BLASTX nr result
ID: Coptis23_contig00002563
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00002563
(1047 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI18917.3| unnamed protein product [Vitis vinifera] 496 e-138
ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containi... 496 e-138
emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera] 494 e-137
ref|XP_002523825.1| pentatricopeptide repeat-containing protein,... 484 e-134
ref|XP_002307751.1| predicted protein [Populus trichocarpa] gi|2... 481 e-133
>emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 496 bits (1278), Expect = e-138
Identities = 239/301 (79%), Positives = 267/301 (88%)
Frame = +1
Query: 1 AEEAQSFFNSLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSIV 180
A EAQSFF+SLKD+FEPDV++YTSLV+GWCRAGNI +AERVF EMK GIQPNVYTYSIV
Sbjct: 197 AIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIV 256
Query: 181 IDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLDC 360
IDALCR GQI+RAHDVF+EMIDVGC PN+ITFNNLMRVHVKAGRTEKVLQVYNQMKRL C
Sbjct: 257 IDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGC 316
Query: 361 PADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVNAAHR 540
P D ITYNFLIESHCRDDNLEEA K+LN VKKGC+ NAS+FNPIF CI KL DVN+AHR
Sbjct: 317 PPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHR 375
Query: 541 MYTKMKEMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFC 720
M+ KMK++KC PNTVTYN+LM+MFA+ KS DMV KL++EMDENE+EPN NTYRVLIS FC
Sbjct: 376 MFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFC 435
Query: 721 RIGHWVRAHKFLIEMLEEKCLRPTLPMYESVLLHLRKAKQIKKHEELVEKMVDRGFVTRP 900
IGHW A+ F EM+EEKCLRP+LP+YE VL LRKA Q+KKHEELVEKMV+RGFVTRP
Sbjct: 436 GIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFVTRP 495
Query: 901 L 903
L
Sbjct: 496 L 496
>ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 496 bits (1278), Expect = e-138
Identities = 239/301 (79%), Positives = 267/301 (88%)
Frame = +1
Query: 1 AEEAQSFFNSLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSIV 180
A EAQSFF+SLKD+FEPDV++YTSLV+GWCRAGNI +AERVF EMK GIQPNVYTYSIV
Sbjct: 232 AIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIV 291
Query: 181 IDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLDC 360
IDALCR GQI+RAHDVF+EMIDVGC PN+ITFNNLMRVHVKAGRTEKVLQVYNQMKRL C
Sbjct: 292 IDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGC 351
Query: 361 PADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVNAAHR 540
P D ITYNFLIESHCRDDNLEEA K+LN VKKGC+ NAS+FNPIF CI KL DVN+AHR
Sbjct: 352 PPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHR 410
Query: 541 MYTKMKEMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFC 720
M+ KMK++KC PNTVTYN+LM+MFA+ KS DMV KL++EMDENE+EPN NTYRVLIS FC
Sbjct: 411 MFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFC 470
Query: 721 RIGHWVRAHKFLIEMLEEKCLRPTLPMYESVLLHLRKAKQIKKHEELVEKMVDRGFVTRP 900
IGHW A+ F EM+EEKCLRP+LP+YE VL LRKA Q+KKHEELVEKMV+RGFVTRP
Sbjct: 471 GIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFVTRP 530
Query: 901 L 903
L
Sbjct: 531 L 531
Score = 75.5 bits (184), Expect = 2e-11
Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 38/246 (15%)
Frame = +1
Query: 133 MKEVGIQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSI----TFNNLMRVHV 300
++E G P Y I + G++ R D+ ++ID+ + N TF L+R +V
Sbjct: 139 LEEFGHSPEPYMEMIDL-----AGKV-RQFDLAWQLIDLMKTRNVEIPVETFTILVRRYV 192
Query: 301 KAGRTEKVLQVYNQMKRLDC----------------------------------PADTIT 378
KAG + + +N+M+ C D +
Sbjct: 193 KAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVV 252
Query: 379 YNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVNAAHRMYTKMK 558
Y L+ CR N+ EA +V +M G N T++ + + + + AH ++++M
Sbjct: 253 YTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMI 312
Query: 559 EMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFCRIGHWV 738
++ C PN +T+N LM++ + + V ++ +M P+ TY LI CR +
Sbjct: 313 DVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLE 372
Query: 739 RAHKFL 756
A K L
Sbjct: 373 EAVKIL 378
>emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 494 bits (1272), Expect = e-137
Identities = 238/301 (79%), Positives = 266/301 (88%)
Frame = +1
Query: 1 AEEAQSFFNSLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSIV 180
A EAQSFF+SLKD+FEPDV++YTSLV+GWCRAGNI +AERVF EMK GI PNVYTYSIV
Sbjct: 1264 AIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIV 1323
Query: 181 IDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLDC 360
IDALCR GQI+RAHDVF+EMIDVGC PN+ITFNNLMRVHVKAGRTEKVLQVYNQMKRL C
Sbjct: 1324 IDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGC 1383
Query: 361 PADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVNAAHR 540
P D ITYNFLIESHCRDDNLEEA K+LN VKKGC+ NAS+FNPIF CI KL DVN+AHR
Sbjct: 1384 PPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHR 1442
Query: 541 MYTKMKEMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFC 720
M+ KMK++KC PNTVTYN+LM+MFA+ KS DMV KL++EMDENE+EPN NTYRVLIS FC
Sbjct: 1443 MFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFC 1502
Query: 721 RIGHWVRAHKFLIEMLEEKCLRPTLPMYESVLLHLRKAKQIKKHEELVEKMVDRGFVTRP 900
IGHW A+ F EM+EEKCLRP+LP+YE VL LRKA Q+KKHEELVEKMV+RGFVTRP
Sbjct: 1503 GIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFVTRP 1562
Query: 901 L 903
L
Sbjct: 1563 L 1563
Score = 75.1 bits (183), Expect = 3e-11
Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 38/246 (15%)
Frame = +1
Query: 133 MKEVGIQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSI----TFNNLMRVHV 300
++E G P Y I + G++ R D+ ++ID+ + N TF L+R +V
Sbjct: 1171 LEEFGHSPEPYMEMIDL-----AGKV-RQFDLAWQLIDLMKTRNVEIPVETFTILVRRYV 1224
Query: 301 KAGRTEKVLQVYNQMKRLDC----------------------------------PADTIT 378
KAG + + +N+M+ C D +
Sbjct: 1225 KAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVV 1284
Query: 379 YNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVNAAHRMYTKMK 558
Y L+ CR N+ EA +V +M G N T++ + + + + AH ++++M
Sbjct: 1285 YTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMI 1344
Query: 559 EMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFCRIGHWV 738
++ C PN +T+N LM++ + + V ++ +M P+ TY LI CR +
Sbjct: 1345 DVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLE 1404
Query: 739 RAHKFL 756
A K L
Sbjct: 1405 EAVKIL 1410
>ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536913|gb|EEF38551.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 528
Score = 484 bits (1246), Expect = e-134
Identities = 229/301 (76%), Positives = 261/301 (86%)
Frame = +1
Query: 1 AEEAQSFFNSLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSIV 180
A EAQSFF+SLKDKFEPDVI+YT+LV GWCRAGNI +AERVF EMK G PNVYTY+IV
Sbjct: 228 ATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIV 287
Query: 181 IDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLDC 360
IDALCRCGQI+RAHDVFAEM+DVGC PNSITFNNL+RVHVKAGRTEKVLQVYNQMKR+ C
Sbjct: 288 IDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGC 347
Query: 361 PADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVNAAHR 540
P DT+TYNFLIESHC+D NL+EA KVLN MVKKGCS NASTFN +F I KL+DVN AHR
Sbjct: 348 PPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHR 407
Query: 541 MYTKMKEMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFC 720
+Y KMKE+KC NTVTYN+LM+MF + KS DMV KLK+EMDE++VEPNVNTY VLI+++C
Sbjct: 408 LYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYC 467
Query: 721 RIGHWVRAHKFLIEMLEEKCLRPTLPMYESVLLHLRKAKQIKKHEELVEKMVDRGFVTRP 900
+GHW A+KF EM+EEKCL+P+LP+YE VL LRKA Q+KKHEELV MVDRGF TRP
Sbjct: 468 GMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVDRGFATRP 527
Query: 901 L 903
L
Sbjct: 528 L 528
Score = 115 bits (289), Expect = 1e-23
Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 2/291 (0%)
Frame = +1
Query: 7 EAQSFFN--SLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSIV 180
+A SFFN + + F Y +++ + N D +V MK ++ ++ T+SI+
Sbjct: 124 QALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSIL 183
Query: 181 IDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLDC 360
I R G S A F M D C P+ I F+ L+ + + R + ++ +K
Sbjct: 184 IRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDKFE 243
Query: 361 PADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVNAAHR 540
P D I Y L+ CR N+ EA +V +M GC N T+ + + + + AH
Sbjct: 244 P-DVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHD 302
Query: 541 MYTKMKEMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFC 720
++ +M ++ C PN++T+N L+++ + + V ++ +M P+ TY LI C
Sbjct: 303 VFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHC 362
Query: 721 RIGHWVRAHKFLIEMLEEKCLRPTLPMYESVLLHLRKAKQIKKHEELVEKM 873
+ G+ A K L M+++ C P + + + K + + L KM
Sbjct: 363 KDGNLDEALKVLNSMVKKGC-SPNASTFNGLFGSIAKLRDVNGAHRLYAKM 412
>ref|XP_002307751.1| predicted protein [Populus trichocarpa] gi|222857200|gb|EEE94747.1|
predicted protein [Populus trichocarpa]
Length = 480
Score = 481 bits (1237), Expect = e-133
Identities = 224/301 (74%), Positives = 260/301 (86%)
Frame = +1
Query: 1 AEEAQSFFNSLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSIV 180
A +AQ FF+SLKDKFEPDVI+YT+LV GWCRAGNI +AERVF EMK GI+PNVYTYSIV
Sbjct: 180 ASQAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIV 239
Query: 181 IDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLDC 360
ID+LCRCGQI+RAHD+FAEM+D GC PNSIT+N+LMR+HVKAGRTEKVLQVYNQMKRL C
Sbjct: 240 IDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGC 299
Query: 361 PADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVNAAHR 540
DT+TYNFLIE+HC+D+NLE+A KV+ M KKGC+ NASTFN +F CI KL DVNAAHR
Sbjct: 300 EPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHR 359
Query: 541 MYTKMKEMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFC 720
MY KMKE+ C NTVTYN LMKMF KS DMV KLK EMDEN++EPNVNTY+VLI+++C
Sbjct: 360 MYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYC 419
Query: 721 RIGHWVRAHKFLIEMLEEKCLRPTLPMYESVLLHLRKAKQIKKHEELVEKMVDRGFVTRP 900
+GHW A+KF EM++EKCLRP+LP+Y+ VL LRKA Q+KKHEELVEKMVDRGFVTRP
Sbjct: 420 GMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEKMVDRGFVTRP 479
Query: 901 L 903
L
Sbjct: 480 L 480
Score = 80.1 bits (196), Expect = 8e-13
Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 34/235 (14%)
Frame = +1
Query: 271 TFNNLMRVHVKAGRTEKVLQVYNQMKRLDCPADTITYNFLIESHCRD------------- 411
TF LMR +V+AG + + +N+M+ +C D I ++ LI CR+
Sbjct: 131 TFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSL 190
Query: 412 ---------------------DNLEEATKVLNQMVKKGCSGNASTFNPIFRCIVKLKDVN 528
N+ EA +V +M G N T++ + + + +
Sbjct: 191 KDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQIT 250
Query: 529 AAHRMYTKMKEMKCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLI 708
AH ++ +M + C PN++TYN LM++ + + V ++ +M EP+ TY LI
Sbjct: 251 RAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLI 310
Query: 709 SLFCRIGHWVRAHKFLIEMLEEKCLRPTLPMYESVLLHLRKAKQIKKHEELVEKM 873
C+ + A K +I ++ +K P + ++ + K + + +KM
Sbjct: 311 ETHCKDENLEDAIK-VIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKM 364