BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002448
         (1090 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK95696.1| unknown [Populus trichocarpa]                          366   5e-99
ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|2...   364   2e-98
ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation prot...   360   4e-97
ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation prot...   355   1e-95
ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, p...   350   3e-94

>gb|ABK95696.1| unknown [Populus trichocarpa]
          Length = 278

 Score =  366 bits (940), Expect = 5e-99
 Identities = 177/269 (65%), Positives = 212/269 (78%)
 Frame = -1

Query: 991 MVAQDTSLKASMNARIIGSGGDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 812
           MV  +  L  ++NAR+ GSG + +ILAHGFGGDQS+WDK V  LA+   V+VFDW FSGA
Sbjct: 1   MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 811 TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFVGHSMSGMIGCLASIIRPDLFKRL 632
             DP++FDPVKYSSYDAFA DLI+L+DE++L SSV VGHSMSGMIGC+ASI RPDLFK+L
Sbjct: 61  IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 631 VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIEFNFQMWATNFASLVVDAKDPPSVEQFSK 452
           +L+GASPRY+N++DYEGGF   ++E+I  NIE N+  WA  FAS VVDA DPPSV+ FSK
Sbjct: 121 ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASAVVDANDPPSVDMFSK 180

Query: 451 SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 272
            L RMRPE A+ +AKTVF  D    L+KV  PC I+QT+ DIVVPNSVAYYMQ+KI GKS
Sbjct: 181 CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 271 TVEIIEADGHFPQLTKTKQLLDILYRVMS 185
           TVEIIE DGHFP LT  +QLLD+L   MS
Sbjct: 241 TVEIIETDGHFPHLTAHQQLLDVLIAAMS 269


>ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|222854292|gb|EEE91839.1|
           predicted protein [Populus trichocarpa]
          Length = 264

 Score =  364 bits (935), Expect = 2e-98
 Identities = 175/264 (66%), Positives = 211/264 (79%)
 Frame = -1

Query: 991 MVAQDTSLKASMNARIIGSGGDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 812
           MV  +  L  ++NAR+ GSG + +ILAHGFGGDQS+WDK V  LA+   V+VFDW FSGA
Sbjct: 1   MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 811 TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFVGHSMSGMIGCLASIIRPDLFKRL 632
             DP++FDPVKYSSYDAFA DLI+L+DE++L SSV VGHSMSGMIGC+ASI RPDLFK+L
Sbjct: 61  IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 631 VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIEFNFQMWATNFASLVVDAKDPPSVEQFSK 452
           +L+GASPRY+N++DYEGGF   ++E+I  NIE N+  WA  FAS+VVDA DPPSV+ FSK
Sbjct: 121 ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASVVVDANDPPSVDMFSK 180

Query: 451 SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 272
            L RMRPE A+ +AKTVF  D    L+KV  PC I+QT+ DIVVPNSVAYYMQ+KI GKS
Sbjct: 181 CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 271 TVEIIEADGHFPQLTKTKQLLDIL 200
           TVEIIE DGHFP LT  +QLLD+L
Sbjct: 241 TVEIIETDGHFPHLTAHQQLLDVL 264


>ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 1
           [Vitis vinifera] gi|297738861|emb|CBI28106.3| unnamed
           protein product [Vitis vinifera]
          Length = 277

 Score =  360 bits (923), Expect = 4e-97
 Identities = 177/268 (66%), Positives = 208/268 (77%)
 Frame = -1

Query: 991 MVAQDTSLKASMNARIIGSGGDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 812
           M+  +  L A+MNAR+IG G + ++LAHGFGGDQS+WDK    LA+ Y V+VFDWNFSGA
Sbjct: 1   MLVIEKGLSAAMNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGA 60

Query: 811 TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFVGHSMSGMIGCLASIIRPDLFKRL 632
             DPS++D  KYSSYDAFA DLIALLDE  L +SVFVGHSMSGMIGC+ASI RP+LFKRL
Sbjct: 61  VKDPSLYDSTKYSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRL 120

Query: 631 VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIEFNFQMWATNFASLVVDAKDPPSVEQFSK 452
           + I ASPRYLN+ +YEGGFE+ +IE+IF NIE +F  WA+NFA L VD  DP SVE+  K
Sbjct: 121 IFIAASPRYLNANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEK 180

Query: 451 SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 272
            + RMRPEVAL LAKTVFC D    LDKV  PCTI+Q +NDIV P SVA YMQKKI GK+
Sbjct: 181 CIRRMRPEVALPLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKT 240

Query: 271 TVEIIEADGHFPQLTKTKQLLDILYRVM 188
           TVEII+ DGHFPQLT   QLL +L  V+
Sbjct: 241 TVEIIDMDGHFPQLTAHLQLLSVLDSVL 268


>ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 2
           [Vitis vinifera]
          Length = 269

 Score =  355 bits (910), Expect = 1e-95
 Identities = 174/257 (67%), Positives = 202/257 (78%)
 Frame = -1

Query: 958 MNARIIGSGGDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGATNDPSMFDPVK 779
           MNAR+IG G + ++LAHGFGGDQS+WDK    LA+ Y V+VFDWNFSGA  DPS++D  K
Sbjct: 4   MNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGAVKDPSLYDSTK 63

Query: 778 YSSYDAFAKDLIALLDEMNLSSSVFVGHSMSGMIGCLASIIRPDLFKRLVLIGASPRYLN 599
           YSSYDAFA DLIALLDE  L +SVFVGHSMSGMIGC+ASI RP+LFKRL+ I ASPRYLN
Sbjct: 64  YSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRLIFIAASPRYLN 123

Query: 598 SEDYEGGFEKPQIEEIFLNIEFNFQMWATNFASLVVDAKDPPSVEQFSKSLGRMRPEVAL 419
           + +YEGGFE+ +IE+IF NIE +F  WA+NFA L VD  DP SVE+  K + RMRPEVAL
Sbjct: 124 ANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEKCIRRMRPEVAL 183

Query: 418 SLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKSTVEIIEADGHF 239
            LAKTVFC D    LDKV  PCTI+Q +NDIV P SVA YMQKKI GK+TVEII+ DGHF
Sbjct: 184 PLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKTTVEIIDMDGHF 243

Query: 238 PQLTKTKQLLDILYRVM 188
           PQLT   QLL +L  V+
Sbjct: 244 PQLTAHLQLLSVLDSVL 260


>ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
           communis] gi|223545524|gb|EEF47029.1| sigma factor sigb
           regulation protein rsbq, putative [Ricinus communis]
          Length = 276

 Score =  350 bits (899), Expect = 3e-94
 Identities = 173/272 (63%), Positives = 213/272 (78%), Gaps = 4/272 (1%)
 Frame = -1

Query: 991 MVAQDTSLKASMNARIIGSGGDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 812
           MV  +T L  +MNA++IG+G +T++LAHG+GGDQS WDK V  LA+ + ++VFDW FSGA
Sbjct: 1   MVMLETGLSTAMNAKVIGTGEETIVLAHGYGGDQSAWDKIVPDLAKYFRILVFDWLFSGA 60

Query: 811 TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSS--VFVGHSMSGMIGCLASIIRPDLFK 638
             D  +FDP KY+S+DAFA DLI LL+EM+L SS  VFVGHSMSGMIGC+ASI RP+LFK
Sbjct: 61  VKDQQLFDPEKYASFDAFADDLICLLEEMSLISSPVVFVGHSMSGMIGCIASIKRPELFK 120

Query: 637 RLVLIGASPRYLNSEDYEGGFEKPQIEEIFLNIEFNFQMWATNFASLVVDAKD--PPSVE 464
           RL+L+GASPRY+N +DYEGGF+K  +++I  NIE NFQ W   FASLVV AKD  P SVE
Sbjct: 121 RLILVGASPRYINIDDYEGGFKKTDVDDIISNIESNFQNWTPGFASLVVGAKDKDPDSVE 180

Query: 463 QFSKSLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKI 284
           QF+K L  M+PE ALS+AKTVF SD    LDKV  PCTI+QT+ D+VVPNSV YYMQ+KI
Sbjct: 181 QFTKCLSNMKPEHALSVAKTVFYSDEREILDKVSTPCTIVQTTGDLVVPNSVVYYMQEKI 240

Query: 283 NGKSTVEIIEADGHFPQLTKTKQLLDILYRVM 188
            GKS+VE I+ DGHFP LT  +QLLD+L  V+
Sbjct: 241 KGKSSVEFIDTDGHFPHLTAHQQLLDVLTAVL 272