BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002587
         (930 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279657.2| PREDICTED: 50S ribosomal protein L6, chlorop...   339   6e-91
ref|XP_004144493.1| PREDICTED: 50S ribosomal protein L6, chlorop...   338   1e-90
ref|XP_002320459.1| predicted protein [Populus trichocarpa] gi|2...   334   2e-89
ref|XP_003548188.1| PREDICTED: 50S ribosomal protein L6, chlorop...   332   8e-89
ref|XP_003548187.1| PREDICTED: 50S ribosomal protein L6, chlorop...   329   6e-88

>ref|XP_002279657.2| PREDICTED: 50S ribosomal protein L6, chloroplastic-like [Vitis
           vinifera] gi|297739290|emb|CBI28941.3| unnamed protein
           product [Vitis vinifera]
          Length = 226

 Score =  339 bits (869), Expect = 6e-91
 Identities = 169/217 (77%), Positives = 191/217 (88%), Gaps = 3/217 (1%)
 Frame = +3

Query: 75  MASSLTSS---CNLRSDFLGKRNRIHVAVVPITHVGFSRKIVECKESRIGKHPIEVPTTV 245
           MASS+T S    NLRS FLG+RN I+V+ VP+T VGF RK +ECKESRIGK PIEVP+ V
Sbjct: 1   MASSITPSFQTSNLRSAFLGERNGIYVSSVPVTRVGFLRKTIECKESRIGKKPIEVPSNV 60

Query: 246 TLTLEGQSLNVKGPLGELSRSYPREVKLERLESGQIKVSKAMDTRRANQMHGLFRTLTDN 425
           T+TLEGQ L VKGPLGELSR+YPREVK+++ ESG + V KA +TRRANQMHGLFRTLTDN
Sbjct: 61  TITLEGQDLKVKGPLGELSRTYPREVKVQKDESGILTVKKAFETRRANQMHGLFRTLTDN 120

Query: 426 MVVGVSKGFEKKLQLVGVGYRAMLENRDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 605
           MVVGVSKGFEK+LQLVGVGYRA +E +DLVLNLGFSHPVRM IP  L+VKVE+NTRI VS
Sbjct: 121 MVVGVSKGFEKRLQLVGVGYRATVEGKDLVLNLGFSHPVRMPIPGDLKVKVEDNTRIIVS 180

Query: 606 GYDKCSIGEFAASVRKWRPPEPYKGKGIKYADEIVRR 716
           GYDKC+IG+FAASVRKWRPPEPYKGKG+KYADEIVRR
Sbjct: 181 GYDKCNIGQFAASVRKWRPPEPYKGKGVKYADEIVRR 217


>ref|XP_004144493.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like [Cucumis
           sativus] gi|449515641|ref|XP_004164857.1| PREDICTED: 50S
           ribosomal protein L6, chloroplastic-like [Cucumis
           sativus]
          Length = 233

 Score =  338 bits (866), Expect = 1e-90
 Identities = 161/212 (75%), Positives = 189/212 (89%)
 Frame = +3

Query: 81  SSLTSSCNLRSDFLGKRNRIHVAVVPITHVGFSRKIVECKESRIGKHPIEVPTTVTLTLE 260
           +S+ S  N RS FLG++N   V+ +P  H+G  RK +ECKESRIGK PI+VP++VT+TL+
Sbjct: 13  TSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQPIQVPSSVTITLQ 72

Query: 261 GQSLNVKGPLGELSRSYPREVKLERLESGQIKVSKAMDTRRANQMHGLFRTLTDNMVVGV 440
           GQ L VKGPLGELS  YPREVK+ER +SG I+V KA++TRRANQMHGLFRTLTDNMVVGV
Sbjct: 73  GQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGV 132

Query: 441 SKGFEKKLQLVGVGYRAMLENRDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKC 620
           SKGFEKKLQL+GVGYRAM+E +DLVLNLGFSHPVRMAIPDG+Q+KVEENTRITVSGYDKC
Sbjct: 133 SKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKC 192

Query: 621 SIGEFAASVRKWRPPEPYKGKGIKYADEIVRR 716
           +IG+FAAS+R+WRPPEPYKGKG+KYADEIVRR
Sbjct: 193 AIGQFAASIRQWRPPEPYKGKGVKYADEIVRR 224


>ref|XP_002320459.1| predicted protein [Populus trichocarpa] gi|222861232|gb|EEE98774.1|
           predicted protein [Populus trichocarpa]
          Length = 227

 Score =  334 bits (857), Expect = 2e-89
 Identities = 166/215 (77%), Positives = 190/215 (88%), Gaps = 3/215 (1%)
 Frame = +3

Query: 78  ASSLTSS---CNLRSDFLGKRNRIHVAVVPITHVGFSRKIVECKESRIGKHPIEVPTTVT 248
           +SS+TSS    NLRS FLG+RNRI V  VP+T +GF RK +ECKESRIGK PI+VP+ VT
Sbjct: 3   SSSITSSFQTSNLRSVFLGERNRICVPSVPVTRIGFLRKAIECKESRIGKQPIQVPSNVT 62

Query: 249 LTLEGQSLNVKGPLGELSRSYPREVKLERLESGQIKVSKAMDTRRANQMHGLFRTLTDNM 428
           + LEGQ L VKGPLGELSR+YPREVKLER E G I+V KA++TRRANQMHGLFRTLTDNM
Sbjct: 63  IKLEGQDLKVKGPLGELSRTYPREVKLERDEDGIIRVKKALETRRANQMHGLFRTLTDNM 122

Query: 429 VVGVSKGFEKKLQLVGVGYRAMLENRDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSG 608
           VVGVSKGFEK+LQLVGVGYRA +E +DLVL+LGFSHPVRMAIP  LQVKVEENTRI VSG
Sbjct: 123 VVGVSKGFEKRLQLVGVGYRANVEGKDLVLSLGFSHPVRMAIPATLQVKVEENTRIVVSG 182

Query: 609 YDKCSIGEFAASVRKWRPPEPYKGKGIKYADEIVR 713
           +DKCSIGEFAAS+R+WRPPEPYKGKG++YA+EI+R
Sbjct: 183 FDKCSIGEFAASIRRWRPPEPYKGKGVRYANEIIR 217


>ref|XP_003548188.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like isoform 2
           [Glycine max]
          Length = 223

 Score =  332 bits (851), Expect = 8e-89
 Identities = 159/214 (74%), Positives = 189/214 (88%)
 Frame = +3

Query: 75  MASSLTSSCNLRSDFLGKRNRIHVAVVPITHVGFSRKIVECKESRIGKHPIEVPTTVTLT 254
           MASS+TSS  +RS F+G+ N++ V+ VP  HVGF+RK VECKESRIGK PI VP+ VT+ 
Sbjct: 1   MASSVTSSFRIRSVFVGETNKLRVSSVPGAHVGFNRKTVECKESRIGKQPIPVPSNVTVK 60

Query: 255 LEGQSLNVKGPLGELSRSYPREVKLERLESGQIKVSKAMDTRRANQMHGLFRTLTDNMVV 434
           LEGQ + VKGPLGEL+ +YPREV +ER ESG ++V KA++TRRANQMHGLFRTLTDN+V+
Sbjct: 61  LEGQDIQVKGPLGELALTYPREVLVEREESGTLRVKKAVETRRANQMHGLFRTLTDNLVI 120

Query: 435 GVSKGFEKKLQLVGVGYRAMLENRDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYD 614
           GVSKGF+KKLQLVGVGYRAM+E  ++VLNLGFSHPV+M IPDGL+VKVEENTRITVSGYD
Sbjct: 121 GVSKGFDKKLQLVGVGYRAMVEGNEVVLNLGFSHPVKMTIPDGLKVKVEENTRITVSGYD 180

Query: 615 KCSIGEFAASVRKWRPPEPYKGKGIKYADEIVRR 716
           K  +G+FAAS+RKWRPPEPYKGKG+KYADEIVRR
Sbjct: 181 KSEVGQFAASIRKWRPPEPYKGKGVKYADEIVRR 214


>ref|XP_003548187.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like isoform 1
           [Glycine max]
          Length = 226

 Score =  329 bits (843), Expect = 6e-88
 Identities = 160/217 (73%), Positives = 190/217 (87%), Gaps = 3/217 (1%)
 Frame = +3

Query: 75  MASSLTSS---CNLRSDFLGKRNRIHVAVVPITHVGFSRKIVECKESRIGKHPIEVPTTV 245
           MASS+TSS    NL+S F+G+ N++ V+ VP  HVGF+RK VECKESRIGK PI VP+ V
Sbjct: 1   MASSVTSSFRISNLKSVFVGETNKLRVSSVPGAHVGFNRKTVECKESRIGKQPIPVPSNV 60

Query: 246 TLTLEGQSLNVKGPLGELSRSYPREVKLERLESGQIKVSKAMDTRRANQMHGLFRTLTDN 425
           T+ LEGQ + VKGPLGEL+ +YPREV +ER ESG ++V KA++TRRANQMHGLFRTLTDN
Sbjct: 61  TVKLEGQDIQVKGPLGELALTYPREVLVEREESGTLRVKKAVETRRANQMHGLFRTLTDN 120

Query: 426 MVVGVSKGFEKKLQLVGVGYRAMLENRDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 605
           +V+GVSKGF+KKLQLVGVGYRAM+E  ++VLNLGFSHPV+M IPDGL+VKVEENTRITVS
Sbjct: 121 LVIGVSKGFDKKLQLVGVGYRAMVEGNEVVLNLGFSHPVKMTIPDGLKVKVEENTRITVS 180

Query: 606 GYDKCSIGEFAASVRKWRPPEPYKGKGIKYADEIVRR 716
           GYDK  +G+FAAS+RKWRPPEPYKGKG+KYADEIVRR
Sbjct: 181 GYDKSEVGQFAASIRKWRPPEPYKGKGVKYADEIVRR 217