BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002698
         (2320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s...   725   0.0  
ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arab...   721   0.0  
ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|2...   719   0.0  
ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|2...   718   0.0  
ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex s...   717   0.0  

>ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]
          Length = 586

 Score =  725 bits (1871), Expect = 0.0
 Identities = 363/452 (80%), Positives = 389/452 (86%)
 Frame = -2

Query: 2157 KQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRYGV 1978
            K  ++LIKPQSFTP+LDTSQWPILLKNYDRLNVRTGHYTPLPSG+SPLKRPL  YIRYG+
Sbjct: 35   KDGEFLIKPQSFTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGI 94

Query: 1977 INLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 1798
            +NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK
Sbjct: 95   LNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 154

Query: 1797 EYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADK 1618
            EYVC+ARLHS+VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD D+
Sbjct: 155  EYVCVARLHSSVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDR 214

Query: 1617 HLIVFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVRSGIMGEKDNMVTMHDVMDAQW 1438
            HL+VFWISCEAGTYVRT+C           HMQELRRVRSGI+GEKDNMVTMHDVMDAQW
Sbjct: 215  HLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQW 274

Query: 1437 VFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGE 1258
            V+DN RDE+YLRRVIMPLEV+LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGE
Sbjct: 275  VYDNYRDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGE 334

Query: 1257 EVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKK 1078
            EVVLMTTKGEAIALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRA+MKKK
Sbjct: 335  EVVLMTTKGEAIALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAAMKKK 394

Query: 1077 MVAEGLLDKHGKPNEKTPAEWSRNVVLPAGGDTMVAGHAAATEPIPAXXXXXXXXXXXXX 898
            ++ EG L+KHGKPNE TP+EW RNVVLP GGD+MVA  AAA EP                
Sbjct: 395  LITEGKLNKHGKPNENTPSEWLRNVVLPTGGDSMVASLAAAVEP---------TVKAETD 445

Query: 897  XXXXXXXXXEAPKTEDNNASPAPVPTKKIKVE 802
                        K  ++   P  VP KKIK E
Sbjct: 446  VKEEIDGEQRKRKLNESTDDPVTVPAKKIKKE 477


>ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
            gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA
            ribonucleoprotein complex subunit 4; AltName: Full=CBF5
            homolog; AltName: Full=Dyskerin; AltName:
            Full=Nopp-140-associated protein of 57 kDa homolog;
            Short=AtNAP57; AltName: Full=Nucleolar protein NAP57
            homolog gi|8901186|gb|AAF43210.2|AF234984_1 putative
            pseudouridine synthase [Arabidopsis thaliana]
            gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis
            thaliana] gi|28392852|gb|AAO41863.1| unknown protein
            [Arabidopsis thaliana] gi|225898727|dbj|BAH30494.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332646100|gb|AEE79621.1| H/ACA ribonucleoprotein
            complex subunit 4 [Arabidopsis thaliana]
          Length = 565

 Score =  721 bits (1860), Expect = 0.0
 Identities = 360/456 (78%), Positives = 394/456 (86%)
 Frame = -2

Query: 2166 DPPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 1987
            D     DY+IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G SPLKRPL+ YIR
Sbjct: 20   DAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIR 79

Query: 1986 YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 1807
            YGVINLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG
Sbjct: 80   YGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 139

Query: 1806 AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 1627
            AGKEYVC+ARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD
Sbjct: 140  AGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 199

Query: 1626 ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVRSGIMGEKDNMVTMHDVMD 1447
            AD+HL+VFW+SCEAGTY+RTMC           HMQELRRVRSGI+GE +NMVTMHDVMD
Sbjct: 200  ADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMD 259

Query: 1446 AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1267
            AQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN+I+
Sbjct: 260  AQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDID 319

Query: 1266 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1087
             G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM
Sbjct: 320  VGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 379

Query: 1086 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPAGGDTMVAGHAAATEPIPAXXXXXXXXXX 907
            KKK++A+G LDKHGKPNEKTP EWSRNVVLP GGD ++AG AAA E I A          
Sbjct: 380  KKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEA 439

Query: 906  XXXXXXXXXXXXEAPKTEDNNASPAPVPTKKIKVEE 799
                           K +D++ SPAPV TKK K +E
Sbjct: 440  RKR------------KHDDSSDSPAPVTTKKSKTKE 463


>ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|222854887|gb|EEE92434.1|
            predicted protein [Populus trichocarpa]
          Length = 593

 Score =  719 bits (1857), Expect = 0.0
 Identities = 366/460 (79%), Positives = 392/460 (85%), Gaps = 1/460 (0%)
 Frame = -2

Query: 2175 PIVDPPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLEL 1996
            P  D  K  D++IKPQ+FTPT+DTSQWPILLKNYDRLNVRTGHYTPLPSG SPLKRPL  
Sbjct: 27   PTTDTDK--DFMIKPQNFTPTIDTSQWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLAE 84

Query: 1995 YIRYGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 1816
            YIRYG++NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKS
Sbjct: 85   YIRYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 144

Query: 1815 QQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 1636
            QQGAGKEYVCIARLH  VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL
Sbjct: 145  QQGAGKEYVCIARLHDKVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 204

Query: 1635 EYDADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVRSGIMGEKDNMVTMHD 1456
            EYDAD+HL+VFWISCEAGTYVRTMC           HMQELRRVRSGI+GEKDNMVTMHD
Sbjct: 205  EYDADRHLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSGILGEKDNMVTMHD 264

Query: 1455 VMDAQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN 1276
            VMDAQWV+DN RDE+YLRR IMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN
Sbjct: 265  VMDAQWVYDNYRDESYLRRAIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN 324

Query: 1275 EIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR 1096
            +IE GEEVVLMTTKGEA+ALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR
Sbjct: 325  DIEAGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR 384

Query: 1095 ASMKKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPAGGDTMVAG-HAAATEPIPAXXXXXX 919
            AS+KKK+++EG LDKHGKPNE TP EW RN+VLP GGD+MVAG  AAA EP+        
Sbjct: 385  ASIKKKLISEGKLDKHGKPNENTPHEWMRNLVLPPGGDSMVAGIAAAAAEPVVKEIGEEE 444

Query: 918  XXXXXXXXXXXXXXXXEAPKTEDNNASPAPVPTKKIKVEE 799
                            +  ++ D+ A  A VP KK K EE
Sbjct: 445  KKKKNKDGEDGEGRKRKLNESSDSPA--AQVPAKKTKTEE 482


>ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|222867894|gb|EEF05025.1|
            predicted protein [Populus trichocarpa]
          Length = 482

 Score =  718 bits (1853), Expect = 0.0
 Identities = 352/402 (87%), Positives = 376/402 (93%)
 Frame = -2

Query: 2148 DYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRYGVINL 1969
            D++IKPQ+FTPT+DTSQWPILLKNYDRLNVRTGHYTPLP G SPLKRPL  YIRYGV+NL
Sbjct: 22   DFMIKPQNFTPTIDTSQWPILLKNYDRLNVRTGHYTPLPCGHSPLKRPLAEYIRYGVMNL 81

Query: 1968 DKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 1789
            DKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV
Sbjct: 82   DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 141

Query: 1788 CIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLI 1609
            CIARLH  + DV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHL+
Sbjct: 142  CIARLHDKIADVTKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLV 201

Query: 1608 VFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVFD 1429
            VFWISCEAGTYVRTMC           HMQELRRVRSGI+GEKDNMVTMHDVMDAQWV+D
Sbjct: 202  VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYD 261

Query: 1428 NNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVV 1249
            N RDE+YLRRVIMPLEV+LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN+IE GEEVV
Sbjct: 262  NYRDESYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVV 321

Query: 1248 LMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMVA 1069
            LMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGP+AS+KKK+++
Sbjct: 322  LMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASIKKKLIS 381

Query: 1068 EGLLDKHGKPNEKTPAEWSRNVVLPAGGDTMVAGHAAATEPI 943
            EG LDKHGKPN+ TP EW+RN+VLPAGGD+MVAG AAA EP+
Sbjct: 382  EGKLDKHGKPNDNTPHEWARNLVLPAGGDSMVAGLAAAAEPV 423


>ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
            max]
          Length = 589

 Score =  717 bits (1851), Expect = 0.0
 Identities = 358/448 (79%), Positives = 387/448 (86%)
 Frame = -2

Query: 2142 LIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRYGVINLDK 1963
            +IKPQSFTP +DTSQWPILLKNY+RLNVRTGHYTP+PSG+SPLKRPL  Y++YGV+NLDK
Sbjct: 34   MIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLDK 93

Query: 1962 PANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI 1783
            PANPSSHEVVAWIKRLLR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI
Sbjct: 94   PANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI 153

Query: 1782 ARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLIVF 1603
            ARLHS VPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD D+HL+VF
Sbjct: 154  ARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVF 213

Query: 1602 WISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVFDNN 1423
            WISCEAGTYVRTMC           HMQELRRVRSGIMGEKDNMV+MHDVMDAQWV+DN 
Sbjct: 214  WISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNY 273

Query: 1422 RDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLM 1243
            RDE YLRRV+MPLE+LLTSYKRLVVKDSAVNAICYGAK MIPGLLRFEN+I+ GEEVVLM
Sbjct: 274  RDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLM 333

Query: 1242 TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMVAEG 1063
            TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKK++++EG
Sbjct: 334  TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEG 393

Query: 1062 LLDKHGKPNEKTPAEWSRNVVLPAGGDTMVAGHAAATEPIPAXXXXXXXXXXXXXXXXXX 883
             LDKHGKPNEKTP EW RN+VLP GGD+++AG AAA EP                     
Sbjct: 394  KLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEP-----------EDDKIQKKEG 442

Query: 882  XXXXEAPKTEDNNASPAPVPTKKIKVEE 799
                +  K  ++  SP  VP KK+KV+E
Sbjct: 443  DGEGKKRKKHESTDSPVAVPAKKVKVDE 470