BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002987
         (1040 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512901.1| pentatricopeptide repeat-containing protein,...    71   4e-21
ref|XP_004158532.1| PREDICTED: pentatricopeptide repeat-containi...    65   1e-19
ref|XP_004138797.1| PREDICTED: pentatricopeptide repeat-containi...    65   1e-19
emb|CBI21323.3| unnamed protein product [Vitis vinifera]               60   3e-17
ref|XP_002274670.1| PREDICTED: pentatricopeptide repeat-containi...    60   3e-17

>ref|XP_002512901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547912|gb|EEF49404.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 655

 Score = 70.9 bits (172), Expect(2) = 4e-21
 Identities = 31/46 (67%), Positives = 37/46 (80%)
 Frame = -1

Query: 923 EVCNSLLAALASDGYVDFAKKMFDEMFVRGICFSTVGFGVFIGKFC 786
           E+CNSLLA L SDGY D   K+FDEM +RG+ F+TVGFGVFI +FC
Sbjct: 156 EICNSLLAVLGSDGYFDKGLKVFDEMLLRGVAFNTVGFGVFIWRFC 201



 Score = 57.8 bits (138), Expect(2) = 4e-21
 Identities = 27/40 (67%), Positives = 34/40 (85%)
 Frame = -2

Query: 721 SMINGSVIAVLIIDGLCKVGRVHEASRVLDELRSRDCKPD 602
           S+INGSVIAVL++ GLC+  RV+EA  VL+ELR R+CKPD
Sbjct: 221 SVINGSVIAVLVVHGLCQASRVNEALWVLNELRIRNCKPD 260


>ref|XP_004158532.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g14080-like [Cucumis sativus]
          Length = 640

 Score = 65.1 bits (157), Expect(2) = 1e-19
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = -1

Query: 923 EVCNSLLAALASDGYVDFAKKMFDEMFVRGICFSTVGFGVFIGKFC 786
           E+CNSLLAALASDG+ + A+K+FDEM ++ I F+T+GFGVFI + C
Sbjct: 154 ELCNSLLAALASDGFFEHAQKVFDEMSLKSIPFNTLGFGVFIWRIC 199



 Score = 58.2 bits (139), Expect(2) = 1e-19
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = -2

Query: 721 SMINGSVIAVLIIDGLCKVGRVHEASRVLDELRSRDCKPD 602
           S INGSVIA LII GLC+  R+ EAS +LDEL++R CKPD
Sbjct: 219 SDINGSVIATLIIHGLCEASRLEEASNILDELKNRGCKPD 258


>ref|XP_004138797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g14080-like [Cucumis sativus]
          Length = 635

 Score = 65.1 bits (157), Expect(2) = 1e-19
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = -1

Query: 923 EVCNSLLAALASDGYVDFAKKMFDEMFVRGICFSTVGFGVFIGKFC 786
           E+CNSLLAALASDG+ + A+K+FDEM ++ I F+T+GFGVFI + C
Sbjct: 154 ELCNSLLAALASDGFFEHAQKVFDEMSLKSIPFNTLGFGVFIWRIC 199



 Score = 58.2 bits (139), Expect(2) = 1e-19
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = -2

Query: 721 SMINGSVIAVLIIDGLCKVGRVHEASRVLDELRSRDCKPD 602
           S INGSVIA LII GLC+  R+ EAS +LDEL++R CKPD
Sbjct: 219 SDINGSVIATLIIHGLCEASRLEEASNILDELKNRGCKPD 258


>emb|CBI21323.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score = 59.7 bits (143), Expect(2) = 3e-17
 Identities = 26/46 (56%), Positives = 37/46 (80%)
 Frame = -1

Query: 923 EVCNSLLAALASDGYVDFAKKMFDEMFVRGICFSTVGFGVFIGKFC 786
           + CNSL+AALASDG V +A+++FDEM   G+  +++GFGVFI +FC
Sbjct: 154 DTCNSLVAALASDGCVVYAQRVFDEMIHHGVPLNSLGFGVFIWRFC 199



 Score = 55.8 bits (133), Expect(2) = 3e-17
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = -2

Query: 721 SMINGSVIAVLIIDGLCKVGRVHEASRVLDELRSRDCKPDSQLMLGFTQITQIK 560
           S INGS+IA+LII GLC+V RV EA  +L+ELRSR+ KPD       T+  ++K
Sbjct: 219 SEINGSIIALLIIHGLCQVSRVSEAFELLEELRSREYKPDFMAYRIVTEAFRLK 272


>ref|XP_002274670.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080
           [Vitis vinifera]
          Length = 660

 Score = 59.7 bits (143), Expect(2) = 3e-17
 Identities = 26/46 (56%), Positives = 37/46 (80%)
 Frame = -1

Query: 923 EVCNSLLAALASDGYVDFAKKMFDEMFVRGICFSTVGFGVFIGKFC 786
           + CNSL+AALASDG V +A+++FDEM   G+  +++GFGVFI +FC
Sbjct: 154 DTCNSLVAALASDGCVVYAQRVFDEMIHHGVPLNSLGFGVFIWRFC 199



 Score = 55.8 bits (133), Expect(2) = 3e-17
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = -2

Query: 721 SMINGSVIAVLIIDGLCKVGRVHEASRVLDELRSRDCKPDSQLMLGFTQITQIK 560
           S INGS+IA+LII GLC+V RV EA  +L+ELRSR+ KPD       T+  ++K
Sbjct: 219 SEINGSIIALLIIHGLCQVSRVSEAFELLEELRSREYKPDFMAYRIVTEAFRLK 272