
           V FR+L    +              ++ ETG  +++ E     ++R+++ITG        
Sbjct: 45  VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104

Query: 752 ---AHPDDR-----ISAVQDAVLRVQGRIARALP-------DSSDKPV-ISRLIVSSSQI 621
              +  DD      IS+VQ A+L V  R+A           DS+  P  + RL+V SSQ+
Sbjct: 105 NEQSKEDDSQVEKGISSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQV 164

Query: 620 GCLLGMGGTIIAEMRKYTGANIRILPKDQIPKFVSGTEEVVQMTGEFESVQEALFQITSR 441
           GCLLG GG++I +M   +GA IRILP+D++P   S ++E+VQ+TGE ++ ++AL  I+ +
Sbjct: 165 GCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQ 224

Query: 440 LQHDLLR-FAFPSMNQPG--HHAFPDQLPPFPYMGRREPSPPGMY 315
           L  +  R +   S N  G   H F    PP P   R E  PP  Y
Sbjct: 225 LLENPPRDYDIVSTNPTGSSSHLFG---PPLP---RSEAQPPPNY 263


>ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
            vinifera]
          Length = 701

 Score =  484 bits (1245), Expect = e-134
 Identities = 272/473 (57%), Positives = 330/473 (69%), Gaps = 18/473 (3%)
 Frame = -1

Query: 1367 RLLVLSSQVGCLLGKGGSVIKQMAADSGAQIRILPRDKLPQCASSTDELVQLTGGLEAVR 1188
            RLLVLSSQVGCLLGKGGSVIKQM+A+SGAQIRILPRDKLP CAS +DELVQ+TG L+A +
Sbjct: 185  RLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACK 244

Query: 1187 KALQLVSQQLLDNPPRDRESFPTTKTIGPSSHPFAP-ISKPDVHQPPNYQFQGQAALYSS 1011
            +ALQ +SQQLL+NPPRD +   T  T G SSH F P + + +   PPNY F  Q A Y++
Sbjct: 245  QALQSISQQLLENPPRDYDIVSTNPT-GSSSHLFGPPLPRSEAQPPPNYSFPAQGAPYAA 303

Query: 1010 GPHDRPDYHLNGPHSIPKYRETGIPSRMRPSLEVTFRMLSHNERXXXXXXXXXXXXXTLQ 831
            G  D  DYH N P  + K+ E+G+P  M+P   +TFR+L H+ER              LQ
Sbjct: 304  GVRDT-DYHSNTPQ-LHKFHESGMPGWMKPQDILTFRLLCHDERVGGIIGKGGTIIKNLQ 361

Query: 830  HETGCDIKILEGSPDSEDRLIIITGPAHPDDRISAVQDAVLRVQGRIARALPDSSDKPVI 651
            +ETGC+IK+L+G PDSEDR+I I+G AHPDDRIS  QDAVLRVQ RI RA+PDS +K VI
Sbjct: 362  NETGCEIKVLDGVPDSEDRVIFISGSAHPDDRISPAQDAVLRVQSRIVRAIPDSKEKTVI 421

Query: 650  SRLIVSSSQIGCLLGMGGTIIAEMRKYTGANIRILPKDQIPKFVSGTEEVVQMTGEFESV 471
            +RL+VSS+QIGCLLG GG IIAEMRK +GA+IRIL KDQIPK  S  EEVVQ+ GEFE+V
Sbjct: 422  ARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAV 481

Query: 470  QEALFQITSRLQHDLLRFAFPSMNQPGHHAFPDQLPPF-PYMGRREPSPPGMY------- 315
            QEAL QIT+RL+H   R AF S+N P + AF DQ+PPF PY+ RRE SPPGMY       
Sbjct: 482  QEALLQITTRLRHHHFRDAF-SVNHPSNPAFTDQVPPFPPYLARREFSPPGMYSNLGPSF 540

Query: 314  -----MGXXXXXXXXXXXXXRSAFAQNIHRQG-PPHSSGRIHSSAPWEPQGVIDVGGPMG 153
                 +G             R+ F  +IHR G PPH   R  SSAPW  QG+I+ G P+G
Sbjct: 541  HKFDAVGVLHPHGGFHPHDDRAPFMHSIHRLGIPPHIPERKPSSAPWGHQGLIEGGVPIG 600

Query: 152  MSEYAGGAPQRR---FGGGSQHAXXXXXXXXXXVPRAIVPSIYGEDGSSLKQI 3
            ++++AGG PQRR   FGGG+Q A          VPR++VPSIYGEDG  L+QI
Sbjct: 601  LADFAGG-PQRRIPGFGGGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQI 652



 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
 Frame = -1

Query: 800 EGSPDSEDRLIIITGPAHPDDRISAVQDAVLRVQGRIARALP-------DSSDKPV-ISR 645
           E   + ED+  +    +  +  IS+VQ A+L V  R+A           DS+  P  + R
Sbjct: 126 EPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVR 185

Query: 644 LIVSSSQIGCLLGMGGTIIAEMRKYTGANIRILPKDQIPKFVSGTEEVVQMTGEFESVQE 465
           L+V SSQ+GCLLG GG++I +M   +GA IRILP+D++P   S ++E+VQ+TGE ++ ++
Sbjct: 186 LLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACKQ 245

Query: 464 ALFQITSRLQHDLLR-FAFPSMNQPG--HHAFPDQLPPFPYMGRREPSPPGMY 315
           AL  I+ +L  +  R +   S N  G   H F    PP P   R E  PP  Y
Sbjct: 246 ALQSISQQLLENPPRDYDIVSTNPTGSSSHLFG---PPLP---RSEAQPPPNY 292


>ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus communis]
            gi|223550715|gb|EEF52201.1| Poly(rC)-binding protein,
            putative [Ricinus communis]
          Length = 679

 Score =  458 bits (1178), Expect = e-126
 Identities = 262/470 (55%), Positives = 316/470 (67%), Gaps = 15/470 (3%)
 Frame = -1

Query: 1367 RLLVLSSQVGCLLGKGGSVIKQMAADSGAQIRILPRDKLPQCASSTDELVQLTGGLEAVR 1188
            RLLVLSSQVGCLLGKGGSVIKQM+A+SGAQIRILPRDKLP CAS TDELVQ+ G ++A+R
Sbjct: 182  RLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPICASPTDELVQIAGEVDAIR 241

Query: 1187 KALQLVSQQLLDNPPRDRESFPTTKTIGPSSHPFA-PISKPDVHQPPNYQFQGQAALYSS 1011
            KALQ V+QQLL+NPP+D E++P   T GPSSH F  P+ +P+ + PP + F  +   Y +
Sbjct: 242  KALQSVAQQLLENPPKDPEAYPPIST-GPSSHSFGHPLPRPEAYPPPYHSFNARGTTYGA 300

Query: 1010 GPHDRPDYHLNGPHSIPKYRETGIPSRMRPSLE-VTFRMLSHNERXXXXXXXXXXXXXTL 834
            GP +              + E G+P RMRP+ + +TFR+L  +E+             TL
Sbjct: 301  GPRE--------------FHEGGMPGRMRPAPDMLTFRLLCLDEKVGGVIGKGGAIIKTL 346

Query: 833  QHETGCDIKILEGSPDSEDRLIIITGPAHPDDRISAVQDAVLRVQGRIARA--LPDSSDK 660
            Q ETGC+IK+LEG  DSEDR+I+I+GPAHPDDRISA QDAVLRVQ RIARA  LP+  +K
Sbjct: 347  QQETGCEIKVLEGVSDSEDRIILISGPAHPDDRISAAQDAVLRVQTRIARALPLPEGKEK 406

Query: 659  PVISRLIVSSSQIGCLLGMGGTIIAEMRKYTGANIRILPKDQIPKFVSGTEEVVQMTGEF 480
             VI RL+VSS+QIGCLLG GG I+AEMRK TGA IRIL KDQIPK  S  EEVVQ+ GE 
Sbjct: 407  AVIGRLLVSSNQIGCLLGKGGAIMAEMRKSTGAYIRILGKDQIPKCASENEEVVQINGEH 466

Query: 479  ESVQEALFQITSRLQHDLLRFAFPSMNQPGHHAFPDQLPPF-PYMGRREPSPPGMY---- 315
            E VQEAL QIT+RL++   R  FPS++ P + AF DQ PPF PYMGRRE SPP       
Sbjct: 467  EVVQEALLQITTRLRNHFFRDVFPSIDHPSNPAFLDQAPPFPPYMGRRELSPPFHAFHSF 526

Query: 314  --MGXXXXXXXXXXXXXRSAFAQNIHRQG-PPHSSGRIHSSAPWEPQGVIDVGGPMGMSE 144
              MG              S F  NIHR G PPH   +     PW PQG+++ GGPMG+ E
Sbjct: 527  DGMGGPPPPVGFHPHDDHSPFMHNIHRPGMPPHFERK-----PWGPQGLMEAGGPMGLPE 581

Query: 143  YAGGAPQRR---FGGGSQHAXXXXXXXXXXVPRAIVPSIYGEDGSSLKQI 3
            + GG PQRR   FGG +  A          VPR++VP IYGEDG+ LKQI
Sbjct: 582  F-GGHPQRRISGFGGVNHPAIITSTTVEVVVPRSVVPVIYGEDGACLKQI 630


>ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]
          Length = 678

 Score =  432 bits (1110), Expect = e-118
 Identities = 243/461 (52%), Positives = 309/461 (67%), Gaps = 6/461 (1%)
 Frame = -1

Query: 1367 RLLVLSSQVGCLLGKGGSVIKQMAADSGAQIRILPRDKLPQCASSTDELVQLTGGLEAVR 1188
            RLL+L++QVGC+LGKGGSVIK+MAA+SGAQIRILP+DK+P CAS+ DE+VQ++G +E VR
Sbjct: 182  RLLILTAQVGCVLGKGGSVIKRMAAESGAQIRILPKDKVPVCASAFDEIVQISGSVEVVR 241

Query: 1187 KALQLVSQQLLDNPPRDRESFPTTKTIGPSSHPFAPISKPDVHQPPNYQFQGQAALYSSG 1008
            KALQ VSQQLL+NPPRD ES  + K+ GPSSH F          P N+ F  Q   +++G
Sbjct: 242  KALQSVSQQLLENPPRDHESL-SAKSTGPSSHSFGQFP------PHNHSFAAQGEPFATG 294

Query: 1007 PHDRPDYHLNGPHSIPKYRETGIPSRMRPSLEV-TFRMLSHNERXXXXXXXXXXXXXTLQ 831
            PHD   +H + P  IPK+ E  I  R RP  E+ TFR+L   ER             T+Q
Sbjct: 295  PHDISAFH-SAPPLIPKFHEAAIHGRTRPLQEMLTFRLLCPVERVGNIIGKGGAIIKTVQ 353

Query: 830  HETGCDIKILEGSPDSEDRLIIITGPAHPDDRISAVQDAVLRVQGRIARALPDSSDKPVI 651
             ET  +IK+LE  PDSED +I+I+GPAHP+DR+S VQ+AV RVQ RIA+ +PD++D  ++
Sbjct: 354  QETVSEIKVLEAPPDSEDCVIVISGPAHPEDRVSPVQEAVFRVQTRIAKPIPDANDHTML 413

Query: 650  SRLIVSSSQIGCLLGMGGTIIAEMRKYTGANIRILPKDQIPKFVSGTEEVVQMTGEFESV 471
            +R +VSS+QIGCLLG GG+II EMRK +GA+IRIL KD++PK  S  EEV+Q+ GE E+V
Sbjct: 414  ARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAV 473

Query: 470  QEALFQITSRLQHDLLRFAFPSMNQPGHHAFPDQLPPF-PYMGRREPSPPGMYMG-XXXX 297
             EAL QIT+RL+H   R ++PS+N P +  F DQLPPF PY+GRR  SPPGMY       
Sbjct: 474  HEALLQITTRLKHHFFRDSYPSVNYPSNSPFLDQLPPFPPYLGRRGLSPPGMYSDLGPPP 533

Query: 296  XXXXXXXXXRSAFAQNIHRQG-PPHSSGRIHSSAPWEPQGVIDVGGPMGMSEYAGGAPQR 120
                     R AF  NIHR G PPH S R     PW P GV++ G P+G+ ++  G P+R
Sbjct: 534  SHAGFPLDDRPAFLNNIHRPGLPPHISQR----KPWGPLGVLEGGTPIGLPDFPRGPPRR 589

Query: 119  --RFGGGSQHAXXXXXXXXXXVPRAIVPSIYGEDGSSLKQI 3
               F GGSQ            VPRA+VP IYGEDG  LKQI
Sbjct: 590  ISGFAGGSQ-PIITSTTVEVVVPRAVVPVIYGEDGECLKQI 629