BLASTX nr result
ID: Coptis23_contig00002469
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00002469
(1871 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containi... 624 0.0
ref|XP_002515260.1| pentatricopeptide repeat-containing protein,... 625 0.0
ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containi... 599 0.0
ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containi... 598 0.0
ref|XP_002301519.1| predicted protein [Populus trichocarpa] gi|2... 623 0.0
>ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 624 bits (1610), Expect(2) = 0.0
Identities = 318/430 (73%), Positives = 366/430 (85%), Gaps = 2/430 (0%)
Frame = -2
Query: 1294 GLKPNLVTYNAVIDAFAKGGVDFSKAVEIFDEMVANGVQPDRITFNSLLAVCSRGGLWEQ 1115
GLKPNLVTYNAVIDA KGGVDF++A EIFDEM+ NGVQPDRITFNSLLAVC RGGLWE
Sbjct: 250 GLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEA 309
Query: 1114 AKNLFGEMVNRGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMTVKNVLPNVVTYSTMID 935
A+NLF EM+ RGI+QDIFTYNTLLDAVCKGGQMDLAF+IMSEM K+++PNVVTYST+ID
Sbjct: 310 ARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVID 369
Query: 934 GCAKAGKLEEALNLFDEMKHLGIRLDRVSYNTLLAIYASLGRFQEAMGICKMMERANIKK 755
G AKAG+L+EALNLF+EMK I LDRVSYNTLL+IYA LGRF+EA+ +CK ME + IKK
Sbjct: 370 GYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKK 429
Query: 754 DVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTLIDVYSKGGLYQEAMEIF 575
D VTYNALL YGKQG Y+EVK++F +MK E + PNLLTYSTLIDVYSKGGLYQEAME+F
Sbjct: 430 DAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF 489
Query: 574 RELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGKPPNVVTYNSIIDAFGRS 395
RE K+AGL+ADVVLYSALIDALCKNGLVESAVS LDEMT+EG PNVVTYNSIIDAFGRS
Sbjct: 490 REFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRS 549
Query: 394 AITKFQEGAASETDELMNESSVCMVLQNANEGK--ESNDDRVMQLFEQLAAEKAHPSKEE 221
+ ET+ SS V+++A E + + D++++++F QLAAEK +K+E
Sbjct: 550 GSAECVIDPPYETNVSKMSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKE 609
Query: 220 AKGESQELLCILGLFHKMHELNIKPNVVTFSAILNACSRCNSFEDASILLEELRLFDNQV 41
+G QE+LCIL +FHKMHEL+IKPNVVTFSAILNACSRCNSFEDAS+LLEELRLFDNQV
Sbjct: 610 NRGR-QEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV 668
Query: 40 YGVAHGLLMG 11
YGVAHGLLMG
Sbjct: 669 YGVAHGLLMG 678
Score = 231 bits (589), Expect(2) = 0.0
Identities = 116/171 (67%), Positives = 143/171 (83%), Gaps = 3/171 (1%)
Frame = -1
Query: 1871 SKSQLGVDFRGRKSTRFSSKTHFRGPKTSSGS---PAAEEALQQALRFSRDDDGSLDSVL 1701
SKS+L DF GR+STRF SK HF PKT++ + AEEAL+ A+RF+ DD G +DSVL
Sbjct: 80 SKSELTADFSGRRSTRFVSKMHFGRPKTAAAARHTSTAEEALRHAIRFASDDKG-IDSVL 138
Query: 1700 RSYESKFCGSDDYGFLLREFGNRGECSKAVRCFEFAIQREQKRNEQGKLASSMISVLGRL 1521
++ES+ CGSDDY FLLRE GNRGE +KA+RCFEFA++REQ+RNEQGKLAS+MIS+LGRL
Sbjct: 139 LNFESRLCGSDDYTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISILGRL 198
Query: 1520 GRVDLAKRVFETANRDGYGNTVYAFSALISAYGRSGCCEKALMVFDSMKKS 1368
G+V+LAK VFETA +GYGNTVYAFSALISAYGRSG C++A+ VF++MK S
Sbjct: 199 GQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSS 249
Score = 170 bits (431), Expect = 1e-39
Identities = 109/370 (29%), Positives = 193/370 (52%), Gaps = 13/370 (3%)
Frame = -2
Query: 1159 NSLLAVCSRGGLWEQAKNLFGEMVNRGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMTV 980
++++++ R G E AKN+F +N G ++ ++ L+ A + G D A ++ M
Sbjct: 189 SAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS 248
Query: 979 KNVLPNVVTYSTMIDGCAKAG-KLEEALNLFDEMKHLGIRLDRVSYNTLLAIYASLGRFQ 803
+ PN+VTY+ +ID C K G A +FDEM G++ DR+++N+LLA+ G ++
Sbjct: 249 SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWE 308
Query: 802 EAMGICKMMERANIKKDVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTLI 623
A + M I++D+ TYN LL K G D ++ +M +++ PN++TYST+I
Sbjct: 309 AARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVI 368
Query: 622 DVYSKGGLYQEAMEIFRELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGKP 443
D Y+K G EA+ +F E+K A + D V Y+ L+ K G E A+++ EM G
Sbjct: 369 DGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIK 428
Query: 442 PNVVTYNSIIDAFGRSAITK-----FQEGAASET-DELMNESSVCMVLQNANEGKESNDD 281
+ VTYN+++ +G+ + F+E A L+ S++ V +E+
Sbjct: 429 KDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEA--- 485
Query: 280 RVMQLFEQL--AAEKA----HPSKEEAKGESQELLCILGLFHKMHELNIKPNVVTFSAIL 119
M++F + A KA + + +A ++ + + +M + I+PNVVT+++I+
Sbjct: 486 --MEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSII 543
Query: 118 NACSRCNSFE 89
+A R S E
Sbjct: 544 DAFGRSGSAE 553
>ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545740|gb|EEF47244.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 878
Score = 625 bits (1611), Expect(2) = 0.0
Identities = 318/433 (73%), Positives = 367/433 (84%), Gaps = 2/433 (0%)
Frame = -2
Query: 1294 GLKPNLVTYNAVIDAFAKGGVDFSKAVEIFDEMVANGVQPDRITFNSLLAVCSRGGLWEQ 1115
GL PNLVTYNAVIDA KGGV+F K VEIFD M++NGVQPDRITFNSLLAVCSRGGLWE
Sbjct: 255 GLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEA 314
Query: 1114 AKNLFGEMVNRGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMTVKNVLPNVVTYSTMID 935
A+ LF MV++GIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEM KN+LPNVVTYSTMID
Sbjct: 315 ARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMID 374
Query: 934 GCAKAGKLEEALNLFDEMKHLGIRLDRVSYNTLLAIYASLGRFQEAMGICKMMERANIKK 755
G AK G+L++ALN+F+EMK LG+ LDRVSYNTLL++YA LGRF++A+ +CK ME A I+K
Sbjct: 375 GYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRK 434
Query: 754 DVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTLIDVYSKGGLYQEAMEIF 575
DVVTYNALL YGKQ YDEV+++F +MK ++PNLLTYSTLIDVYSKGGLY+EAME+F
Sbjct: 435 DVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVF 494
Query: 574 RELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGKPPNVVTYNSIIDAFGRS 395
RE KQAGL+ADVVLYSALIDALCKNGLVES+V+LLDEMT+EG PNVVTYNSIIDAFGRS
Sbjct: 495 REFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRS 554
Query: 394 AITKFQEGAASETDELMNESSVCMVLQNANEGK--ESNDDRVMQLFEQLAAEKAHPSKEE 221
A + + ET L ES +V+Q A E + + D+R++++F +LAAEKA +K
Sbjct: 555 ASAQCVVDDSGETTALQVESLSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEAKNS 614
Query: 220 AKGESQELLCILGLFHKMHELNIKPNVVTFSAILNACSRCNSFEDASILLEELRLFDNQV 41
K QE+LCILG+F KMHEL IKPNVVTFSAILNACSRC+SFEDAS+LLEELRLFDNQV
Sbjct: 615 GK---QEILCILGVFQKMHELKIKPNVVTFSAILNACSRCDSFEDASMLLEELRLFDNQV 671
Query: 40 YGVAHGLLMGSRE 2
YGVAHGLLMG RE
Sbjct: 672 YGVAHGLLMGYRE 684
Score = 212 bits (540), Expect(2) = 0.0
Identities = 107/169 (63%), Positives = 134/169 (79%), Gaps = 2/169 (1%)
Frame = -1
Query: 1868 KSQLGVDFRGRKSTRFSSKTHFRGPKTSSG--SPAAEEALQQALRFSRDDDGSLDSVLRS 1695
KS L DF GR+STRF SK HF PKT+ + A EALQQ +++ +DD +L++VL +
Sbjct: 87 KSDLSADFSGRRSTRFVSKLHFGRPKTNMNRHTSVALEALQQVIQYGKDDK-ALENVLLN 145
Query: 1694 YESKFCGSDDYGFLLREFGNRGECSKAVRCFEFAIQREQKRNEQGKLASSMISVLGRLGR 1515
+ES+ CG DDY FLLRE GNRG+ +KAVRCFEFA++RE +NEQGKLAS+MIS LGRLG+
Sbjct: 146 FESRLCGPDDYTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLGK 205
Query: 1514 VDLAKRVFETANRDGYGNTVYAFSALISAYGRSGCCEKALMVFDSMKKS 1368
V+LAK VF+TA ++GYG TVYAFSALISAYGRSG C +A+ VFDSMK +
Sbjct: 206 VELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSN 254
Score = 165 bits (418), Expect = 3e-38
Identities = 111/393 (28%), Positives = 202/393 (51%), Gaps = 14/393 (3%)
Frame = -2
Query: 1231 DFSKAVEIFDEMVA--NGVQPDRITFNSLLAVCSRGGLWEQAKNLFGEMVNRGIDQDIFT 1058
D +KAV F+ V +G +++++ R G E AK +F + G + ++
Sbjct: 168 DSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYA 227
Query: 1057 YNTLLDAVCKGGQMDLAFEIMSEMTVKNVLPNVVTYSTMIDGCAKAG-KLEEALNLFDEM 881
++ L+ A + G + A ++ M ++PN+VTY+ +ID C K G + ++ + +FD M
Sbjct: 228 FSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGM 287
Query: 880 KHLGIRLDRVSYNTLLAIYASLGRFQEAMGICKMMERANIKKDVVTYNALLRNYGKQGIY 701
G++ DR+++N+LLA+ + G ++ A + M I +D+ TYN LL K G
Sbjct: 288 LSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQM 347
Query: 700 DEVKKLFRDMKEENLTPNLLTYSTLIDVYSKGGLYQEAMEIFRELKQAGLEADVVLYSAL 521
D ++ +M +N+ PN++TYST+ID Y+K G +A+ +F E+K G+ D V Y+ L
Sbjct: 348 DLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTL 407
Query: 520 IDALCKNGLVESAVSLLDEMTREGKPPNVVTYNSIIDAFG--------RSAITKFQEGAA 365
+ K G E A+ + EM G +VVTYN+++ +G R + + G
Sbjct: 408 LSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRV 467
Query: 364 SETDELMNESSVCMVLQNANEGKESNDDRVMQLFEQLAAEK---AHPSKEEAKGESQELL 194
S L+ S++ V KE+ + V + F+Q + + + +A ++ +
Sbjct: 468 S--PNLLTYSTLIDVYSKGGLYKEAME--VFREFKQAGLKADVVLYSALIDALCKNGLVE 523
Query: 193 CILGLFHKMHELNIKPNVVTFSAILNACSRCNS 95
+ L +M + I+PNVVT+++I++A R S
Sbjct: 524 SSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSAS 556
>ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 599 bits (1545), Expect(2) = 0.0
Identities = 302/432 (69%), Positives = 360/432 (83%), Gaps = 1/432 (0%)
Frame = -2
Query: 1294 GLKPNLVTYNAVIDAFAKGGVDFSKAVEIFDEMVANGVQPDRITFNSLLAVCSRGGLWEQ 1115
GLKPNLVTYNAVIDA KGGV+F + VEIF+EM+ NGVQPDRIT+NSLLAVCSRGGLWE
Sbjct: 252 GLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEA 311
Query: 1114 AKNLFGEMVNRGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMTVKNVLPNVVTYSTMID 935
A+NLF EM++RGIDQD+FTYNTLLDAVCKGGQMDLA+EIM EM K +LPNVVTYSTM D
Sbjct: 312 ARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371
Query: 934 GCAKAGKLEEALNLFDEMKHLGIRLDRVSYNTLLAIYASLGRFQEAMGICKMMERANIKK 755
G AKAG+LE+ALNL++EMK LGI LDRVSYNTLL+IYA LGRF++A+ +CK M + +KK
Sbjct: 372 GYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKK 431
Query: 754 DVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTLIDVYSKGGLYQEAMEIF 575
DVVTYNALL YGKQG ++EV ++F++MK++ + PNLLTYSTLIDVYSKG LY+EAME+F
Sbjct: 432 DVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVF 491
Query: 574 RELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGKPPNVVTYNSIIDAFGRS 395
RE KQAGL+ADVVLYS LI+ALCKNGLV+SAV LLDEMT+EG PNVVTYNSIIDAFGRS
Sbjct: 492 REFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRS 551
Query: 394 AITKFQEGAASETDELMNESSVCMVLQNANEGKESNDD-RVMQLFEQLAAEKAHPSKEEA 218
+F ++E +ES M+++ +E + + DD V + ++QL +EK P+K+E
Sbjct: 552 TTAEFLVDGVGASNERQSESPTFMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKER 611
Query: 217 KGESQELLCILGLFHKMHELNIKPNVVTFSAILNACSRCNSFEDASILLEELRLFDNQVY 38
G+ +E+ IL +F KMHEL IKPNVVTFSAILNACSRC S EDAS+LLEELRLFDNQVY
Sbjct: 612 LGK-EEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELRLFDNQVY 670
Query: 37 GVAHGLLMGSRE 2
GVAHGLLMG E
Sbjct: 671 GVAHGLLMGFSE 682
Score = 211 bits (537), Expect(2) = 0.0
Identities = 109/171 (63%), Positives = 136/171 (79%), Gaps = 3/171 (1%)
Frame = -1
Query: 1871 SKSQLGVDFRGRKSTRFSSKTHFRGPK---TSSGSPAAEEALQQALRFSRDDDGSLDSVL 1701
SKS+L +F GR+STRF SK HF PK T+ S AEE L Q L+F +DD SLD++L
Sbjct: 82 SKSELASNFSGRRSTRFVSKFHFGRPKSSMTTRHSAIAEEVLHQVLQFGKDD-ASLDNIL 140
Query: 1700 RSYESKFCGSDDYGFLLREFGNRGECSKAVRCFEFAIQREQKRNEQGKLASSMISVLGRL 1521
++ESK CGS+DY FLLRE GNRGEC KA+RCF+FA+ RE ++NE+GKLAS+MIS LGRL
Sbjct: 141 LNFESKLCGSEDYTFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRL 200
Query: 1520 GRVDLAKRVFETANRDGYGNTVYAFSALISAYGRSGCCEKALMVFDSMKKS 1368
G+V+LAK VFETA +GYGNTV+AFSALISAYG+SG ++A+ VF+SMK S
Sbjct: 201 GKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVS 251
Score = 175 bits (443), Expect = 4e-41
Identities = 117/396 (29%), Positives = 197/396 (49%), Gaps = 18/396 (4%)
Frame = -2
Query: 1222 KAVEIFD-EMVANGVQPDRITFNS-LLAVCSRGGLWEQAKNLFGEMVNRGIDQDIFTYNT 1049
KA+ FD +V G + +R S +++ R G E AK +F ++ G +F ++
Sbjct: 168 KAIRCFDFALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSA 227
Query: 1048 LLDAVCKGGQMDLAFEIMSEMTVKNVLPNVVTYSTMIDGCAKAG-KLEEALNLFDEMKHL 872
L+ A K G D A ++ M V + PN+VTY+ +ID C K G + + + +F+EM
Sbjct: 228 LISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRN 287
Query: 871 GIRLDRVSYNTLLAIYASLGRFQEAMGICKMMERANIKKDVVTYNALLRNYGKQGIYDEV 692
G++ DR++YN+LLA+ + G ++ A + M I +DV TYN LL K G D
Sbjct: 288 GVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLA 347
Query: 691 KKLFRDMKEENLTPNLLTYSTLIDVYSKGGLYQEAMEIFRELKQAGLEADVVLYSALIDA 512
++ +M + + PN++TYST+ D Y+K G ++A+ ++ E+K G+ D V Y+ L+
Sbjct: 348 YEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSI 407
Query: 511 LCKNGLVESAVSLLDEMTREGKPPNVVTYNSIIDAFGRSAITKFQEGAASETDELMNESS 332
K G E A+ + EM G +VVTYN+++D +G+ +G +E + E
Sbjct: 408 YAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGK-------QGKFNEVTRVFKEMK 460
Query: 331 VCMVLQNANE--------GKESNDDRVMQLFEQLAAEKAHPSKEEAKGESQELLCILG-- 182
V N K S + M++F + + + E LC G
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREF-KQAGLKADVVLYSELINALCKNGLV 519
Query: 181 -----LFHKMHELNIKPNVVTFSAILNACSRCNSFE 89
L +M + I+PNVVT+++I++A R + E
Sbjct: 520 DSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555
Score = 103 bits (258), Expect = 1e-19
Identities = 76/300 (25%), Positives = 143/300 (47%), Gaps = 3/300 (1%)
Frame = -2
Query: 952 YSTMIDGCAKAGKLEEALNLFD-EMKHLGIRLDRVSY-NTLLAIYASLGRFQEAMGICKM 779
Y+ ++ G+ +A+ FD + G + +R + +++ LG+ + A G+ +
Sbjct: 153 YTFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRLGKVELAKGVFET 212
Query: 778 MERANIKKDVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTLIDVYSKGGL 599
V ++AL+ YGK G +DE K+F MK L PNL+TY+ +ID KGG+
Sbjct: 213 ALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGV 272
Query: 598 -YQEAMEIFRELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGKPPNVVTYN 422
++ +EIF E+ + G++ D + Y++L+ + GL E+A +L +EM G +V TYN
Sbjct: 273 EFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYN 332
Query: 421 SIIDAFGRSAITKFQEGAASETDELMNESSVCMVLQNANEGKESNDDRVMQLFEQLAAEK 242
+++DA + G E+M E +L N
Sbjct: 333 TLLDAVCKG-------GQMDLAYEIMLEMPGKKILPNV---------------------V 364
Query: 241 AHPSKEEAKGESQELLCILGLFHKMHELNIKPNVVTFSAILNACSRCNSFEDASILLEEL 62
+ + + ++ L L L+++M L I + V+++ +L+ ++ FEDA + +E+
Sbjct: 365 TYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEM 424
>ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 598 bits (1543), Expect(2) = 0.0
Identities = 302/432 (69%), Positives = 360/432 (83%), Gaps = 1/432 (0%)
Frame = -2
Query: 1294 GLKPNLVTYNAVIDAFAKGGVDFSKAVEIFDEMVANGVQPDRITFNSLLAVCSRGGLWEQ 1115
GLKPNLVTYNAVIDA KGGV+F + VEIF+EM+ NGVQPDRIT+NSLLAVCSRGGLWE
Sbjct: 252 GLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEA 311
Query: 1114 AKNLFGEMVNRGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMTVKNVLPNVVTYSTMID 935
A+NLF EM++RGIDQD+FTYNTLLDAVCKGGQMDLA+EIM EM K +LPNVVTYSTM D
Sbjct: 312 ARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371
Query: 934 GCAKAGKLEEALNLFDEMKHLGIRLDRVSYNTLLAIYASLGRFQEAMGICKMMERANIKK 755
G AKAG+LE+ALNL++EMK LGI LDRVSYNTLL+IYA LGRF++A+ +CK M + +KK
Sbjct: 372 GYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKK 431
Query: 754 DVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTLIDVYSKGGLYQEAMEIF 575
DVVTYNALL YGKQG ++EV ++F++MK++ + PNLLTYSTLIDVYSKG LY+EAME+F
Sbjct: 432 DVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVF 491
Query: 574 RELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGKPPNVVTYNSIIDAFGRS 395
RE KQAGL+ADVVLYS LI+ALCKNGLV+SAV LLDEMT+EG PNVVTYNSIIDAFGRS
Sbjct: 492 REFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRS 551
Query: 394 AITKFQEGAASETDELMNESSVCMVLQNANEGKESNDD-RVMQLFEQLAAEKAHPSKEEA 218
+F ++E +ES M+++ +E + + DD V + ++QL +EK P+K+E
Sbjct: 552 TTAEFLVDGVGASNERQSESPSFMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKER 611
Query: 217 KGESQELLCILGLFHKMHELNIKPNVVTFSAILNACSRCNSFEDASILLEELRLFDNQVY 38
G+ +E+ IL +F KMHEL IKPNVVTFSAILNACSRC S EDAS+LLEELRLFDNQVY
Sbjct: 612 LGK-EEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELRLFDNQVY 670
Query: 37 GVAHGLLMGSRE 2
GVAHGLLMG E
Sbjct: 671 GVAHGLLMGFSE 682
Score = 211 bits (537), Expect(2) = 0.0
Identities = 109/171 (63%), Positives = 136/171 (79%), Gaps = 3/171 (1%)
Frame = -1
Query: 1871 SKSQLGVDFRGRKSTRFSSKTHFRGPK---TSSGSPAAEEALQQALRFSRDDDGSLDSVL 1701
SKS+L +F GR+STRF SK HF PK T+ S AEE L Q L+F +DD SLD++L
Sbjct: 82 SKSELASNFSGRRSTRFVSKFHFGRPKSSMTTRHSAIAEEVLHQVLQFGKDD-ASLDNIL 140
Query: 1700 RSYESKFCGSDDYGFLLREFGNRGECSKAVRCFEFAIQREQKRNEQGKLASSMISVLGRL 1521
++ESK CGS+DY FLLRE GNRGEC KA+RCF+FA+ RE ++NE+GKLAS+MIS LGRL
Sbjct: 141 LNFESKLCGSEDYTFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRL 200
Query: 1520 GRVDLAKRVFETANRDGYGNTVYAFSALISAYGRSGCCEKALMVFDSMKKS 1368
G+V+LAK VFETA +GYGNTV+AFSALISAYG+SG ++A+ VF+SMK S
Sbjct: 201 GKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVS 251
Score = 175 bits (443), Expect = 4e-41
Identities = 117/396 (29%), Positives = 197/396 (49%), Gaps = 18/396 (4%)
Frame = -2
Query: 1222 KAVEIFD-EMVANGVQPDRITFNS-LLAVCSRGGLWEQAKNLFGEMVNRGIDQDIFTYNT 1049
KA+ FD +V G + +R S +++ R G E AK +F ++ G +F ++
Sbjct: 168 KAIRCFDFALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSA 227
Query: 1048 LLDAVCKGGQMDLAFEIMSEMTVKNVLPNVVTYSTMIDGCAKAG-KLEEALNLFDEMKHL 872
L+ A K G D A ++ M V + PN+VTY+ +ID C K G + + + +F+EM
Sbjct: 228 LISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRN 287
Query: 871 GIRLDRVSYNTLLAIYASLGRFQEAMGICKMMERANIKKDVVTYNALLRNYGKQGIYDEV 692
G++ DR++YN+LLA+ + G ++ A + M I +DV TYN LL K G D
Sbjct: 288 GVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLA 347
Query: 691 KKLFRDMKEENLTPNLLTYSTLIDVYSKGGLYQEAMEIFRELKQAGLEADVVLYSALIDA 512
++ +M + + PN++TYST+ D Y+K G ++A+ ++ E+K G+ D V Y+ L+
Sbjct: 348 YEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSI 407
Query: 511 LCKNGLVESAVSLLDEMTREGKPPNVVTYNSIIDAFGRSAITKFQEGAASETDELMNESS 332
K G E A+ + EM G +VVTYN+++D +G+ +G +E + E
Sbjct: 408 YAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGK-------QGKFNEVTRVFKEMK 460
Query: 331 VCMVLQNANE--------GKESNDDRVMQLFEQLAAEKAHPSKEEAKGESQELLCILG-- 182
V N K S + M++F + + + E LC G
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREF-KQAGLKADVVLYSELINALCKNGLV 519
Query: 181 -----LFHKMHELNIKPNVVTFSAILNACSRCNSFE 89
L +M + I+PNVVT+++I++A R + E
Sbjct: 520 DSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555
Score = 103 bits (258), Expect = 1e-19
Identities = 76/300 (25%), Positives = 143/300 (47%), Gaps = 3/300 (1%)
Frame = -2
Query: 952 YSTMIDGCAKAGKLEEALNLFD-EMKHLGIRLDRVSY-NTLLAIYASLGRFQEAMGICKM 779
Y+ ++ G+ +A+ FD + G + +R + +++ LG+ + A G+ +
Sbjct: 153 YTFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRLGKVELAKGVFET 212
Query: 778 MERANIKKDVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTLIDVYSKGGL 599
V ++AL+ YGK G +DE K+F MK L PNL+TY+ +ID KGG+
Sbjct: 213 ALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGV 272
Query: 598 -YQEAMEIFRELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGKPPNVVTYN 422
++ +EIF E+ + G++ D + Y++L+ + GL E+A +L +EM G +V TYN
Sbjct: 273 EFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYN 332
Query: 421 SIIDAFGRSAITKFQEGAASETDELMNESSVCMVLQNANEGKESNDDRVMQLFEQLAAEK 242
+++DA + G E+M E +L N
Sbjct: 333 TLLDAVCKG-------GQMDLAYEIMLEMPGKKILPNV---------------------V 364
Query: 241 AHPSKEEAKGESQELLCILGLFHKMHELNIKPNVVTFSAILNACSRCNSFEDASILLEEL 62
+ + + ++ L L L+++M L I + V+++ +L+ ++ FEDA + +E+
Sbjct: 365 TYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEM 424
>ref|XP_002301519.1| predicted protein [Populus trichocarpa] gi|222843245|gb|EEE80792.1|
predicted protein [Populus trichocarpa]
Length = 718
Score = 623 bits (1606), Expect(2) = 0.0
Identities = 316/433 (72%), Positives = 367/433 (84%), Gaps = 2/433 (0%)
Frame = -2
Query: 1294 GLKPNLVTYNAVIDAFAKGGVDFSKAVEIFDEMVANGVQPDRITFNSLLAVCSRGGLWEQ 1115
GLKPNLVTYNAVIDA KGGV+F + +EIFDEM+ NG+QPDRITFNSLLAVCS+GGLWE
Sbjct: 142 GLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEA 201
Query: 1114 AKNLFGEMVNRGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMTVKNVLPNVVTYSTMID 935
A++L EMVNRGIDQDIFTYNTLLDAVCKGGQ+D+AFEIMSEM KN+LPNVVTYSTMID
Sbjct: 202 ARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMID 261
Query: 934 GCAKAGKLEEALNLFDEMKHLGIRLDRVSYNTLLAIYASLGRFQEAMGICKMMERANIKK 755
G AKAG+L++A NLF+EMK LGI LDRVSYNTLL+IYA LGRF+EAM +C+ ME + I+K
Sbjct: 262 GYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRK 321
Query: 754 DVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTLIDVYSKGGLYQEAMEIF 575
DVVTYNALL YGKQ YD V+K+F +MK +++PNLLTYSTLIDVYSKGGLY+EAM++F
Sbjct: 322 DVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVF 381
Query: 574 RELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGKPPNVVTYNSIIDAFGRS 395
RE K+AGL+ADVVLYSALIDALCKNGLVESAVSLLDEMT+EG PNVVTYNSIIDAFGR
Sbjct: 382 REFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRP 441
Query: 394 AITKFQEGAASETDELMNESSVCMVLQNANEG--KESNDDRVMQLFEQLAAEKAHPSKEE 221
A T+ A +T EL +S ++ A + + D+R++++F QLAAEKA +K
Sbjct: 442 ATTESVVDDAGQTSELQIDSLSSSAVEKATKSLVADREDNRIIKIFGQLAAEKAGQAKNS 501
Query: 220 AKGESQELLCILGLFHKMHELNIKPNVVTFSAILNACSRCNSFEDASILLEELRLFDNQV 41
QE++CILG+FHKMHEL IKPNVVTFSAILNACSRCNSFE+AS+LLEELRLFDNQV
Sbjct: 502 G---GQEMMCILGVFHKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQV 558
Query: 40 YGVAHGLLMGSRE 2
YGVAHGLLMG RE
Sbjct: 559 YGVAHGLLMGYRE 571
Score = 174 bits (441), Expect(2) = 0.0
Identities = 83/132 (62%), Positives = 110/132 (83%)
Frame = -1
Query: 1769 AEEALQQALRFSRDDDGSLDSVLRSYESKFCGSDDYGFLLREFGNRGECSKAVRCFEFAI 1590
A+EALQ + + +D+ +L++VL ++ES+ GSDDY FLLRE GNRG+C KA+ CFEFA+
Sbjct: 9 AQEALQNVIEYGKDER-ALENVLLNFESRLSGSDDYVFLLRELGNRGDCKKAICCFEFAV 67
Query: 1589 QREQKRNEQGKLASSMISVLGRLGRVDLAKRVFETANRDGYGNTVYAFSALISAYGRSGC 1410
+RE+K+NEQGKLAS+MIS LGRLG+V++AK VF+ A +GYGNTVYAFSA+ISAYGRSG
Sbjct: 68 KRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGY 127
Query: 1409 CEKALMVFDSMK 1374
C +A+ +F SMK
Sbjct: 128 CNEAIKIFYSMK 139
Score = 166 bits (419), Expect = 3e-38
Identities = 107/363 (29%), Positives = 195/363 (53%), Gaps = 11/363 (3%)
Frame = -2
Query: 1159 NSLLAVCSRGGLWEQAKNLFGEMVNRGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMTV 980
+++++ R G E AK +F + G ++ ++ ++ A + G + A +I M
Sbjct: 81 SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD 140
Query: 979 KNVLPNVVTYSTMIDGCAKAG-KLEEALNLFDEMKHLGIRLDRVSYNTLLAIYASLGRFQ 803
+ PN+VTY+ +ID C K G + + L +FDEM G++ DR+++N+LLA+ + G ++
Sbjct: 141 YGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWE 200
Query: 802 EAMGI-CKMMERANIKKDVVTYNALLRNYGKQGIYDEVKKLFRDMKEENLTPNLLTYSTL 626
A + C+M+ R I +D+ TYN LL K G D ++ +M +N+ PN++TYST+
Sbjct: 201 AARSLSCEMVNR-GIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTM 259
Query: 625 IDVYSKGGLYQEAMEIFRELKQAGLEADVVLYSALIDALCKNGLVESAVSLLDEMTREGK 446
ID Y+K G +A +F E+K G+ D V Y+ L+ K G E A+ + EM G
Sbjct: 260 IDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGI 319
Query: 445 PPNVVTYNSIIDAFGR----SAITK-FQEGAASE-TDELMNESSVCMVLQNANEGKESND 284
+VVTYN+++ +G+ + K F+E A + L+ S++ V +E+ D
Sbjct: 320 RKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMD 379
Query: 283 DRVMQLFEQLAAEK---AHPSKEEAKGESQELLCILGLFHKMHELNIKPNVVTFSAILNA 113
V + F++ + + + +A ++ + + L +M + I+PNVVT+++I++A
Sbjct: 380 --VFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 437
Query: 112 CSR 104
R
Sbjct: 438 FGR 440