BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002578
         (1157 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284989.1| PREDICTED: proteasome subunit beta type-4 is...   439   e-121
ref|XP_002889738.1| 20S proteasome beta subunit PBG1 [Arabidopsi...   416   e-114
ref|XP_002891960.1| hypothetical protein ARALYDRAFT_474808 [Arab...   413   e-113
ref|XP_004149546.1| PREDICTED: proteasome subunit beta type-4-li...   412   e-113
gb|AAC32074.1| 20S proteasome beta subunit PBG1 [Arabidopsis tha...   411   e-112

>ref|XP_002284989.1| PREDICTED: proteasome subunit beta type-4 isoform 1 [Vitis
           vinifera] gi|297746225|emb|CBI16281.3| unnamed protein
           product [Vitis vinifera]
          Length = 245

 Score =  439 bits (1129), Expect = e-121
 Identities = 206/232 (88%), Positives = 224/232 (96%)
 Frame = -3

Query: 987 LGSELDSQRTLNPYVTGTSVVGIKYKDGILMASDMGGSYGSTLRYKSVERLKPIGKHSLL 808
           L S+ DSQRTL PYVTGTSV+G+KYKDGILMA+DMGGSYGSTLRYKSVER+KPIGKHSLL
Sbjct: 14  LCSQADSQRTLYPYVTGTSVIGVKYKDGILMAADMGGSYGSTLRYKSVERMKPIGKHSLL 73

Query: 807 GASGEISDFQEILRYLDELIIYDNMWDDGNSLGPKEIHNYLNRVMYNRRNKFDPLWNSLV 628
           GASGEISDFQEIL YLDELI+YDNMWDDGNSLGPKE+H+YL RVMYNRRNKF+PLWNSLV
Sbjct: 74  GASGEISDFQEILHYLDELILYDNMWDDGNSLGPKEVHSYLTRVMYNRRNKFNPLWNSLV 133

Query: 627 LGGVKNGQKYLGTVSMIGVHFEDNHIATGFGNHLARPILRDEWKEDMSFEEGVKLLEKCM 448
           LGGVKNGQKYLGTVSMIGVHFEDNH+ATGFGNHLARPILRDEW ED+SFE+GVKLLEKCM
Sbjct: 134 LGGVKNGQKYLGTVSMIGVHFEDNHVATGFGNHLARPILRDEWHEDLSFEDGVKLLEKCM 193

Query: 447 LVLLYRDRSAINKLQIAKITEEGITVSQPYALKTFWGFTAYQNPTKGAEGSW 292
            VLLYRDRSA+NKLQIAKITEEG+T+SQPY+LKTFWGF+A+QNPT GAEGSW
Sbjct: 194 RVLLYRDRSAVNKLQIAKITEEGVTISQPYSLKTFWGFSAFQNPTVGAEGSW 245


>ref|XP_002889738.1| 20S proteasome beta subunit PBG1 [Arabidopsis lyrata subsp. lyrata]
            gi|297335580|gb|EFH65997.1| 20S proteasome beta subunit
            PBG1 [Arabidopsis lyrata subsp. lyrata]
          Length = 245

 Score =  416 bits (1069), Expect = e-114
 Identities = 197/241 (81%), Positives = 222/241 (92%)
 Frame = -3

Query: 1014 LKMDSGKGLLGSELDSQRTLNPYVTGTSVVGIKYKDGILMASDMGGSYGSTLRYKSVERL 835
            + +++G G+  +E DSQRTL PYVTGTSVV IKYKDGILMASDMGGSYGSTLRYK++ER+
Sbjct: 5    IPIENGNGVKNAEADSQRTLYPYVTGTSVVAIKYKDGILMASDMGGSYGSTLRYKNIERM 64

Query: 834  KPIGKHSLLGASGEISDFQEILRYLDELIIYDNMWDDGNSLGPKEIHNYLNRVMYNRRNK 655
            K IGKHSLLGASGEISDFQEILRYLDEL++ DNMWDDGNSLGPKE+ NYL RV+YNRRNK
Sbjct: 65   KAIGKHSLLGASGEISDFQEILRYLDELMLNDNMWDDGNSLGPKEVLNYLTRVVYNRRNK 124

Query: 654  FDPLWNSLVLGGVKNGQKYLGTVSMIGVHFEDNHIATGFGNHLARPILRDEWKEDMSFEE 475
            F+PLWN+LV+GGVK G+KYLG VSMIGV FEDNH+ATGFGNHLARPILRDEW+ED+SFEE
Sbjct: 125  FNPLWNTLVVGGVKYGEKYLGMVSMIGVSFEDNHVATGFGNHLARPILRDEWREDLSFEE 184

Query: 474  GVKLLEKCMLVLLYRDRSAINKLQIAKITEEGITVSQPYALKTFWGFTAYQNPTKGAEGS 295
            GVKLLEKCM VLLYRDRSAINKLQIAK+TEEG+TVS+PY+LKTFW F A+ NPT GAEGS
Sbjct: 185  GVKLLEKCMRVLLYRDRSAINKLQIAKMTEEGVTVSEPYSLKTFWDFKAFTNPTVGAEGS 244

Query: 294  W 292
            W
Sbjct: 245  W 245


>ref|XP_002891960.1| hypothetical protein ARALYDRAFT_474808 [Arabidopsis lyrata subsp.
            lyrata] gi|297337802|gb|EFH68219.1| hypothetical protein
            ARALYDRAFT_474808 [Arabidopsis lyrata subsp. lyrata]
          Length = 246

 Score =  413 bits (1062), Expect = e-113
 Identities = 196/243 (80%), Positives = 222/243 (91%)
 Frame = -3

Query: 1020 VSLKMDSGKGLLGSELDSQRTLNPYVTGTSVVGIKYKDGILMASDMGGSYGSTLRYKSVE 841
            +++ +D+G  +  +E +SQRTL PYVTGTS+V IKYKDG+LMASDMGGSYGSTLRYK++E
Sbjct: 4    LTVPIDNGDSVKIAEEESQRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIE 63

Query: 840  RLKPIGKHSLLGASGEISDFQEILRYLDELIIYDNMWDDGNSLGPKEIHNYLNRVMYNRR 661
            R+K IGKHSLLGASGEISDFQEILRYLDEL + DNMWDDGNSLGPKEIHNYL RVMYNRR
Sbjct: 64   RVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRR 123

Query: 660  NKFDPLWNSLVLGGVKNGQKYLGTVSMIGVHFEDNHIATGFGNHLARPILRDEWKEDMSF 481
            NKF+PLWN+LVLGGVKNG+ YLG VSMIGV FED+H+ATGFGNHLARPILRDEW  D+SF
Sbjct: 124  NKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSF 183

Query: 480  EEGVKLLEKCMLVLLYRDRSAINKLQIAKITEEGITVSQPYALKTFWGFTAYQNPTKGAE 301
            E+GVKLLEKCM VLLYRDRSAINKLQIAKITEEG+TVSQPY+LKTFW F+++ NPT GAE
Sbjct: 184  EDGVKLLEKCMRVLLYRDRSAINKLQIAKITEEGVTVSQPYSLKTFWEFSSFHNPTAGAE 243

Query: 300  GSW 292
            GSW
Sbjct: 244  GSW 246


>ref|XP_004149546.1| PREDICTED: proteasome subunit beta type-4-like [Cucumis sativus]
          Length = 245

 Score =  412 bits (1060), Expect = e-113
 Identities = 194/234 (82%), Positives = 216/234 (92%)
 Frame = -3

Query: 993 GLLGSELDSQRTLNPYVTGTSVVGIKYKDGILMASDMGGSYGSTLRYKSVERLKPIGKHS 814
           GLL  E   QRT  PYVTGTSVV IKYKDGILM SD+GGSYGSTLRYKSVER+K IGKHS
Sbjct: 12  GLLCPEAPIQRTQYPYVTGTSVVAIKYKDGILMVSDLGGSYGSTLRYKSVERIKAIGKHS 71

Query: 813 LLGASGEISDFQEILRYLDELIIYDNMWDDGNSLGPKEIHNYLNRVMYNRRNKFDPLWNS 634
           LLGASGEISDFQ++LR LD+LI+YDNMWDDGN+LGPKEIH+YL RVMYNRRNKFDP WN+
Sbjct: 72  LLGASGEISDFQQLLRDLDQLILYDNMWDDGNALGPKEIHSYLTRVMYNRRNKFDPYWNA 131

Query: 633 LVLGGVKNGQKYLGTVSMIGVHFEDNHIATGFGNHLARPILRDEWKEDMSFEEGVKLLEK 454
           LVLGGVKNGQKYLGTV+MIGV FEDNH+ TGFGNHLARPILRDEW+ED++FEEGVKLLEK
Sbjct: 132 LVLGGVKNGQKYLGTVNMIGVTFEDNHVTTGFGNHLARPILRDEWREDLTFEEGVKLLEK 191

Query: 453 CMLVLLYRDRSAINKLQIAKITEEGITVSQPYALKTFWGFTAYQNPTKGAEGSW 292
           CM VLLYRDRSA+NKLQIAKITEEG+T+SQPY+LKTFW ++A++NPT GAEGSW
Sbjct: 192 CMRVLLYRDRSAVNKLQIAKITEEGVTISQPYSLKTFWNYSAFENPTSGAEGSW 245


>gb|AAC32074.1| 20S proteasome beta subunit PBG1 [Arabidopsis thaliana]
          Length = 246

 Score =  411 bits (1057), Expect = e-112
 Identities = 196/242 (80%), Positives = 220/242 (90%)
 Frame = -3

Query: 1017 SLKMDSGKGLLGSELDSQRTLNPYVTGTSVVGIKYKDGILMASDMGGSYGSTLRYKSVER 838
            S+ +D+G  +  +E +SQRTL PYVTGTSVV IKYKDG+LMASDMGGSYGSTLRYK++ER
Sbjct: 5    SVPIDNGDSMKIAEEESQRTLYPYVTGTSVVAIKYKDGVLMASDMGGSYGSTLRYKNIER 64

Query: 837  LKPIGKHSLLGASGEISDFQEILRYLDELIIYDNMWDDGNSLGPKEIHNYLNRVMYNRRN 658
            +K IGKHSLLGASGEISDFQEILRYLDEL + DNMWDDGNSLGPKEIHNYL RVMYNRRN
Sbjct: 65   VKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRN 124

Query: 657  KFDPLWNSLVLGGVKNGQKYLGTVSMIGVHFEDNHIATGFGNHLARPILRDEWKEDMSFE 478
            KF+PLWN+LVLGGVKNG+ YLG VSMIGV FED+H+ATGFGNHLARPILRDEW  D+SFE
Sbjct: 125  KFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFE 184

Query: 477  EGVKLLEKCMLVLLYRDRSAINKLQIAKITEEGITVSQPYALKTFWGFTAYQNPTKGAEG 298
            +GVKLLEKCM VLLYRDRSAINKLQIAKITEEG+TVSQPY+LKT+W F+++ NPT GA G
Sbjct: 185  DGVKLLEKCMRVLLYRDRSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAG 244

Query: 297  SW 292
            SW
Sbjct: 245  SW 246