BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002537
         (519 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis t...   155   3e-36
ref|XP_002867605.1| hypothetical protein ARALYDRAFT_492273 [Arab...   154   9e-36
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-...   151   6e-35
ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-...   148   4e-34
emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsi...   148   5e-34

>ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis thaliana]
           gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA
           mismatch repair protein MSH3; Short=AtMSH3; AltName:
           Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1|
           Msh3 protein [Arabidopsis thaliana]
           gi|332659675|gb|AEE85075.1| DNA mismatch repair protein
           Msh3 [Arabidopsis thaliana]
          Length = 1081

 Score =  155 bits (392), Expect = 3e-36
 Identities = 91/168 (54%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
 Frame = -3

Query: 499 MVKQKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXXXXTATASFSSSKR-LRSTQLTS 323
           M KQKQQ ISRFFA                           AT SFS SKR L S  L +
Sbjct: 1   MGKQKQQTISRFFAPKPKSPTHEPNPVAESSTPPPKIS---ATVSFSPSKRKLLSDHLAA 57

Query: 322 PQQKKPKLYPHTQNSI-NPSLHQKFLQKXXXXXXXXXXXXXXXXXXXPKYTPLEQQVLQL 146
              KKPKL PHTQN + +P+LHQ+FLQ+                    KYTPLEQQV++L
Sbjct: 58  ASPKKPKLSPHTQNPVPDPNLHQRFLQRFLEPSPEEYVPETSSSR---KYTPLEQQVVEL 114

Query: 145 KEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPT 2
           K KYPDV+LM+EVGY+YRFFGEDAEIAARVLGIYAH DHNF+TAS+PT
Sbjct: 115 KSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASVPT 162


>ref|XP_002867605.1| hypothetical protein ARALYDRAFT_492273 [Arabidopsis lyrata subsp.
           lyrata] gi|297313441|gb|EFH43864.1| hypothetical protein
           ARALYDRAFT_492273 [Arabidopsis lyrata subsp. lyrata]
          Length = 1078

 Score =  154 bits (388), Expect = 9e-36
 Identities = 91/168 (54%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
 Frame = -3

Query: 499 MVKQKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXXXXTATASFSSSKR-LRSTQLTS 323
           M KQKQQ ISRFFA                           AT SFS SKR L S  L +
Sbjct: 1   MGKQKQQTISRFFAPKPKSPTQEPNPVPESSTPPPKIS---ATVSFSPSKRKLLSDHLAA 57

Query: 322 PQQKKPKLYPHTQNSI-NPSLHQKFLQKXXXXXXXXXXXXXXXXXXXPKYTPLEQQVLQL 146
              KKPKL PHTQN I +P+LHQ+FLQ+                    KYTPLEQQV++L
Sbjct: 58  ASPKKPKLSPHTQNPIPDPNLHQRFLQRFLEPSPEESVPETSSSSR--KYTPLEQQVVEL 115

Query: 145 KEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPT 2
           K KYPDV+LM+EVGY+YRFFGEDAEIAARVLGIYAH DH+F+TAS+PT
Sbjct: 116 KRKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPT 163


>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
          Length = 1070

 Score =  151 bits (381), Expect = 6e-35
 Identities = 89/166 (53%), Positives = 101/166 (60%)
 Frame = -3

Query: 499 MVKQKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXXXXTATASFSSSKRLRSTQLTSP 320
           M KQKQQVISRFFA                           AT +FS +KR  ++  T+ 
Sbjct: 1   MGKQKQQVISRFFAPKPKSPPPPPPPPPKIS----------ATVTFSPAKRRLTSNFTT- 49

Query: 319 QQKKPKLYPHTQNSINPSLHQKFLQKXXXXXXXXXXXXXXXXXXXPKYTPLEQQVLQLKE 140
            +K PKL PHTQN + PSLHQ+FLQK                     YTPLEQQVL LK 
Sbjct: 50  SRKHPKLSPHTQNPVPPSLHQRFLQKLLEPSTPQQHPASSSKPPT--YTPLEQQVLDLKA 107

Query: 139 KYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPT 2
           K+PDVLLM+EVGYKYRFFG+DAE A+RVLGIYAH DHNFLTASIPT
Sbjct: 108 KHPDVLLMVEVGYKYRFFGQDAEHASRVLGIYAHMDHNFLTASIPT 153


>ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
          Length = 1094

 Score =  148 bits (374), Expect = 4e-34
 Identities = 93/181 (51%), Positives = 106/181 (58%), Gaps = 15/181 (8%)
 Frame = -3

Query: 499 MVKQKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXXXXTATASFSSSKRLRST----Q 332
           M KQKQQVISRFFA                           AT +FS SKRL S+    Q
Sbjct: 1   MGKQKQQVISRFFAPKPKSPSLSSSSSSPAKVS--------ATVTFSPSKRLISSAIASQ 52

Query: 331 LTSPQQ-KKPKLYPHTQNSI----NPSLHQKFLQKXXXXXXXXXXXXXXXXXXXP----- 182
           LT P+  K+PKL PHT N +    NPSLHQ+FL K                         
Sbjct: 53  LTPPKSSKRPKLSPHTHNPLPSIPNPSLHQRFLDKLLEPTDDSFQPSNQNPRTSNGADPK 112

Query: 181 -KYTPLEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIP 5
            KYTPLEQQV+ LK++YPDVLLM+EVGY+YRFFG+DA IAARVLGIYAH DHNF+TASIP
Sbjct: 113 YKYTPLEQQVVDLKKRYPDVLLMVEVGYRYRFFGQDAVIAARVLGIYAHLDHNFMTASIP 172

Query: 4   T 2
           T
Sbjct: 173 T 173


>emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsis thaliana]
          Length = 1076

 Score =  148 bits (373), Expect = 5e-34
 Identities = 88/164 (53%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
 Frame = -3

Query: 499 MVKQKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXXXXTATASFSSSKR-LRSTQLTS 323
           M KQKQQ ISRFFA                           AT SFS SKR L S  L +
Sbjct: 1   MGKQKQQTISRFFAPKPKSPTHEPNPVAESSTPPPKIS---ATVSFSPSKRKLLSDHLAA 57

Query: 322 PQQKKPKLYPHTQNSI-NPSLHQKFLQKXXXXXXXXXXXXXXXXXXXPKYTPLEQQVLQL 146
              KKPKL PHTQN + +P+LHQ+FLQ+                    KYTPLEQQV++L
Sbjct: 58  ASPKKPKLSPHTQNPVPDPNLHQRFLQRFLEPSPEEYVPETSSSR---KYTPLEQQVVEL 114

Query: 145 KEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTA 14
           K KYPDV+LM+EVGY+YRFFGEDAEIAARVLGIYAH DHNF+TA
Sbjct: 115 KSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTA 158