BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002617
         (2071 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ...   331   4e-88
ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v...   330   1e-87
emb|CBI26376.3| unnamed protein product [Vitis vinifera]              330   1e-87
dbj|BAF03494.1| XRCC4 homolog [Populus nigra]                         322   3e-85
ref|XP_002315726.1| predicted protein [Populus trichocarpa] gi|2...   314   7e-83

>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
            gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
            putative [Ricinus communis]
          Length = 265

 Score =  331 bits (849), Expect = 4e-88
 Identities = 164/254 (64%), Positives = 203/254 (79%), Gaps = 3/254 (1%)
 Frame = +1

Query: 1312 ERTKAAATFKSLKEKAEEI*NTDVIFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERA 1491
            E +K     ++ +    ++  T+ IFVKGTWFDSHF+LSITDGLNAW+C A+E  V+ERA
Sbjct: 2    ETSKITTEAETARHTCLKLEITEPIFVKGTWFDSHFHLSITDGLNAWVCNATEGQVKERA 61

Query: 1492 SQWDQPVSEYIETAEQYLGFRQPGSSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKSSS 1671
            +QWDQPVSEYI  AE YLGF+QPGS Y F+DAG+  +RLSWTFEK+G KLEWRWKC+ S 
Sbjct: 62   AQWDQPVSEYINLAEHYLGFQQPGSIYRFADAGDSHKRLSWTFEKEGTKLEWRWKCQPSP 121

Query: 1672 DNKKTTTEILDFLMDANIRLSEEVVRKTQSFEKLKEEAEKCLVQSEKFSREKGEFESAVY 1851
            DNK TT  ILDFLMDANIRLSEEVV+KT SFE+LKEEA+KCL QSE+F+ EK EFES++Y
Sbjct: 122  DNKMTTAGILDFLMDANIRLSEEVVKKTHSFERLKEEADKCLTQSERFAGEKTEFESSIY 181

Query: 1852 AKFVAVLNSKKAKLRELRDRLSKQDDTGKSPQ--EDESAGKTESFDEE-TDNDRSEGEAV 2022
            AKF+AVLNSKK KLR+LRD+LSK++ +GK PQ  E+ES  KTESF+E+ +D D+SE E  
Sbjct: 182  AKFLAVLNSKKRKLRQLRDQLSKKEASGKLPQEEEEESTDKTESFEEDSSDGDKSEEEPP 241

Query: 2023 ESHPGTSKTVPATR 2064
            E   GTS+  P++R
Sbjct: 242  EKVTGTSEDKPSSR 255


>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
          Length = 259

 Score =  330 bits (845), Expect = 1e-87
 Identities = 160/231 (69%), Positives = 193/231 (83%), Gaps = 1/231 (0%)
 Frame = +1

Query: 1375 TDVIFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETAEQYLGFR 1554
            ++ IF+K TWF SHF+LSITDGL+AW+C ASED+V ERA+QWDQPVS+YI  AE++LGF+
Sbjct: 18   SEPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSDYIALAERFLGFQ 77

Query: 1555 QPGSSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKSSSDNKKTTTEILDFLMDANIRLS 1734
            QPGS Y FSDAG+G RRLSWTFEK+G KLEWRWKC  S D++ TT  +LDFLM+ANIRLS
Sbjct: 78   QPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRSTTAGVLDFLMNANIRLS 137

Query: 1735 EEVVRKTQSFEKLKEEAEKCLVQSEKFSREKGEFESAVYAKFVAVLNSKKAKLRELRDRL 1914
            EEVV KTQSFE+LK EAEKCL QSEKF+ EK EFESA+YAKF+ VLNSKKAKLRELRD++
Sbjct: 138  EEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLGVLNSKKAKLRELRDQI 197

Query: 1915 SKQDDTGKSPQ-EDESAGKTESFDEETDNDRSEGEAVESHPGTSKTVPATR 2064
            SK++ TGK PQ EDES  KT SFD+E+DN+  E E+ ++  GTSK V  +R
Sbjct: 198  SKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVSTSR 248


>emb|CBI26376.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score =  330 bits (845), Expect = 1e-87
 Identities = 160/231 (69%), Positives = 193/231 (83%), Gaps = 1/231 (0%)
 Frame = +1

Query: 1375 TDVIFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETAEQYLGFR 1554
            ++ IF+K TWF SHF+LSITDGL+AW+C ASED+V ERA+QWDQPVS+YI  AE++LGF+
Sbjct: 18   SEPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSDYIALAERFLGFQ 77

Query: 1555 QPGSSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKSSSDNKKTTTEILDFLMDANIRLS 1734
            QPGS Y FSDAG+G RRLSWTFEK+G KLEWRWKC  S D++ TT  +LDFLM+ANIRLS
Sbjct: 78   QPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRSTTAGVLDFLMNANIRLS 137

Query: 1735 EEVVRKTQSFEKLKEEAEKCLVQSEKFSREKGEFESAVYAKFVAVLNSKKAKLRELRDRL 1914
            EEVV KTQSFE+LK EAEKCL QSEKF+ EK EFESA+YAKF+ VLNSKKAKLRELRD++
Sbjct: 138  EEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLGVLNSKKAKLRELRDQI 197

Query: 1915 SKQDDTGKSPQ-EDESAGKTESFDEETDNDRSEGEAVESHPGTSKTVPATR 2064
            SK++ TGK PQ EDES  KT SFD+E+DN+  E E+ ++  GTSK V  +R
Sbjct: 198  SKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVSTSR 248


>dbj|BAF03494.1| XRCC4 homolog [Populus nigra]
          Length = 255

 Score =  322 bits (824), Expect = 3e-85
 Identities = 156/229 (68%), Positives = 187/229 (81%)
 Frame = +1

Query: 1384 IFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETAEQYLGFRQPG 1563
            IF+KGTWF  HFNLSITDGLN+W C A+E++V  RA+QWDQPVS YI+ AE++LGF+ PG
Sbjct: 19   IFIKGTWFPFHFNLSITDGLNSWFCNATEEEVRGRAAQWDQPVSTYIQLAEKHLGFQIPG 78

Query: 1564 SSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKSSSDNKKTTTEILDFLMDANIRLSEEV 1743
            S Y F+DAG G++RLSWTFEK+G KLEWRWKC+ S D KKTTT ILDFLMDANIRLSEEV
Sbjct: 79   SVYKFTDAGEGNKRLSWTFEKEGTKLEWRWKCQPSPDTKKTTTLILDFLMDANIRLSEEV 138

Query: 1744 VRKTQSFEKLKEEAEKCLVQSEKFSREKGEFESAVYAKFVAVLNSKKAKLRELRDRLSKQ 1923
            VRKTQSFE+LK EAEKCL QSEKF+ +K EFE+AVYAKF+ VLNSKK KLRELRD+LSK+
Sbjct: 139  VRKTQSFERLKGEAEKCLAQSEKFNSQKMEFEAAVYAKFLGVLNSKKRKLRELRDQLSKK 198

Query: 1924 DDTGKSPQEDESAGKTESFDEETDNDRSEGEAVESHPGTSKTVPATRQY 2070
            + +G+S QE E + KTESFD  +D+++S  +  E   GTSK  P  R Y
Sbjct: 199  EISGESAQEGEDSDKTESFDRGSDDEKSVEKPREKLAGTSKDPPPRRGY 247


>ref|XP_002315726.1| predicted protein [Populus trichocarpa] gi|222864766|gb|EEF01897.1|
            predicted protein [Populus trichocarpa]
          Length = 233

 Score =  314 bits (804), Expect = 7e-83
 Identities = 148/208 (71%), Positives = 180/208 (86%)
 Frame = +1

Query: 1384 IFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETAEQYLGFRQPG 1563
            IF+KGTWF  HFNLSITDGLN+W C A+E++V +RA+QWDQPVS YI+ AE++LGF+ PG
Sbjct: 19   IFIKGTWFPFHFNLSITDGLNSWFCNATEEEVRDRAAQWDQPVSTYIQLAEKHLGFQIPG 78

Query: 1564 SSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKSSSDNKKTTTEILDFLMDANIRLSEEV 1743
            S Y F+DAG G++RLSWTFEK+G KLEWRWKC+ S D KKTTT ILDFLMDANIRLSEEV
Sbjct: 79   SVYKFTDAGEGNKRLSWTFEKEGTKLEWRWKCQPSPDTKKTTTLILDFLMDANIRLSEEV 138

Query: 1744 VRKTQSFEKLKEEAEKCLVQSEKFSREKGEFESAVYAKFVAVLNSKKAKLRELRDRLSKQ 1923
            VRKTQSFE+LK EAEKCL QSEKF+ +K EFE+AVYAKF+ VLNSKK KLRELRD+LSK+
Sbjct: 139  VRKTQSFEQLKGEAEKCLAQSEKFNSQKMEFEAAVYAKFLGVLNSKKRKLRELRDQLSKK 198

Query: 1924 DDTGKSPQEDESAGKTESFDEETDNDRS 2007
            + +G+S QE+E + KTESFD  +D+++S
Sbjct: 199  EISGESAQEEEDSDKTESFDRGSDDEKS 226