BLASTX nr result
ID: Coptis23_contig00002834
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00002834
(1331 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containin... 350 5e-94
ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containin... 349 8e-94
ref|XP_003549835.1| PREDICTED: zinc finger CCCH domain-containin... 343 6e-92
ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containin... 343 6e-92
ref|XP_003634306.1| PREDICTED: zinc finger CCCH domain-containin... 335 1e-89
>ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1
[Vitis vinifera] gi|297733636|emb|CBI14883.3| unnamed
protein product [Vitis vinifera]
Length = 484
Score = 350 bits (898), Expect = 5e-94
Identities = 180/368 (48%), Positives = 228/368 (61%), Gaps = 9/368 (2%)
Frame = +2
Query: 50 YPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKTPKVLKTSLSGDSDESQQXXXX 229
YP+RP+ DC FY+RT +C FGSNCKFNHP+ KV + + +E +
Sbjct: 126 YPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRRKNQVAKEKVKEK----EKEEFPERP-- 179
Query: 230 XXXXXXXXGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECP 409
GQ ECKYYLR+GGCKFGKACRY H + K P E NFLGLPIR GE+ECP
Sbjct: 180 --------GQTECKYYLRTGGCKFGKACRYNHTKAKPSAVPVLELNFLGLPIRMGEKECP 231
Query: 410 FYMRTGSCKFASNCRFNHPDPTAGGADSGDNGTSSG---PLYSSINSQPAVASWSLPRPS 580
+YMRTGSCK+ +NCRFNHPDPTA G +G +G PL + SQ +ASWS PR
Sbjct: 232 YYMRTGSCKYGANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGA--SQSNMASWSSPRAL 289
Query: 581 ADTVPYSETSRSYVPMMMAP-QGA-HSGLEWNGYQAPLSPLYPLEGTLRPAVASSMNGSI 754
+ P +VP+M +P QG EWNGYQAPL P P E ++ P A +N +
Sbjct: 290 NEPAP-------FVPIMFSPTQGVPPPNPEWNGYQAPLYPPPPPERSMHPPPAFVINNTA 342
Query: 755 KSTDVYLPHLQQMP--VDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP--N 922
+VY H QQ +++FPERPGQ EC Y++KTGDCKF+++C+YHHPK R+ KSP
Sbjct: 343 TDANVYGHHQQQQQSLIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCT 402
Query: 923 LSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYIPPSAT 1102
LS GLPLRPDQ +C+H++RYGICK+G ACK+DH N+G+S S + + Q P
Sbjct: 403 LSDKGLPLRPDQNICTHYNRYGICKFGPACKFDHPVNYGNSASAPSAESGQDQ---PPPF 459
Query: 1103 SGGAEASG 1126
G A G
Sbjct: 460 GGSVTADG 467
Score = 71.2 bits (173), Expect = 5e-10
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Frame = +2
Query: 734 SSMNGSIKSTDVYLPHLQQMPVD-----------EFPERPGQQECQYYIKTGDCKFKSSC 880
S NG +K++D + + + ++P RP +C +Y++TG CKF S+C
Sbjct: 91 SDSNGEVKASDDEEEQCENLEDESAAKDDKSARFQYPVRPDAVDCSFYLRTGTCKFGSNC 150
Query: 881 RYHHPKARVS-----KSPNLSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHS 1027
+++HP R + K P RP Q C ++ R G CK+G AC+Y+H+
Sbjct: 151 KFNHPIRRKNQVAKEKVKEKEKEEFPERPGQTECKYYLRTGGCKFGKACRYNHT 204
>ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 490
Score = 349 bits (896), Expect = 8e-94
Identities = 184/370 (49%), Positives = 232/370 (62%), Gaps = 9/370 (2%)
Frame = +2
Query: 44 YFYPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKTPKVLKTSLSGDSDESQQXX 223
+ YPLRPE DC FY++T +C FG NCKFNHP+ + K +G+ +E+ +
Sbjct: 138 HHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIKRKSQAVKEK------AGEREETTERS 191
Query: 224 XXXXXXXXXXGQLECKYYLRSGGCKFGKACRYRHPREK--SVVGPPAEFNFLGLPIRPGE 397
G ECKYY RSGGCKFGK+C+Y H R K + P E NFLGLPIRPGE
Sbjct: 192 ----------GMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRPGE 241
Query: 398 RECPFYMRTGSCKFASNCRFNHPDPTAGGADSGD--NGTSSGPLYSSIN-SQPAVASWSL 568
RECP+YMRTGSCKF +NC+FNHPDPTA G G+ +G +G S SQ +V SWS
Sbjct: 242 RECPYYMRTGSCKFGANCKFNHPDPTAVGGGGGNPPSGYGNGGSISLQGVSQTSVPSWSS 301
Query: 569 PRPSADTVPYSETSRSYVPMMMAP-QGAHS-GLEWNGYQAPLSPLYPLEGTLRPAVASSM 742
PR + P+ VPMM++P QG + +WNGYQA + Y E ++ P M
Sbjct: 302 PRTLNEASPF-------VPMMLSPTQGVSTQSSDWNGYQASV---YLPERSIHPPSTFVM 351
Query: 743 NGSIKSTDVYLPHLQQMPVDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP- 919
N T+VY+ H +QMPVDEFPERPG+ EC +++KTGDCKFKS+C++HHPK RV++ P
Sbjct: 352 NNPAIDTNVYMHHQKQMPVDEFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVTRLPP 411
Query: 920 -NLSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYIPPS 1096
NLS GLPLRPDQ VCSH+SRYGICK+G ACK+DH N PV+ Q S
Sbjct: 412 CNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINL----QPVMIPGLEQQSYSNS 467
Query: 1097 ATSGGAEASG 1126
A++G A G
Sbjct: 468 ASAGVAGIGG 477
>ref|XP_003549835.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 501
Score = 343 bits (880), Expect = 6e-92
Identities = 174/337 (51%), Positives = 218/337 (64%), Gaps = 9/337 (2%)
Frame = +2
Query: 50 YPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKTPKVLKTSLSGDSDESQQXXXX 229
YPLRPE DC FY++T +C FG NCKFNHP+ + K +G+ +E+ +
Sbjct: 150 YPLRPEAEDCAFYIKTGNCKFGFNCKFNHPIRRKSQAVKEK------AGEREETTERS-- 201
Query: 230 XXXXXXXXGQLECKYYLRSGGCKFGKACRYRHPREK--SVVGPPAEFNFLGLPIRPGERE 403
G ECKYY RSGGCKFGK+C+Y H R K + P E NFLGLPIR GERE
Sbjct: 202 --------GMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRLGERE 253
Query: 404 CPFYMRTGSCKFASNCRFNHPDPTAGGADSGDNGT---SSGPLYSSINSQPAVASWSLPR 574
CP+YMRTGSCKF +NC+FNHPDPTA G GD + + G + SQ +V SWS PR
Sbjct: 254 CPYYMRTGSCKFGANCKFNHPDPTAVGGVGGDPASGYGNGGSISLQGVSQTSVPSWSSPR 313
Query: 575 PSADTVPYSETSRSYVPMMMAP-QGAHS-GLEWNGYQAPLSPLYPLEGTLRPAVASSMNG 748
++ P+ VPMM++P QG + +WNGYQA + Y E + P MN
Sbjct: 314 TLNESSPF-------VPMMLSPTQGVSTQSSDWNGYQASV---YLPERNMHPPSTFVMNN 363
Query: 749 SIKSTDVYLPHLQQMPVDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP--N 922
T+VY+ H +QMPVDEFPERPG+ EC Y++KTGDCKFKS+C+++HPK RV++ P N
Sbjct: 364 PAIDTNVYMHHQKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFNHPKNRVARLPPCN 423
Query: 923 LSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPN 1033
LS GLPLRPDQ VCSH+SRYGICK+G ACK+DH N
Sbjct: 424 LSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPIN 460
>ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 570
Score = 343 bits (880), Expect = 6e-92
Identities = 177/364 (48%), Positives = 228/364 (62%), Gaps = 8/364 (2%)
Frame = +2
Query: 50 YPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKTPKVLKTSLSGDSDESQQXXXX 229
YPLRPE DC FY++T +C FG NCKFNHPL +K +G+ +E +
Sbjct: 230 YPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKEN------AGEREEQAERS-- 281
Query: 230 XXXXXXXXGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECP 409
GQ+ECKYYLRSGGCKFGKAC++ H R KS E NFLGLPIR GE+EC
Sbjct: 282 --------GQMECKYYLRSGGCKFGKACKFNHTRGKSSSASATELNFLGLPIRVGEKECL 333
Query: 410 FYMRTGSCKFASNCRFNHPDPTAGGADSGDNGTSSGPLYSSIN----SQPAVASWSLPRP 577
+YMRTGSCKF +NCRFNHPDPT G +G +G SSI+ SQ +++SWS RP
Sbjct: 334 YYMRTGSCKFGANCRFNHPDPTTVGGGDSPSGYGNG---SSISLQGVSQSSISSWSSTRP 390
Query: 578 SADTVPYSETSRSYVPMMMAPQGAHS--GLEWNGYQAPLSPLYPLEGTLRPAVASSMNGS 751
++ P +VP++++P S EWNGYQA P+Y E +L P MN
Sbjct: 391 LNESAP-------FVPVILSPNPGVSPQSSEWNGYQA---PVYLSERSLHPPSTYVMNNP 440
Query: 752 IKSTDVYLPHLQQMPVDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP--NL 925
++VY+ H +QM V+EFPERPG+ EC Y++KTGDCKFKS+C++HHPK R+++ P NL
Sbjct: 441 AMESNVYMHHQKQMLVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPLCNL 500
Query: 926 SPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYIPPSATS 1105
S GLPLRPDQ VC+++ RYGICK+G ACK+DH +G ST + A +
Sbjct: 501 SDKGLPLRPDQNVCTYYRRYGICKFGPACKFDHPAPSTMAGHDQQSTYINSAGV-DVAEN 559
Query: 1106 GGAE 1117
GGAE
Sbjct: 560 GGAE 563
Score = 68.6 bits (166), Expect = 4e-09
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = +2
Query: 803 EFPERPGQQECQYYIKTGDCKFKSSCRYHHPKAR--VSKSPNLSPLGLPL-RPDQLVCSH 973
++P RP ++C +Y+KTG CKF +C+++HP R +K N R Q+ C +
Sbjct: 229 QYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKENAGEREEQAERSGQMECKY 288
Query: 974 FSRYGICKYGAACKYDHSPNHGSSGS 1051
+ R G CK+G ACK++H+ SS S
Sbjct: 289 YLRSGGCKFGKACKFNHTRGKSSSAS 314
>ref|XP_003634306.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 2
[Vitis vinifera]
Length = 481
Score = 335 bits (860), Expect = 1e-89
Identities = 175/368 (47%), Positives = 225/368 (61%), Gaps = 9/368 (2%)
Frame = +2
Query: 50 YPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKTPKVLKTSLSGDSDESQQXXXX 229
YP+RP+ DC FY+RT +C FGSNCKFNHP+ KV + + +E +
Sbjct: 126 YPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRRKNQVAKEKVKEK----EKEEFPERP-- 179
Query: 230 XXXXXXXXGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECP 409
GQ ECKYYLR+GGCKFGKACRY H + K P E NFLGLPIR GE+ECP
Sbjct: 180 --------GQTECKYYLRTGGCKFGKACRYNHTKAKPSAVPVLELNFLGLPIRMGEKECP 231
Query: 410 FYMRTGSCKFASNCRFNHPDPTAGGADSGDNGTSSG---PLYSSINSQPAVASWSLPRPS 580
+YMRTGSCK+ +NCRFNHPDPTA G +G +G PL + SQ +ASWS PR
Sbjct: 232 YYMRTGSCKYGANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGA--SQSNMASWSSPRAL 289
Query: 581 ADTVPYSETSRSYVPMMMAP-QGA-HSGLEWNGYQAPLSPLYPLEGTLRPAVASSMNGSI 754
+ P +VP+M +P QG EWNGYQ + L+ ++ P A +N +
Sbjct: 290 NEPAP-------FVPIMFSPTQGVPPPNPEWNGYQV---FMLLLKRSMHPPPAFVINNTA 339
Query: 755 KSTDVYLPHLQQMP--VDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP--N 922
+VY H QQ +++FPERPGQ EC Y++KTGDCKF+++C+YHHPK R+ KSP
Sbjct: 340 TDANVYGHHQQQQQSLIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCT 399
Query: 923 LSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYIPPSAT 1102
LS GLPLRPDQ +C+H++RYGICK+G ACK+DH N+G+S S + + Q P
Sbjct: 400 LSDKGLPLRPDQNICTHYNRYGICKFGPACKFDHPVNYGNSASAPSAESGQDQ---PPPF 456
Query: 1103 SGGAEASG 1126
G A G
Sbjct: 457 GGSVTADG 464
Score = 71.2 bits (173), Expect = 5e-10
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Frame = +2
Query: 734 SSMNGSIKSTDVYLPHLQQMPVD-----------EFPERPGQQECQYYIKTGDCKFKSSC 880
S NG +K++D + + + ++P RP +C +Y++TG CKF S+C
Sbjct: 91 SDSNGEVKASDDEEEQCENLEDESAAKDDKSARFQYPVRPDAVDCSFYLRTGTCKFGSNC 150
Query: 881 RYHHPKARVS-----KSPNLSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHS 1027
+++HP R + K P RP Q C ++ R G CK+G AC+Y+H+
Sbjct: 151 KFNHPIRRKNQVAKEKVKEKEKEEFPERPGQTECKYYLRTGGCKFGKACRYNHT 204