BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002892
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22077.1|RBS_FAGCR RecName: Full=Ribulose bisphosphate carbox...    72   5e-11
gb|AAF19793.1|AF162210_1 ribulose-1,5-bisphosphate carboxylase/o...    71   8e-11
gb|AFS41744.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...    71   1e-10
gb|AFS41729.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...    71   1e-10
gb|AFS41724.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...    71   1e-10

>sp|O22077.1|RBS_FAGCR RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|2588890|dbj|BAA23214.1| small subunit of
           ribulose-1,5-bisphosphate carboxylase/oxygenase [Fagus
           crenata]
          Length = 182

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = +1

Query: 196 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITS 327
           I SA +A+V+R TPAQA+MVAPFTGLKSTAAFP TRK NNDITS
Sbjct: 6   ISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITS 49


>gb|AAF19793.1|AF162210_1 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Lactuca sativa]
          Length = 181

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/47 (72%), Positives = 40/47 (85%)
 Frame = +1

Query: 187 MASIPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITS 327
           MASI S+A+A+VNR TPAQAS+ APFTGLKS  AFPVT+K NND +S
Sbjct: 1   MASISSSAVATVNRSTPAQASLAAPFTGLKSNVAFPVTKKANNDFSS 47


>gb|AFS41744.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           (chloroplast) [Gossypium tomentosum]
          Length = 182

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = +1

Query: 196 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITS 327
           I SA IA+VNR +PAQA+MVAPFTGLKS +AFPVTRK NNDITS
Sbjct: 6   ISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITS 49


>gb|AFS41729.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           (chloroplast) [Gossypium hirsutum]
           gi|406366478|gb|AFS41736.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit (chloroplast)
           [Gossypium barbadense] gi|406366508|gb|AFS41751.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit (chloroplast) [Gossypium mustelinum]
          Length = 182

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = +1

Query: 196 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITS 327
           I SA IA+VNR +PAQA+MVAPFTGLKS +AFPVTRK NNDITS
Sbjct: 6   ISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITS 49


>gb|AFS41724.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           (chloroplast) [Gossypium raimondii]
          Length = 182

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = +1

Query: 196 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITS 327
           I SA IA+VNR +PAQA+MVAPFTGLKS +AFPVTRK NNDITS
Sbjct: 6   ISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITS 49