BLASTX nr result

ID: Coptis23_contig00002419 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002419
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530251.1| conserved hypothetical protein [Ricinus comm...    60   1e-07
ref|XP_002307139.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_002310617.1| predicted protein [Populus trichocarpa] gi|2...    57   1e-06
ref|XP_002275681.2| PREDICTED: uncharacterized protein LOC100247...    57   2e-06
emb|CAN73103.1| hypothetical protein VITISV_042892 [Vitis vinifera]    57   2e-06

>ref|XP_002530251.1| conserved hypothetical protein [Ricinus communis]
           gi|223530217|gb|EEF32121.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 809

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/52 (61%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
 Frame = +1

Query: 64  FSQAVDDPAIIHLRKWDSTK--LDLSKFCEAFISPTRELLLLLSHQCEVSLL 213
           F+   + PAI+ L KW  ++  L+LS+F EAFISPTRELLLLLSHQCE  LL
Sbjct: 4   FNGGGESPAILQLYKWGPSQCQLNLSEFREAFISPTRELLLLLSHQCEALLL 55


>ref|XP_002307139.1| predicted protein [Populus trichocarpa] gi|222856588|gb|EEE94135.1|
           predicted protein [Populus trichocarpa]
          Length = 814

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
 Frame = +1

Query: 79  DDPAIIHLRKWDSTK--LDLSKFCEAFISPTRELLLLLSHQCEVSLL 213
           + PAI+ L KW  +K  +DLS+F E FISPTRELLLLLS+QCE  LL
Sbjct: 8   ESPAILQLHKWGPSKFNIDLSEFREGFISPTRELLLLLSYQCEALLL 54


>ref|XP_002310617.1| predicted protein [Populus trichocarpa] gi|222853520|gb|EEE91067.1|
           predicted protein [Populus trichocarpa]
          Length = 920

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/47 (59%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
 Frame = +1

Query: 79  DDPAIIHLRKWDSTK--LDLSKFCEAFISPTRELLLLLSHQCEVSLL 213
           + PA++ L KW  ++  +DLS+F E FISPTRELLLLLS+QCE  LL
Sbjct: 8   ESPAVLQLHKWGPSQFNIDLSEFREGFISPTRELLLLLSYQCEALLL 54


>ref|XP_002275681.2| PREDICTED: uncharacterized protein LOC100247348 [Vitis vinifera]
          Length = 3288

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
 Frame = +1

Query: 64  FSQAVDDPAIIHLRKWDSTK--LDLSKFCEAFISPTRELLLLLSHQCEVSLL 213
           +S + + PA++ L +W  ++  L+LS+F EAFISPTRELLLLLS+QCE  LL
Sbjct: 3   YSCSGEGPAMLQLHRWSPSQFQLNLSEFREAFISPTRELLLLLSYQCEALLL 54


>emb|CAN73103.1| hypothetical protein VITISV_042892 [Vitis vinifera]
          Length = 995

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
 Frame = +1

Query: 64  FSQAVDDPAIIHLRKWDSTK--LDLSKFCEAFISPTRELLLLLSHQCEVSLL 213
           +S + + PA++ L +W  ++  L+LS+F EAFISPTRELLLLLS+QCE  LL
Sbjct: 3   YSCSGEGPAMLQLHRWSPSQFQLNLSEFREAFISPTRELLLLLSYQCEALLL 54


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