BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002847
         (905 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containi...   421   e-115
emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]   421   e-115
ref|XP_004137115.1| PREDICTED: pentatricopeptide repeat-containi...   405   e-111
ref|XP_004166669.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   400   e-109
ref|XP_002303271.1| predicted protein [Populus trichocarpa] gi|2...   399   e-109

>ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690
            [Vitis vinifera]
          Length = 593

 Score =  421 bits (1082), Expect = e-115
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 6/307 (1%)
 Frame = -2

Query: 904  HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLNRDLDSWHAMLNGYAANGLG 725
            H    +S  R DL L N ++EMYG C SM +A++VF+ M NRD+DSWH M+NGYA N +G
Sbjct: 271  HDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMANRDMDSWHLMINGYANNAMG 330

Query: 724  DDGLHLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 545
            DDGL L+E+MRKLGL+PNE+TFLAV + C SA+A+EE F+HF+ MK EYGI+P+ EHYVG
Sbjct: 331  DDGLQLYEQMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVG 390

Query: 544  IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSM 365
            I+DVLGK G+V EA+E++E+MP EP+  +WE LM  A++HGDIDLED AEELMV L P  
Sbjct: 391  IIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLK 450

Query: 364  ANXXXXXXXXXXKRSAISLLDGKNRVNEYRHLPPYKNEEK------PKEQGYVPDTRYVL 203
            A           KR+AI++LDGKNR++E+R+   YK++EK       KE GYVPDTRYVL
Sbjct: 451  AVANKTPTPPPKKRTAINMLDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPDTRYVL 510

Query: 202  HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMAKIVGRE 23
            HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR+CGDCHNAIKIM+KIVGRE
Sbjct: 511  HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRE 570

Query: 22   LIVRDNK 2
            LIVRDNK
Sbjct: 571  LIVRDNK 577


>emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]
          Length = 627

 Score =  421 bits (1082), Expect = e-115
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 6/307 (1%)
 Frame = -2

Query: 904  HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLNRDLDSWHAMLNGYAANGLG 725
            H    +S  R DL L N ++EMYG C SM +A++VF+ M NRD+DSWH M+NGYA N +G
Sbjct: 305  HDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMTNRDMDSWHLMINGYANNAMG 364

Query: 724  DDGLHLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 545
            DDGL L+E+MRKLGL+PNE+TFLAV + C SA+A+EE F+HF+ MK EYGI+P+ EHYVG
Sbjct: 365  DDGLQLYEQMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVG 424

Query: 544  IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSM 365
            I+DVLGK G+V EA+E++E+MP EP+  +WE LM  A++HGDIDLED AEELMV L P  
Sbjct: 425  IIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLK 484

Query: 364  ANXXXXXXXXXXKRSAISLLDGKNRVNEYRHLPPYKNEEK------PKEQGYVPDTRYVL 203
            A           KR+AI++LDGKNR++E+R+   YK++EK       KE GYVPDTRYVL
Sbjct: 485  AVANKTPTPPPKKRTAINMLDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPDTRYVL 544

Query: 202  HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMAKIVGRE 23
            HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR+CGDCHNAIKIM+KIVGRE
Sbjct: 545  HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRE 604

Query: 22   LIVRDNK 2
            LIVRDNK
Sbjct: 605  LIVRDNK 611


>ref|XP_004137115.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like
            [Cucumis sativus]
          Length = 688

 Score =  405 bits (1040), Expect = e-111
 Identities = 199/307 (64%), Positives = 243/307 (79%), Gaps = 6/307 (1%)
 Frame = -2

Query: 904  HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLNRDLDSWHAMLNGYAANGLG 725
            H    +S  R DL L N ++EMYG+C SM++A++VF+ M +R +DSWH M+ GYA NGLG
Sbjct: 366  HDYFLQSSCRSDLQLNNEVLEMYGRCGSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLG 425

Query: 724  DDGLHLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 545
            D+GL LFE M+ LGL+PN +TFL V +AC SA+A+EE FL+F+ MKN+Y I+P   HY+G
Sbjct: 426  DEGLELFENMKNLGLQPNSQTFLYVMSACASANAVEEGFLYFESMKNDYHITPDTNHYLG 485

Query: 544  IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSM 365
            ++ +LG+ G++ EA EYVEK+P EPTVE+WETL   AR+HGD+DLED AEEL+V L P+ 
Sbjct: 486  LLGILGEPGHIHEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTK 545

Query: 364  ANXXXXXXXXXXKRSAISLLDGKNRVNEYRHLPPYKNEEK------PKEQGYVPDTRYVL 203
            A           KRSAIS+LDGKNR+ E+R+   YK++EK       KEQGYVPDTRYVL
Sbjct: 546  AVSNKISTPPPKKRSAISMLDGKNRIVEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVL 605

Query: 202  HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMAKIVGRE 23
            HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIM++IVGRE
Sbjct: 606  HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRE 665

Query: 22   LIVRDNK 2
            LIVRDNK
Sbjct: 666  LIVRDNK 672


>ref|XP_004166669.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At2g15690-like [Cucumis sativus]
          Length = 588

 Score =  400 bits (1028), Expect = e-109
 Identities = 196/307 (63%), Positives = 240/307 (78%), Gaps = 6/307 (1%)
 Frame = -2

Query: 904  HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLNRDLDSWHAMLNGYAANGLG 725
            H    +S  R DL L N ++EMYG+C SM++A++VF+ M +R +DSWH M+ GYA NGLG
Sbjct: 266  HDYFLQSSCRSDLQLNNEVLEMYGRCGSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLG 325

Query: 724  DDGLHLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 545
            D+GL LFE M+ LGL+PN +TFL V +AC SA+A+EE FL+F+ MKN+Y I+P   HY+G
Sbjct: 326  DEGLELFENMKNLGLQPNSQTFLYVMSACASANAVEEGFLYFESMKNDYHITPDTNHYLG 385

Query: 544  IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSM 365
            ++ +LG+ G++ EA EYVEK+P EPTVE+WETL   AR+HGD+DLED AEEL+V L P+ 
Sbjct: 386  LLGILGEPGHIHEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTK 445

Query: 364  ANXXXXXXXXXXKRSAISLLDGKNRVNEYRHLPPYKNEEK------PKEQGYVPDTRYVL 203
            A             SAIS+LDGKNR+ E+R+   YK++ K       KEQGYVPDTRYVL
Sbjct: 446  AVSNKISTPPPKNXSAISMLDGKNRIVEFRNPTLYKDDXKLKALKAMKEQGYVPDTRYVL 505

Query: 202  HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMAKIVGRE 23
            HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIM++IVGRE
Sbjct: 506  HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRE 565

Query: 22   LIVRDNK 2
            LIVRDNK
Sbjct: 566  LIVRDNK 572


>ref|XP_002303271.1| predicted protein [Populus trichocarpa] gi|222840703|gb|EEE78250.1|
           predicted protein [Populus trichocarpa]
          Length = 334

 Score =  399 bits (1024), Expect = e-109
 Identities = 201/307 (65%), Positives = 240/307 (78%), Gaps = 6/307 (1%)
 Frame = -2

Query: 904 HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLNRDLDSWHAMLNGYAANGLG 725
           H    +S  RGD+ L NN+I+MYGKC SM +A++VF+ M  R++DSWH M+N YA N LG
Sbjct: 12  HDYFLQSTFRGDVKLNNNVIKMYGKCGSMADARRVFDHMPERNMDSWHLMINEYANNDLG 71

Query: 724 DDGLHLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 545
           D+GL LFE+M+KLGL+P  +TF AV +AC SA+A+EE FL+F+ M  E+GISP++EHY+ 
Sbjct: 72  DEGLELFEQMKKLGLEPTGETFHAVLSACASAEAVEEGFLYFEEMSREFGISPTLEHYLS 131

Query: 544 IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSM 365
           I+DVLGK  Y+ EA EY+EK+PFEPTVEIWE L K AR HGDIDLED AEEL+V L  S 
Sbjct: 132 IIDVLGKSAYLNEAVEYIEKLPFEPTVEIWEALRKYARSHGDIDLEDHAEELIVSLDSSK 191

Query: 364 ANXXXXXXXXXXKRSAISLLDGKNRVNEYRHLPPYKNEEKPKE------QGYVPDTRYVL 203
           A           K + IS+L+GKNRV E+R+   YK++EK KE       GYVPDTRYVL
Sbjct: 192 AVANKIPTPPPKKYNLISMLEGKNRVAEFRNPTFYKDDEKLKELREMKTGGYVPDTRYVL 251

Query: 202 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMAKIVGRE 23
           HDIDQEAKEQALLYHSERLAIAYGLISTPAR PLRIIKNLR+CGDCHNAIKIM+KIVGRE
Sbjct: 252 HDIDQEAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLRVCGDCHNAIKIMSKIVGRE 311

Query: 22  LIVRDNK 2
           LIVRDNK
Sbjct: 312 LIVRDNK 318