BLASTX nr result
ID: Coptis23_contig00002478
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00002478
(454 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF34803.1|AF230739_1 retinoblastoma-like protein [Euphorbia ... 87 9e-34
ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm... 89 2e-33
sp|Q4JF75.1|RBR_SCUBA RecName: Full=Retinoblastoma-related prote... 92 4e-17
sp|Q9SLZ4.1|RBR1_PEA RecName: Full=Retinoblastoma-related protei... 91 1e-16
ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-li... 91 1e-16
>gb|AAF34803.1|AF230739_1 retinoblastoma-like protein [Euphorbia esula]
Length = 801
Score = 87.4 bits (215), Expect(3) = 9e-34
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = +2
Query: 140 PLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINTRLNGYVKL 286
PLR+SKMDALISHSS+SYYACVGESTHAYQSPSKDLTAIN RLN K+
Sbjct: 708 PLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKV 756
Score = 53.1 bits (126), Expect(3) = 9e-34
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +3
Query: 6 KSDLVRQVSNKNDGQCPVSPRVSSFPTLPDMSPKK 110
KS V +V N DGQCP SP+VS FP+LPDMSPKK
Sbjct: 663 KSTQVPEVINSKDGQCPQSPKVSPFPSLPDMSPKK 697
Score = 48.5 bits (114), Expect(3) = 9e-34
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Frame = +3
Query: 333 SKKVNSRLNFDDV--GLVSDSLVMGSLYPPNGNCTSSSG 443
++KV LNFDDV GLVSDS+V SLY NG+C SSSG
Sbjct: 753 NRKVRGTLNFDDVDVGLVSDSMVANSLYLQNGSCASSSG 791
>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
Full=Retinoblastoma-related protein
gi|223530511|gb|EEF32393.1| conserved hypothetical
protein [Ricinus communis]
Length = 1020
Score = 89.4 bits (220), Expect(3) = 2e-33
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = +2
Query: 140 PLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINTRLNG 274
PLR+SKMDALISHSS+SYYACVGESTHAYQSPSKDLTAIN RLNG
Sbjct: 927 PLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNG 971
Score = 54.3 bits (129), Expect(3) = 2e-33
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +3
Query: 3 LKSDLVRQVSNKNDGQCPVSPRVSSFPTLPDMSPKK 110
+K V +V+N DGQCP SP+VS FP+LPDMSPKK
Sbjct: 881 VKGSQVPEVNNNKDGQCPASPKVSPFPSLPDMSPKK 916
Score = 44.3 bits (103), Expect(3) = 2e-33
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +3
Query: 333 SKKVNSRLNFDDV--GLVSDSLVMGSLYPPNGNCTSSSG 443
++ + LNFDDV GLVSDS+V SLY NG+C S+SG
Sbjct: 972 NRNIRGSLNFDDVDVGLVSDSMVAKSLYLQNGSCASTSG 1010
>sp|Q4JF75.1|RBR_SCUBA RecName: Full=Retinoblastoma-related protein
gi|70568829|dbj|BAE06273.1| retinoblastoma [Scutellaria
baicalensis]
Length = 1006
Score = 92.0 bits (227), Expect = 4e-17
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = +2
Query: 140 PLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINTRLNGYVKL 286
PLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAIN RLNG K+
Sbjct: 913 PLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINNRLNGNRKV 961
Score = 58.2 bits (139), Expect = 7e-07
Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Frame = +3
Query: 18 VRQVSNKNDGQCPVSPRVSSFPTLPDMSPKKFLQRIMSLSLHYDLPRWML*SHTALEAIM 197
V + N +G P SPR SSFP+LPDMSPKK + + Y P + ++A++
Sbjct: 872 VPEAKNNTNGVNPSSPRTSSFPSLPDMSPKK----VSAAHNVYVSPL----RSSKMDALI 923
Query: 198 LVLGRVLMLIXXXXXXXXXXXXXXMGMLSWILTAMLIFCPVFLPISKKVNSRLNFDDV-- 371
R + ++ L ++KV LNFDDV
Sbjct: 924 SHSSRSYYACVGESTHAYQSPSKDLTAINNRLNG-----------NRKVRGTLNFDDVDV 972
Query: 372 GLVSDSLVMGSLYPPNGNCTSSS 440
GLV+DS+V SLY NG+C SSS
Sbjct: 973 GLVTDSVVANSLYVQNGSCASSS 995
>sp|Q9SLZ4.1|RBR1_PEA RecName: Full=Retinoblastoma-related protein 1; Short=PsRB1
gi|6681366|dbj|BAA88690.1| retinoblastoma-related protein
[Pisum sativum]
Length = 1026
Score = 90.9 bits (224), Expect = 1e-16
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 140 PLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINTRLNGYVKL 286
PLRSSKMDALISHSS+SYYACVGESTHAYQSPSKDLTAIN RLNG K+
Sbjct: 933 PLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKV 981
Score = 63.2 bits (152), Expect = 2e-08
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Frame = +3
Query: 6 KSDLVRQVSNKNDG---QCPVSPRVSSFPTLPDMSPKKFLQRIMSLSLHYDLPRWML*SH 176
++D + + +NKNDG QCP SPR+S FP+LPDMSP +++ + Y P
Sbjct: 885 RNDRIPEANNKNDGHLAQCPGSPRISPFPSLPDMSP----KKVSATHNVYVSPL----RS 936
Query: 177 TALEAIMLVLGRVLMLIXXXXXXXXXXXXXXMGMLSWILTAMLIFCPVFLPISKKVNSRL 356
+ ++A++ + + ++ L ++KV L
Sbjct: 937 SKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNG-----------NRKVRGPL 985
Query: 357 NFDDV--GLVSDSLVMGSLYPPNGNCTSSSG 443
NFDDV GLVSDS+V SLY NG+ SSSG
Sbjct: 986 NFDDVDVGLVSDSMVANSLYLQNGSSASSSG 1016
>ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
Length = 1125
Score = 90.5 bits (223), Expect = 1e-16
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 140 PLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINTRLNGYVKL 286
PLRSSKMDALISHSS+SYYACVGESTHA+QSPSKDLTAIN RLNG KL
Sbjct: 1032 PLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKL 1080
Score = 69.7 bits (169), Expect = 2e-10
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 LKSDLVRQVSNKNDGQCPVSPRVSSFPTLPDMSPKKFLQRIMSLSLHYDLPRWML*SHTA 182
+K+D V QV+N +D CP SP++S FP+LPDMSPKK + S Y P +
Sbjct: 986 MKTDRVPQVNNDSDAPCPGSPKLSPFPSLPDMSPKK----VSSAHNVYVSPL----RSSK 1037
Query: 183 LEAIMLVLGRVLMLIXXXXXXXXXXXXXXMGMLSWILTAMLIFCPVFLPISKKVNSRLNF 362
++A++ + + ++ L ++K+ LNF
Sbjct: 1038 MDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNG-----------TRKLRGTLNF 1086
Query: 363 D--DVGLVSDSLVMGSLYPPNGNCTSSSG 443
D DVGLVSDSLV SLY NG+C SSSG
Sbjct: 1087 DDADVGLVSDSLVANSLYLQNGSCGSSSG 1115